WD repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18900 |
| fragaria_vesca | FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 FvH4_4g07920 |
| malus_domestica | MD13G1251600.v1.1 |
| prunus_persica | Prupe.1G084200_v2.0.a1 |
| pyrus_communis | pycom13g22620 |
| rosa_chinensis | RchiOBHm_Chr4g0401591 |
| rosa_laevigata | RLG00000009142 |
| rosa_multiflora | Rmu_sc0004644.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00346170 |
| rosa_rugosa | Rorug04G0030400 |
| rosa_samantha | Rh4AG108000 Rh4BG101900 Rh4CG116300 Rh4DG099200 |
| rosa_wichuraiana | Rw4G008770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3407 |
| AarI | CACCTGC | 1 cut(s) | 647 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1273, 3371 |
| Acc36I | ACCTGC | 2 cut(s) | 647, 2490 |
| AccB1I | GGYRCC | 6 cut(s) | 80, 218, 719, 2347, 2762, 3321 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 941 |
| AccI | GTMKAC | 3 cut(s) | 2561, 2689, 3132 |
| AccII | CGCG | 1 cut(s) | 406 |
| AccIII | TCCGGA | 2 cut(s) | 522, 1087 |
| AclWI | GGATC | 8 cut(s) | 748, 779, 952, 971, 1073, 1979, 2138, 2199 |
| AcoI | YGGCCR | 2 cut(s) | 342, 582 |
| AcuI | CTGAAG | 2 cut(s) | 82, 1305 |
| AcvI | CACGTG | 1 cut(s) | 2165 |
| AcyI | GRCGYC | 2 cut(s) | 54, 1718 |
| AfaI | GTAC | 4 cut(s) | 1156, 2132, 2937, 3329 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 941, 1240, 1331, 1468 |
| AflII | CTTAAG | 2 cut(s) | 1355, 2369 |
| AflIII | ACRYGT | 1 cut(s) | 1859 |
| AhlI | ACTAGT | 1 cut(s) | 727 |
| AjnI | CCWGG | 4 cut(s) | 766, 2180, 2464, 2611 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2840, 2872 |
| AleI | CACNNNNGTG | 1 cut(s) | 1406 |
| Alw21I | GWGCWC | 1 cut(s) | 1307 |
| Alw26I | GTCTC | 8 cut(s) | 31, 94, 444, 461, 1258, 1281, 2265, 2312 |
| AlwI | GGATC | 8 cut(s) | 748, 779, 952, 971, 1073, 1979, 2138, 2199 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 124, 195, 1610, 1988 |
| Ama87I | CYCGRG | 1 cut(s) | 1773 |
| Aor13HI | TCCGGA | 2 cut(s) | 522, 1087 |
| ApaI | GGGCCC | 1 cut(s) | 556 |
| ApeKI | GCWGC | 9 cut(s) | 653, 904, 1110, 1607, 1610, 1646, 2616, 3108, 3181 |
| AseI | ATTAAT | 2 cut(s) | 831, 3195 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 888, 2358, 2572 |
| AspLEI | GCGC | 2 cut(s) | 63, 2218 |
| AsuC2I | CCSGG | 4 cut(s) | 174, 1242, 1774, 1775 |
| AsuHPI | GGTGA | 8 cut(s) | 145, 346, 671, 2082, 2446, 2531, 2745, 3128 |
| AsuII | TTCGAA | 1 cut(s) | 329 |
| AvaI | CYCGRG | 1 cut(s) | 1773 |
| AvaII | GGWCC | 6 cut(s) | 1672, 2007, 2384, 2479, 2651, 2824 |
| AxyI | CCTNAGG | 2 cut(s) | 502, 1326 |
