CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08084 FvH4_4g17693 |
| malus_domestica | MD13G1170600.v1.1 MD16G1172200.v1.1 |
| prunus_persica | Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 |
| pyrus_communis | pycom13g14620 pycom16g14450 |
| rosa_chinensis | RchiOBHm_Chr4g0421671 |
| rosa_laevigata | RLG00000007660 |
| rosa_multiflora | Rmu_sc0004533.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00363910 |
| rosa_rugosa | Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500 |
| rosa_samantha | Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600 |
| rosa_wichuraiana | Rw0G007710 Rw4G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 488 |
| AarI | CACCTGC | 1 cut(s) | 178 |
| Acc36I | ACCTGC | 8 cut(s) | 178, 897, 1655, 1669, 1757, 1806, 1848, 3021 |
| AccB1I | GGYRCC | 2 cut(s) | 3422, 3794 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 239, 1906 |
| AccII | CGCG | 1 cut(s) | 2586 |
| AciI | CCGC | 9 cut(s) | 1178, 1351, 1625, 2586, 3220, 3333, 3344, 3954, 4312 |
| AclWI | GGATC | 7 cut(s) | 1692, 2105, 2404, 2528, 2574, 2611, 3043 |
| AcoI | YGGCCR | 3 cut(s) | 2986, 3802, 4521 |
| AcuI | CTGAAG | 5 cut(s) | 461, 1590, 2190, 2454, 3270 |
| AfaI | GTAC | 9 cut(s) | 919, 1389, 1592, 1659, 1819, 2017, 2130, 3182, 4009 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AhlI | ACTAGT | 2 cut(s) | 2453, 3131 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3487, 3519, 3909, 3941 |
| Alw26I | GTCTC | 6 cut(s) | 201, 234, 1732, 2233, 3840, 4197 |
| AlwI | GGATC | 7 cut(s) | 1692, 2105, 2404, 2528, 2574, 2611, 3043 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 239, 1397, 1406 |
| Ama87I | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| ApeKI | GCWGC | 9 cut(s) | 1397, 1400, 2624, 3341, 3911, 3935, 4070, 4330, 4400 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 668, 700 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 759, 2337 |
| AspS9I | GGNCC | 7 cut(s) | 335, 1268, 1529, 2243, 2730, 3167, 4533 |
| AsuC2I | CCSGG | 3 cut(s) | 622, 623, 2211 |
| AsuHPI | GGTGA | 9 cut(s) | 249, 434, 587, 655, 920, 1741, 1787, 1970, 4199 |
| AsuII | TTCGAA | 2 cut(s) | 49, 4044 |
| AvaI | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| AvaII | GGWCC | 5 cut(s) | 335, 1268, 2730, 3167, 4533 |
| BaeGI | GKGCMC | 3 cut(s) | 3427, 3583, 4036 |
| BalI | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| BanI | GGYRCC | 2 cut(s) | 3422, 3794 |
| BbsI | GAAGAC | 1 cut(s) | 2178 |
| BbvI | GCAGC | 9 cut(s) | 1384, 1412, 2611, 3353, 3898, 3947, 4057, 4317, 4387 |
| BceAI | ACGGC | 1 cut(s) | 3867 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4013, 4047 |
| BciVI | GTATCC | 2 cut(s) | 1138, 1987 |
| BclI | TGATCA | 3 cut(s) | 928, 1879, 1999 |
| BcnI | CCSGG | 3 cut(s) | 622, 623, 2211 |
