Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004853

Physical Location & Seq

Genomic Coordinates Forward (+)

7781826 .. 7784875

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08084.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTTCAGGTTTGATCAGCAACAAGAAGCTACTTTGCTCTTCTAGAGAAACACTTGCTTTCACTGAAAGAAGGCATATTGTCGACAATGAGTTCAGGTTTGATCAGCAACAACTGCCTTCTTCTTCTTCTTCCTCCTTTCTCCGGTGGATCTTCTTCCTTTCTCCGGTCGGAAACCGATCCCCTCCGATCTTCTTTCCCTCTGCCCAGCCGCCGCCTCAAACCTGCAACCCCCGTCGCCTCCGCCTCCACCGTAAAGGAAGAAGAAGCTTCGTCGAAGGAAGGAAGAAGAAGCTTCACCGGAGGAAGGAAGAAGAAGCTTTGCCGGGGAAGAGGAAGGAAGATGACGCCTCCACCAACCCGTGTAAAGGAAGAAGAAGCTTCGCCGGAGGAAGAAAGAAGAAGTGCCGGAGCAGAGGAAGGAAGAGGAAGAAGAAGAACGCAGGCCAAACAAAGATTGGGACAGAACTGAGGAAAGCAAAGATTAAGAGAAAGGGTGCCCTAGACTTACACAAGTTAATTTTTAAAGAAAAAGAGGTATTGTGTGTGGGTGCTCTTTCTGCATTACAGCATTTGACTAATACTTTGTTGCAATTTGAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.11

Weight (kDa)

11.21

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004853)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08084 FvH4_4g17693
malus_domestica	MD13G1170600.v1.1 MD16G1172200.v1.1
prunus_persica	Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1
pyrus_communis	pycom13g14620 pycom16g14450
rosa_chinensis	RchiOBHm_Chr4g0421671
rosa_laevigata	RLG00000007660
rosa_multiflora	Rmu_sc0004533.1_g000012
rosa_roxburghii	Rroxscaffold_5G00363910
rosa_rugosa	Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500
rosa_samantha	Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600
rosa_wichuraiana	Rw0G007710 Rw4G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	212, 215, 244
AclWI	GGATC	2 cut(s)	158, 174
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	144, 166, 307, 368
AgsI	TTSAA	1 cut(s)	599
AluBI	AGCT	5 cut(s)	31, 270, 295, 320, 381
AluI	AGCT	5 cut(s)	31, 270, 295, 320, 381
Alw21I	GWGCWC	1 cut(s)	556
AlwI	GGATC	2 cut(s)	158, 174
AoxI	GGCC	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	556
BclI	TGATCA	2 cut(s)	15, 103
BcnI	CCSGG	1 cut(s)	327
BfaI	CTAG	2 cut(s)	45, 503
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	212, 215
BlsI	GCNGC	2 cut(s)	213, 216
Bme1390I	CCNGG	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	3 cut(s)	144, 166, 300
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 166, 307, 368
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	4 cut(s)	144, 166, 307, 368
BseMII	CTCAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	6 cut(s)	145, 167, 301, 326, 387, 409
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	144, 166, 307, 368
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	502, 556
Bsp143I	GATC	5 cut(s)	15, 103, 150, 179, 189
BspACI	CCGC	3 cut(s)	212, 215, 244
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	2 cut(s)	158, 174
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	5 cut(s)	15, 103, 150, 179, 189
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	3 cut(s)	46, 326, 419
BstACI	GRCGYC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	470
BstKTI	GATC	5 cut(s)	18, 106, 153, 182, 192
BstMBI	GATC	5 cut(s)	15, 103, 150, 179, 189
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 560
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	445
CseI	GACGC	1 cut(s)	356
CviJI	RGCY	7 cut(s)	31, 211, 270, 295, 320, 381, 447
CviKI_1	RGCY	7 cut(s)	31, 211, 270, 295, 320, 381, 447
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	5 cut(s)	17, 105, 152, 181, 191
DpnII	GATC	5 cut(s)	15, 103, 150, 179, 189
DraI	TTTAAA	1 cut(s)	526
Eam1104I	CTCTTC	3 cut(s)	46, 326, 419
EarI	CTCTTC	3 cut(s)	46, 326, 419
EciI	GGCGGA	1 cut(s)	233
FaiI	YATR	1 cut(s)	78
FaqI	GGGAC	1 cut(s)	475
FbaI	TGATCA	2 cut(s)	15, 103
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	212, 215
Fsp4HI	GCNGC	2 cut(s)	212, 215
FspBI	CTAG	2 cut(s)	45, 503
GluI	GCNGC	2 cut(s)	212, 215
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	6 cut(s)	145, 167, 301, 326, 387, 409
HgaI	GACGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	4 cut(s)	268, 293, 318, 379
HpaII	CCGG	6 cut(s)	145, 167, 301, 326, 387, 409
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	173, 189
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	240, 278
HpyAV	CCTTC	7 cut(s)	66, 129, 272, 276, 301, 331, 414
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	3 cut(s)	228, 563, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 560
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	602
Hsp92I	GRCGYC	1 cut(s)	348
Ksp22I	TGATCA	2 cut(s)	15, 103
Kzo9I	GATC	5 cut(s)	15, 103, 150, 179, 189
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	411
MaeI	CTAG	2 cut(s)	45, 503
MaeII	ACGT	1 cut(s)	602
MalI	GATC	5 cut(s)	17, 105, 152, 181, 191
MboI	GATC	5 cut(s)	15, 103, 150, 179, 189
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	502, 556
MluCI	AATT	2 cut(s)	519, 593
MmeI	TCCRAC	1 cut(s)	151
MseI	TTAA	3 cut(s)	486, 518, 525
MspI	CCGG	6 cut(s)	145, 167, 301, 326, 387, 409
MspR9I	CCNGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	115, 560
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	5 cut(s)	15, 103, 150, 179, 189
NlaIV	GGNNCC	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	213, 216
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	486, 518, 525
SatI	GCNGC	2 cut(s)	212, 215
Sau3AI	GATC	5 cut(s)	15, 103, 150, 179, 189
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	502, 556
Sse9I	AATT	2 cut(s)	519, 593
SsiI	CCGC	3 cut(s)	212, 215, 244
SspMI	CTAG	2 cut(s)	45, 503
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	2 cut(s)	84, 276
TasI	AATT	2 cut(s)	519, 593
TauI	GCSGC	2 cut(s)	214, 217
Tru1I	TTAA	3 cut(s)	486, 518, 525
Tru9I	TTAA	3 cut(s)	486, 518, 525
TscAI	CASTG	1 cut(s)	70
TspRI	CASTG	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	45, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.