| BaeGI | GKGCMC | 1 cut(s) | 556 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 113, 146 |
| BalI | TGGCCA | 1 cut(s) | 584 |
| BanI | GGYRCC | 6 cut(s) | 80, 218, 719, 2347, 2762, 3321 |
| BanII | GRGCYC | 3 cut(s) | 556, 1928, 2976 |
| BbrPI | CACGTG | 1 cut(s) | 2165 |
| BbsI | GAAGAC | 5 cut(s) | 88, 266, 769, 2586, 3020 |
| Bbv12I | GWGCWC | 1 cut(s) | 1307 |
| BbvCI | CCTCAGC | 1 cut(s) | 188 |
| BbvI | GCAGC | 9 cut(s) | 640, 916, 1122, 1594, 1597, 1658, 2603, 3095, 3168 |
| BceAI | ACGGC | 6 cut(s) | 71, 143, 159, 219, 232, 2186 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 319, 335, 353, 369, 1356, 1390 |
| BciT130I | CCWGG | 4 cut(s) | 768, 2182, 2466, 2613 |
| BclI | TGATCA | 1 cut(s) | 3175 |
| BcnI | CCSGG | 4 cut(s) | 174, 1242, 1774, 1775 |
| BcoDI | GTCTC | 8 cut(s) | 31, 94, 444, 461, 1258, 1281, 2265, 2312 |
| BcuI | ACTAGT | 1 cut(s) | 727 |
| BfaI | CTAG | 5 cut(s) | 471, 647, 728, 908, 974 |
| BfmI | CTRYAG | 3 cut(s) | 654, 1547, 1575 |
| BfoI | RGCGCY | 1 cut(s) | 64 |
| BfrI | CTTAAG | 2 cut(s) | 1355, 2369 |
| BfuAI | ACCTGC | 2 cut(s) | 647, 2490 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 38 |
| BglII | AGATCT | 1 cut(s) | 3160 |
| Bme1390I | CCNGG | 8 cut(s) | 174, 768, 1242, 1774, 1775, 2182, 2466, 2613 |
| Bme18I | GGWCC | 6 cut(s) | 1672, 2007, 2384, 2479, 2651, 2824 |
| BmeT110I | CYCGRG | 1 cut(s) | 1773 |
| BmrFI | CCNGG | 8 cut(s) | 174, 768, 1242, 1774, 1775, 2182, 2466, 2613 |
| BmrI | ACTGGG | 2 cut(s) | 572, 2511 |
| BmuI | ACTGGG | 2 cut(s) | 572, 2511 |
| BpiI | GAAGAC | 5 cut(s) | 88, 266, 769, 2586, 3020 |
| BpmI | CTGGAG | 5 cut(s) | 568, 706, 1452, 2625, 2985 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| Bpu14I | TTCGAA | 1 cut(s) | 329 |
| BpuMI | CCSGG | 4 cut(s) | 174, 1242, 1774, 1775 |
| BsaAI | YACGTR | 3 cut(s) | 1860, 2165, 3340 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2230 |
| BsaHI | GRCGYC | 2 cut(s) | 54, 1718 |
| BsaI | GGTCTC | 2 cut(s) | 2265, 2312 |
| BsaJI | CCNNGG | 8 cut(s) | 291, 396, 767, 1773, 1774, 2181, 2312, 2611 |
| BsaWI | WCCGGW | 3 cut(s) | 522, 1087, 2765 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 879, 909, 2513, 2543 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 941, 1240, 1331, 1468 |
| Bse118I | RCCGGY | 5 cut(s) | 37, 77, 110, 340, 3324 |
| Bse1I | ACTGG | 7 cut(s) | 578, 829, 905, 1174, 2457, 2506, 2608 |
| Bse21I | CCTNAGG | 2 cut(s) | 502, 1326 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2230 |
| BseAI | TCCGGA | 2 cut(s) | 522, 1087 |
| BseBI | CCWGG | 4 cut(s) | 768, 2182, 2466, 2613 |
| BseDI | CCNNGG | 8 cut(s) | 291, 396, 767, 1773, 1774, 2181, 2312, 2611 |