| BcoDI | GTCTC | 6 cut(s) | 201, 234, 1732, 2233, 3840, 4197 |
| BcuI | ACTAGT | 2 cut(s) | 2453, 3131 |
| BfmI | CTRYAG | 3 cut(s) | 1398, 1653, 1662 |
| BfuAI | ACCTGC | 8 cut(s) | 178, 897, 1655, 1669, 1757, 1806, 1848, 3021 |
| BfuI | GTATCC | 2 cut(s) | 1138, 1987 |
| BglII | AGATCT | 2 cut(s) | 11, 3159 |
| BlpI | GCTNAGC | 1 cut(s) | 4014 |
| BmcAI | AGTACT | 1 cut(s) | 3182 |
| Bme18I | GGWCC | 5 cut(s) | 335, 1268, 2730, 3167, 4533 |
| BmeT110I | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| BmgT120I | GGNCC | 7 cut(s) | 335, 1268, 1529, 2243, 2730, 3167, 4533 |
| BmiI | GGNNCC | 9 cut(s) | 336, 396, 505, 528, 1530, 2656, 3168, 3424, 3796 |
| BmrI | ACTGGG | 1 cut(s) | 380 |
| BmuI | ACTGGG | 1 cut(s) | 380 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3325 |
| BpiI | GAAGAC | 1 cut(s) | 2178 |
| BpmI | CTGGAG | 2 cut(s) | 216, 1883 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4014 |
| Bpu14I | TTCGAA | 2 cut(s) | 49, 4044 |
| BpuEI | CTTGAG | 3 cut(s) | 162, 324, 2699 |
| BpuMI | CCSGG | 3 cut(s) | 622, 623, 2211 |
| BsaAI | YACGTR | 1 cut(s) | 4427 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1998, 2061, 3158, 3205 |
| BsaI | GGTCTC | 1 cut(s) | 2233 |
| BsaWI | WCCGGW | 1 cut(s) | 701 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 214, 244, 518, 548 |
| Bse3DI | GCAATG | 3 cut(s) | 3019, 3989, 4368 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1998, 2061, 3158, 3205 |
| BseJI | GATNNNNATC | 4 cut(s) | 1998, 2061, 3158, 3205 |
| BseMI | GCAATG | 3 cut(s) | 3019, 3989, 4368 |
| BseSI | GKGCMC | 3 cut(s) | 3427, 3583, 4036 |
| BseXI | GCAGC | 9 cut(s) | 1384, 1412, 2611, 3353, 3898, 3947, 4057, 4317, 4387 |
| BseYI | CCCAGC | 2 cut(s) | 1525, 2832 |
| BsgI | GTGCAG | 3 cut(s) | 875, 1142, 3360 |
| Bsh1236I | CGCG | 1 cut(s) | 2586 |
| BshNI | GGYRCC | 2 cut(s) | 3422, 3794 |
| BsiHKCI | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| BsiSI | CCGG | 3 cut(s) | 622, 702, 2210 |
| BslFI | GGGAC | 3 cut(s) | 3323, 3333, 3747 |
| BsmAI | GTCTC | 6 cut(s) | 201, 234, 1732, 2233, 3840, 4197 |
| BsmBI | CGTCTC | 1 cut(s) | 234 |
| BsmFI | GGGAC | 3 cut(s) | 3323, 3333, 3747 |
| BsmI | GAATGC | 3 cut(s) | 863, 1768, 2901 |
| Bso31I | GGTCTC | 1 cut(s) | 2233 |
| BsoBI | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| Bsp119I | TTCGAA | 2 cut(s) | 49, 4044 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3427, 3583, 4036 |
| Bsp1407I | TGTACA | 1 cut(s) | 1817 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4014 |
| BspACI | CCGC | 9 cut(s) | 1178, 1351, 1625, 2586, 3220, 3333, 3344, 3954, 4312 |
| BspFNI | CGCG | 1 cut(s) | 2586 |
| BspHI | TCATGA | 5 cut(s) | 265, 925, 2962, 3028, 3226 |
| BspLI | GGNNCC | 9 cut(s) | 336, 396, 505, 528, 1530, 2656, 3168, 3424, 3796 |