| BseJI | GATNNNNATC | 1 cut(s) | 2230 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 941, 1240, 1331, 1468 |
| BseMII | CTCAG | 9 cut(s) | 42, 202, 426, 516, 1200, 1317, 1812, 3054, 3276 |
| BseNI | ACTGG | 7 cut(s) | 578, 829, 905, 1174, 2457, 2506, 2608 |
| BseRI | GAGGAG | 2 cut(s) | 56, 2521 |
| BseSI | GKGCMC | 1 cut(s) | 556 |
| BseX3I | CGGCCG | 1 cut(s) | 342 |
| BseXI | GCAGC | 9 cut(s) | 640, 916, 1122, 1594, 1597, 1658, 2603, 3095, 3168 |
| BseYI | CCCAGC | 1 cut(s) | 1742 |
| BsgI | GTGCAG | 3 cut(s) | 58, 1023, 1129 |
| Bsh1236I | CGCG | 1 cut(s) | 406 |
| Bsh1285I | CGRYCG | 1 cut(s) | 345 |
| BshNI | GGYRCC | 6 cut(s) | 80, 218, 719, 2347, 2762, 3321 |
| BsiEI | CGRYCG | 1 cut(s) | 345 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1307 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1773 |
| BslFI | GGGAC | 5 cut(s) | 248, 483, 1685, 2046, 2492 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 941, 1240, 1331, 1468 |
| BsmAI | GTCTC | 8 cut(s) | 31, 94, 444, 461, 1258, 1281, 2265, 2312 |
| BsmBI | CGTCTC | 2 cut(s) | 31, 94 |
| BsmFI | GGGAC | 5 cut(s) | 248, 483, 1685, 2046, 2492 |
| BsmI | GAATGC | 1 cut(s) | 1552 |
| Bso31I | GGTCTC | 2 cut(s) | 2265, 2312 |
| BsoBI | CYCGRG | 1 cut(s) | 1773 |
| Bsp119I | TTCGAA | 1 cut(s) | 329 |
| Bsp120I | GGGCCC | 1 cut(s) | 552 |
| Bsp1286I | GDGCHC | 4 cut(s) | 556, 1307, 1928, 2976 |
| Bsp13I | TCCGGA | 2 cut(s) | 522, 1087 |
| Bsp19I | CCATGG | 1 cut(s) | 291 |
| BspCNI | CTCAG | 9 cut(s) | 41, 201, 427, 515, 1201, 1318, 1813, 3053, 3277 |
| BspEI | TCCGGA | 2 cut(s) | 522, 1087 |
| BspFNI | CGCG | 1 cut(s) | 406 |
| BspHI | TCATGA | 1 cut(s) | 2125 |
| BspMAI | CTGCAG | 1 cut(s) | 658 |
| BspMI | ACCTGC | 2 cut(s) | 647, 2490 |
| BspPI | GGATC | 8 cut(s) | 748, 779, 952, 971, 1073, 1979, 2138, 2199 |
| BspT104I | TTCGAA | 1 cut(s) | 329 |
| BspT107I | GGYRCC | 6 cut(s) | 80, 218, 719, 2347, 2762, 3321 |
| BspTI | CTTAAG | 2 cut(s) | 1355, 2369 |
| BspTNI | GGTCTC | 2 cut(s) | 2265, 2312 |
| BsrFI | RCCGGY | 5 cut(s) | 37, 77, 110, 340, 3324 |
| BsrI | ACTGG | 7 cut(s) | 578, 829, 905, 1174, 2457, 2506, 2608 |
| BssAI | RCCGGY | 5 cut(s) | 37, 77, 110, 340, 3324 |
| BssECI | CCNNGG | 8 cut(s) | 291, 396, 767, 1773, 1774, 2181, 2312, 2611 |
| BssNI | GRCGYC | 2 cut(s) | 54, 1718 |
| BssT1I | CCWWGG | 3 cut(s) | 291, 396, 2312 |
| Bst2UI | CCWGG | 4 cut(s) | 768, 2182, 2466, 2613 |
| Bst4CI | ACNGT | 8 cut(s) | 126, 223, 704, 1199, 1309, 1657, 1791, 3371 |
| Bst6I | CTCTTC | 3 cut(s) | 1739, 2261, 2928 |
| BstACI | GRCGYC | 2 cut(s) | 54, 1718 |
| BstAFI | CTTAAG | 2 cut(s) | 1355, 2369 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1619, 1892 |
| BstBAI | YACGTR | 3 cut(s) | 1860, 2165, 3340 |
| BstBI | TTCGAA | 1 cut(s) | 329 |
| BstC8I | GCNNGC | 2 cut(s) | 342, 2106 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstEII | GGTNACC | 2 cut(s) | 151, 698 |
| BstFNI | CGCG | 1 cut(s) | 406 |
| BstH2I | RGCGCY | 1 cut(s) | 64 |
| BstHHI | GCGC | 2 cut(s) | 63, 2218 |
| BstMAI | GTCTC | 8 cut(s) | 31, 94, 444, 461, 1258, 1281, 2265, 2312 |
| BstMCI | CGRYCG | 1 cut(s) | 345 |
| BstNI | CCWGG | 4 cut(s) | 768, 2182, 2466, 2613 |
| BstNSI | RCATGY | 6 cut(s) | 1108, 1690, 1810, 2405, 3153, 3209 |
| BstPI | GGTNACC | 2 cut(s) | 151, 698 |
| BstSCI | CCNGG | 8 cut(s) | 172, 766, 1240, 1772, 1773, 2180, 2464, 2611 |
| BstSFI | CTRYAG | 3 cut(s) | 654, 1547, 1575 |
| BstSLI | GKGCMC | 1 cut(s) | 556 |
| BstUI | CGCG | 1 cut(s) | 406 |
| BstV1I | GCAGC | 9 cut(s) | 640, 916, 1122, 1594, 1597, 1658, 2603, 3095, 3168 |
| BstV2I | GAAGAC | 5 cut(s) | 88, 266, 769, 2586, 3020 |
| BstX2I | RGATCY | 5 cut(s) | 740, 944, 976, 1984, 3160 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2718 |
| BstYI | RGATCY | 5 cut(s) | 740, 944, 976, 1984, 3160 |
| BstZI | CGGCCG | 1 cut(s) | 342 |
| Bsu36I | CCTNAGG | 2 cut(s) | 502, 1326 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtgZI | GCGATG | 1 cut(s) | 1260 |
| BtsI | GCAGTG | 1 cut(s) | 1522 |
| BtsIMutI | CAGTG | 7 cut(s) | 585, 1131, 1314, 1522, 2601, 3048, 3376 |
| BveI | ACCTGC | 2 cut(s) | 647, 2490 |
| Cac8I | GCNNGC | 2 cut(s) | 342, 2106 |
| CaiI | CAGNNNCTG | 4 cut(s) | 124, 195, 1610, 1988 |
| CciI | TCATGA | 1 cut(s) | 2125 |
| CfoI | GCGC | 2 cut(s) | 63, 2218 |
| Cfr10I | RCCGGY | 5 cut(s) | 37, 77, 110, 340, 3324 |
| Cfr9I | CCCGGG | 1 cut(s) | 1773 |
| CseI | GACGC | 2 cut(s) | 62, 1726 |
| CsiI | ACCWGGT | 1 cut(s) | 2464 |
| Csp6I | GTAC | 4 cut(s) | 1155, 2131, 2936, 3328 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2082, 2117 |
| CviQI | GTAC | 4 cut(s) | 1155, 2131, 2936, 3328 |
| DraI | TTTAAA | 1 cut(s) | 2329 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1273, 3371 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1273, 3371 |
| EaeI | YGGCCR | 2 cut(s) | 342, 582 |
| EagI | CGGCCG | 1 cut(s) | 342 |
| Eam1104I | CTCTTC | 3 cut(s) | 1739, 2261, 2928 |
| EarI | CTCTTC | 3 cut(s) | 1739, 2261, 2928 |
| EclXI | CGGCCG | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 3 cut(s) | 291, 396, 2312 |
| Eco147I | AGGCCT | 1 cut(s) | 2311 |
| Eco24I | GRGCYC | 3 cut(s) | 556, 1928, 2976 |
| Eco31I | GGTCTC | 2 cut(s) | 2265, 2312 |
| Eco32I | GATATC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 6 cut(s) | 1672, 2007, 2384, 2479, 2651, 2824 |