| BspMAI | CTGCAG | 2 cut(s) | 1402, 1666 |
| BspMI | ACCTGC | 8 cut(s) | 178, 897, 1655, 1669, 1757, 1806, 1848, 3021 |
| BspPI | GGATC | 7 cut(s) | 1692, 2105, 2404, 2528, 2574, 2611, 3043 |
| BspQI | GCTCTTC | 2 cut(s) | 873, 2644 |
| BspT104I | TTCGAA | 2 cut(s) | 49, 4044 |
| BspT107I | GGYRCC | 2 cut(s) | 3422, 3794 |
| BspTNI | GGTCTC | 1 cut(s) | 2233 |
| BsrDI | GCAATG | 3 cut(s) | 3019, 3989, 4368 |
| BsrGI | TGTACA | 1 cut(s) | 1817 |
| BssT1I | CCWWGG | 2 cut(s) | 1260, 2083 |
| Bst4CI | ACNGT | 9 cut(s) | 272, 590, 771, 1150, 1163, 2932, 3518, 3872, 4121 |
| Bst6I | CTCTTC | 5 cut(s) | 267, 873, 1730, 2644, 3567 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1583, 1670, 3013, 4156 |
| BstAUI | TGTACA | 1 cut(s) | 1817 |
| BstBAI | YACGTR | 1 cut(s) | 4427 |
| BstBI | TTCGAA | 2 cut(s) | 49, 4044 |
| BstC8I | GCNNGC | 6 cut(s) | 432, 1514, 2052, 3971, 4161, 4405 |
| BstDSI | CCRYGG | 1 cut(s) | 3871 |
| BstEII | GGTNACC | 1 cut(s) | 625 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3789, 4182 |
| BstFNI | CGCG | 1 cut(s) | 2586 |
| BstMAI | GTCTC | 6 cut(s) | 201, 234, 1732, 2233, 3840, 4197 |
| BstNSI | RCATGY | 8 cut(s) | 248, 319, 1516, 1720, 2054, 2265, 2615, 4514 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3325 |
| BstPI | GGTNACC | 1 cut(s) | 625 |
| BstSFI | CTRYAG | 3 cut(s) | 1398, 1653, 1662 |
| BstSLI | GKGCMC | 3 cut(s) | 3427, 3583, 4036 |
| BstUI | CGCG | 1 cut(s) | 2586 |
| BstV1I | GCAGC | 9 cut(s) | 1384, 1412, 2611, 3353, 3898, 3947, 4057, 4317, 4387 |
| BstV2I | GAAGAC | 1 cut(s) | 2178 |
| BstX2I | RGATCY | 5 cut(s) | 11, 2396, 2603, 3048, 3159 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 571, 905, 2132 |
| BstYI | RGATCY | 5 cut(s) | 11, 2396, 2603, 3048, 3159 |
| BsuI | GTATCC | 2 cut(s) | 1138, 1987 |
| BtgI | CCRYGG | 1 cut(s) | 3871 |
| BtsI | GCAGTG | 2 cut(s) | 3343, 4521 |
| BveI | ACCTGC | 8 cut(s) | 178, 897, 1655, 1669, 1757, 1806, 1848, 3021 |
| Cac8I | GCNNGC | 6 cut(s) | 432, 1514, 2052, 3971, 4161, 4405 |
| CaiI | CAGNNNCTG | 3 cut(s) | 239, 1397, 1406 |
| CciI | TCATGA | 5 cut(s) | 265, 925, 2962, 3028, 3226 |
| Cfr13I | GGNCC | 7 cut(s) | 335, 1268, 1529, 2243, 2730, 3167, 4533 |
| Cfr9I | CCCGGG | 1 cut(s) | 621 |
| CsiI | ACCWGGT | 1 cut(s) | 1021 |
| Csp6I | GTAC | 9 cut(s) | 918, 1388, 1591, 1658, 1818, 2016, 2129, 3181, 4008 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3853, 3888, 4525, 4560 |
| CviQI | GTAC | 9 cut(s) | 918, 1388, 1591, 1658, 1818, 2016, 2129, 3181, 4008 |
| DraI | TTTAAA | 1 cut(s) | 2427 |
| EaeI | YGGCCR | 3 cut(s) | 2986, 3802, 4521 |
| Eam1104I | CTCTTC | 5 cut(s) | 267, 873, 1730, 2644, 3567 |
| EarI | CTCTTC | 5 cut(s) | 267, 873, 1730, 2644, 3567 |
| Eco130I | CCWWGG | 2 cut(s) | 1260, 2083 |
| Eco147I | AGGCCT | 1 cut(s) | 1225 |