| Eco52I | CGGCCG | 1 cut(s) | 342 |
| Eco57I | CTGAAG | 2 cut(s) | 82, 1305 |
| Eco72I | CACGTG | 1 cut(s) | 2165 |
| Eco81I | CCTNAGG | 2 cut(s) | 502, 1326 |
| Eco88I | CYCGRG | 1 cut(s) | 1773 |
| Eco91I | GGTNACC | 2 cut(s) | 151, 698 |
| EcoO109I | RGGNCCY | 6 cut(s) | 552, 553, 1672, 2479, 2609, 2728 |
| EcoO65I | GGTNACC | 2 cut(s) | 151, 698 |
| EcoRI | GAATTC | 3 cut(s) | 675, 1747, 2916 |
| EcoRII | CCWGG | 4 cut(s) | 766, 2180, 2464, 2611 |
| EcoRV | GATATC | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 3 cut(s) | 291, 396, 2312 |
| EcoT22I | ATGCAT | 3 cut(s) | 2233, 2719, 3207 |
| EcoT38I | GRGCYC | 3 cut(s) | 556, 1928, 2976 |
| ErhI | CCWWGG | 3 cut(s) | 291, 396, 2312 |
| Esp3I | CGTCTC | 2 cut(s) | 31, 94 |
| FaqI | GGGAC | 5 cut(s) | 248, 483, 1685, 2046, 2492 |
| FauNDI | CATATG | 5 cut(s) | 1486, 2149, 2293, 2668, 2713 |
| FbaI | TGATCA | 1 cut(s) | 3175 |
| FblI | GTMKAC | 3 cut(s) | 2561, 2689, 3132 |
| FriOI | GRGCYC | 3 cut(s) | 556, 1928, 2976 |
| FspBI | CTAG | 5 cut(s) | 471, 647, 728, 908, 974 |
| GlaI | GCGC | 2 cut(s) | 62, 2217 |
| GsaI | CCCAGC | 1 cut(s) | 1746 |
| GsuI | CTGGAG | 5 cut(s) | 568, 706, 1452, 2625, 2985 |
| HaeII | RGCGCY | 1 cut(s) | 64 |
| HgaI | GACGC | 2 cut(s) | 62, 1726 |
| HhaI | GCGC | 2 cut(s) | 63, 2218 |
| Hin1I | GRCGYC | 2 cut(s) | 54, 1718 |
| Hin6I | GCGC | 2 cut(s) | 61, 2216 |
| HinP1I | GCGC | 2 cut(s) | 61, 2216 |
| HincII | GTYRAC | 5 cut(s) | 2206, 2562, 2707, 3037, 3066 |
| HindII | GTYRAC | 5 cut(s) | 2206, 2562, 2707, 3037, 3066 |
| HindIII | AAGCTT | 3 cut(s) | 536, 1838, 2097 |
| HphI | GGTGA | 8 cut(s) | 145, 346, 671, 2082, 2446, 2531, 2745, 3128 |
| Hpy99I | CGWCG | 2 cut(s) | 56, 2566 |
| HpyCH4III | ACNGT | 8 cut(s) | 126, 223, 704, 1199, 1309, 1657, 1791, 3371 |
| HpyCH4IV | ACGT | 5 cut(s) | 24, 1859, 2164, 3123, 3339 |
| HpySE526I | ACGT | 5 cut(s) | 24, 1859, 2164, 3123, 3339 |
| Hsp92I | GRCGYC | 2 cut(s) | 54, 1718 |
| HspAI | GCGC | 2 cut(s) | 61, 2216 |
| KflI | GGGWCCC | 1 cut(s) | 1672 |
| Kpn2I | TCCGGA | 2 cut(s) | 522, 1087 |
| KroI | GCCGGC | 1 cut(s) | 340 |
| KroNI | GCCGGC | 1 cut(s) | 342 |
| Ksp22I | TGATCA | 1 cut(s) | 3175 |
| LmnI | GCTCC | 5 cut(s) | 857, 1077, 1803, 2302, 2971 |
| Lsp1109I | GCAGC | 9 cut(s) | 640, 916, 1122, 1594, 1597, 1658, 2603, 3095, 3168 |
| MabI | ACCWGGT | 1 cut(s) | 2464 |
| MaeI | CTAG | 5 cut(s) | 471, 647, 728, 908, 974 |
| MaeII | ACGT | 5 cut(s) | 24, 1859, 2164, 3123, 3339 |
| MfeI | CAATTG | 3 cut(s) | 1722, 2537, 3220 |
| MflI | RGATCY | 5 cut(s) | 740, 944, 976, 1984, 3160 |
| MhlI | GDGCHC | 4 cut(s) | 556, 1307, 1928, 2976 |
| MlsI | TGGCCA | 1 cut(s) | 584 |
| MluNI | TGGCCA | 1 cut(s) | 584 |
| MlyI | GAGTC | 5 cut(s) | 446, 788, 1832, 2516, 2567 |
| MmeI | TCCRAC | 3 cut(s) | 72, 111, 659 |
| Mox20I | TGGCCA | 1 cut(s) | 584 |
| Mph1103I | ATGCAT | 3 cut(s) | 2233, 2719, 3207 |
| MroI | TCCGGA | 2 cut(s) | 522, 1087 |
| MroNI | GCCGGC | 1 cut(s) | 340 |
| MroXI | GAANNNNTTC | 3 cut(s) | 888, 2358, 2572 |
| MscI | TGGCCA | 1 cut(s) | 584 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1406, 1425, 1691, 2392, 2716, 3319 |
| Msp20I | TGGCCA | 1 cut(s) | 584 |
| MspA1I | CMGCKG | 3 cut(s) | 1607, 1649, 3181 |
| MspCI | CTTAAG | 2 cut(s) | 1355, 2369 |
| MspR9I | CCNGG | 8 cut(s) | 174, 768, 1242, 1774, 1775, 2182, 2466, 2613 |
| MunI | CAATTG | 3 cut(s) | 1722, 2537, 3220 |
| Mva1269I | GAATGC | 1 cut(s) | 1552 |
| MvaI | CCWGG | 4 cut(s) | 768, 2182, 2466, 2613 |
| MvnI | CGCG | 1 cut(s) | 406 |
| NaeI | GCCGGC | 1 cut(s) | 342 |
| NciI | CCSGG | 4 cut(s) | 174, 1242, 1774, 1775 |
| NcoI | CCATGG | 1 cut(s) | 291 |
| NdeI | CATATG | 5 cut(s) | 1486, 2149, 2293, 2668, 2713 |
| NgoMIV | GCCGGC | 1 cut(s) | 340 |
| NmeAIII | GCCGAG | 1 cut(s) | 274 |
| NmuCI | GTSAC | 6 cut(s) | 151, 1264, 1517, 1726, 2452, 2519 |
| NsiI | ATGCAT | 3 cut(s) | 2233, 2719, 3207 |
| NspI | RCATGY | 6 cut(s) | 1108, 1690, 1810, 2405, 3153, 3209 |
| NspV | TTCGAA | 1 cut(s) | 329 |
| OliI | CACNNNNGTG | 1 cut(s) | 1406 |
| PagI | TCATGA | 1 cut(s) | 2125 |
| PaqCI | CACCTGC | 1 cut(s) | 647 |
| PceI | AGGCCT | 1 cut(s) | 2311 |
| PctI | GAATGC | 1 cut(s) | 1552 |
| PdiI | GCCGGC | 1 cut(s) | 342 |
| PdmI | GAANNNNTTC | 3 cut(s) | 888, 2358, 2572 |
| PflFI | GACNNNGTC | 1 cut(s) | 436 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 941 |
| PleI | GAGTC | 5 cut(s) | 445, 788, 1831, 2516, 2566 |
| PmaCI | CACGTG | 1 cut(s) | 2165 |
| PmlI | CACGTG | 1 cut(s) | 2165 |
| PpsI | GAGTC | 5 cut(s) | 445, 788, 1831, 2516, 2566 |
| Ppu21I | YACGTR | 3 cut(s) | 1860, 2165, 3340 |
| PpuMI | RGGWCCY | 2 cut(s) | 1672, 2479 |
| PshBI | ATTAAT | 2 cut(s) | 831, 3195 |
| PsiI | TTATAA | 1 cut(s) | 3407 |
| Psp5II | RGGWCCY | 2 cut(s) | 1672, 2479 |
| Psp6I | CCWGG | 4 cut(s) | 766, 2180, 2464, 2611 |
| PspCI | CACGTG | 1 cut(s) | 2165 |
| PspEI | GGTNACC | 2 cut(s) | 151, 698 |
| PspFI | CCCAGC | 1 cut(s) | 1742 |
| PspGI | CCWGG | 4 cut(s) | 766, 2180, 2464, 2611 |
| PspOMI | GGGCCC | 1 cut(s) | 552 |
| PspPPI | RGGWCCY | 2 cut(s) | 1672, 2479 |
| PstI | CTGCAG | 1 cut(s) | 658 |
| PstNI | CAGNNNCTG | 4 cut(s) | 124, 195, 1610, 1988 |
| PsuI | RGATCY | 5 cut(s) | 740, 944, 976, 1984, 3160 |
| PsyI | GACNNNGTC | 1 cut(s) | 436 |
| PvuII | CAGCTG | 3 cut(s) | 1607, 1649, 3181 |
| RsaI | GTAC | 4 cut(s) | 1156, 2132, 2937, 3329 |
| RsaNI | GTAC | 4 cut(s) | 1155, 2131, 2936, 3328 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1406, 1425, 1691, 2392, 2716, 3319 |
| SalI | GTCGAC | 1 cut(s) | 2560 |
| SchI | GAGTC | 5 cut(s) | 446, 788, 1832, 2516, 2567 |
| ScrFI | CCNGG | 8 cut(s) | 174, 768, 1242, 1774, 1775, 2182, 2466, 2613 |
| SduI | GDGCHC | 4 cut(s) | 556, 1307, 1928, 2976 |
| SexAI | ACCWGGT | 1 cut(s) | 2464 |
| SfcI | CTRYAG | 3 cut(s) | 654, 1547, 1575 |
| SfuI | TTCGAA | 1 cut(s) | 329 |
| SinI | GGWCC | 6 cut(s) | 1672, 2007, 2384, 2479, 2651, 2824 |
| SmaI | CCCGGG | 1 cut(s) | 1775 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1406, 1425, 1691, 2392, 2716, 3319 |
| SmlI | CTYRAG | 2 cut(s) | 1355, 2369 |
| SmoI | CTYRAG | 2 cut(s) | 1355, 2369 |
| SpeI | ACTAGT | 1 cut(s) | 727 |
| SseBI | AGGCCT | 1 cut(s) | 2311 |
| SspI | AATATT | 2 cut(s) | 2873, 3199 |
| SspMI | CTAG | 5 cut(s) | 471, 647, 728, 908, 974 |
| StuI | AGGCCT | 1 cut(s) | 2311 |
| StyD4I | CCNGG | 8 cut(s) | 172, 766, 1240, 1772, 1773, 2180, 2464, 2611 |
| StyI | CCWWGG | 3 cut(s) | 291, 396, 2312 |
| TaaI | ACNGT | 8 cut(s) | 126, 223, 704, 1199, 1309, 1657, 1791, 3371 |
| TaiI | ACGT | 5 cut(s) | 27, 1862, 2167, 3126, 3342 |
| TaqI | TCGA | 5 cut(s) | 329, 442, 1125, 2561, 2989 |
| TaqII | GACCGA | 1 cut(s) | 2372 |
| TatI | WGTACW | 2 cut(s) | 2130, 2935 |
| TauI | GCSGC | 4 cut(s) | 15, 245, 248, 3114 |
| TscAI | CASTG | 7 cut(s) | 585, 1138, 1314, 1522, 2608, 3048, 3376 |
| TseFI | GTSAC | 6 cut(s) | 151, 1264, 1517, 1726, 2452, 2519 |
| TseI | GCWGC | 9 cut(s) | 653, 904, 1110, 1607, 1610, 1646, 2616, 3108, 3181 |
| Tsp45I | GTSAC | 6 cut(s) | 151, 1264, 1517, 1726, 2452, 2519 |
| TspGWI | ACGGA | 4 cut(s) | 82, 338, 1983, 1999 |
| TspMI | CCCGGG | 1 cut(s) | 1773 |
| TspRI | CASTG | 7 cut(s) | 585, 1138, 1314, 1522, 2608, 3048, 3376 |
| Tth111I | GACNNNGTC | 1 cut(s) | 436 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 941 |
| Vha464I | CTTAAG | 2 cut(s) | 1355, 2369 |
| VpaK11BI | GGWCC | 6 cut(s) | 1672, 2007, 2384, 2479, 2651, 2824 |
| VspI | ATTAAT | 2 cut(s) | 831, 3195 |
| XbaI | TCTAGA | 1 cut(s) | 973 |
| XceI | RCATGY | 6 cut(s) | 1108, 1690, 1810, 2405, 3153, 3209 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3226 |
| XmaI | CCCGGG | 1 cut(s) | 1773 |
| XmiI | GTMKAC | 3 cut(s) | 2561, 2689, 3132 |
| XmnI | GAANNNNTTC | 3 cut(s) | 888, 2358, 2572 |
| XspI | CTAG | 5 cut(s) | 471, 647, 728, 908, 974 |
| Zsp2I | ATGCAT | 3 cut(s) | 2233, 2719, 3207 |