| Eco31I | GGTCTC | 1 cut(s) | 2233 |
| Eco32I | GATATC | 1 cut(s) | 699 |
| Eco47I | GGWCC | 5 cut(s) | 335, 1268, 2730, 3167, 4533 |
| Eco57I | CTGAAG | 5 cut(s) | 461, 1590, 2190, 2454, 3270 |
| Eco88I | CYCGRG | 3 cut(s) | 621, 3163, 3597 |
| Eco91I | GGTNACC | 1 cut(s) | 625 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3789, 4182 |
| EcoO109I | RGGNCCY | 3 cut(s) | 335, 1529, 2730 |
| EcoO65I | GGTNACC | 1 cut(s) | 625 |
| EcoRI | GAATTC | 2 cut(s) | 4040, 4490 |
| EcoRV | GATATC | 1 cut(s) | 699 |
| EcoT14I | CCWWGG | 2 cut(s) | 1260, 2083 |
| EcoT22I | ATGCAT | 3 cut(s) | 1588, 3208, 4091 |
| ErhI | CCWWGG | 2 cut(s) | 1260, 2083 |
| Esp3I | CGTCTC | 1 cut(s) | 234 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 643, 675, 1028, 1060, 2383, 2415 |
| FaqI | GGGAC | 3 cut(s) | 3323, 3333, 3747 |
| FauI | CCCGC | 1 cut(s) | 1632 |
| FbaI | TGATCA | 3 cut(s) | 928, 1879, 1999 |
| GsaI | CCCAGC | 2 cut(s) | 1529, 2836 |
| GsuI | CTGGAG | 2 cut(s) | 216, 1883 |
| HapII | CCGG | 3 cut(s) | 622, 702, 2210 |
| HincII | GTYRAC | 1 cut(s) | 586 |
| HindII | GTYRAC | 1 cut(s) | 586 |
| HindIII | AAGCTT | 5 cut(s) | 299, 1042, 1822, 2675, 4016 |
| HpaII | CCGG | 3 cut(s) | 622, 702, 2210 |
| HphI | GGTGA | 9 cut(s) | 249, 434, 587, 655, 920, 1741, 1787, 1970, 4199 |
| Hpy166II | GTNNAC | 6 cut(s) | 586, 1330, 1818, 4117, 4124, 4498 |
| Hpy8I | GTNNAC | 6 cut(s) | 586, 1330, 1818, 4117, 4124, 4498 |
| Hpy99I | CGWCG | 3 cut(s) | 152, 1200, 3887 |
| HpyCH4III | ACNGT | 9 cut(s) | 272, 590, 771, 1150, 1163, 2932, 3518, 3872, 4121 |
| HpyCH4IV | ACGT | 2 cut(s) | 87, 4426 |
| HpySE526I | ACGT | 2 cut(s) | 87, 4426 |
| Ksp22I | TGATCA | 3 cut(s) | 928, 1879, 1999 |
| LguI | GCTCTTC | 2 cut(s) | 873, 2644 |
| LmnI | GCTCC | 5 cut(s) | 394, 526, 1408, 3758, 3932 |
| Lsp1109I | GCAGC | 9 cut(s) | 1384, 1412, 2611, 3353, 3898, 3947, 4057, 4317, 4387 |
| MabI | ACCWGGT | 1 cut(s) | 1021 |
| MaeII | ACGT | 2 cut(s) | 87, 4426 |
| MfeI | CAATTG | 1 cut(s) | 1359 |
| MflI | RGATCY | 5 cut(s) | 11, 2396, 2603, 3048, 3159 |
| MhlI | GDGCHC | 3 cut(s) | 3427, 3583, 4036 |
| MlsI | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| MluNI | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| MlyI | GAGTC | 9 cut(s) | 203, 692, 701, 2453, 2687, 3086, 3202, 3979, 4199 |
| MmeI | TCCRAC | 1 cut(s) | 588 |
| Mox20I | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| Mph1103I | ATGCAT | 3 cut(s) | 1588, 3208, 4091 |
| MroXI | GAANNNNTTC | 2 cut(s) | 759, 2337 |
| MscI | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| MslI | CAYNNNNRTG | 7 cut(s) | 711, 792, 868, 1638, 2896, 4094, 4185 |
| Msp20I | TGGCCA | 3 cut(s) | 2988, 3804, 4523 |
| MspA1I | CMGCKG | 3 cut(s) | 26, 3344, 4400 |
| MspI | CCGG | 3 cut(s) | 622, 702, 2210 |
| MunI | CAATTG | 1 cut(s) | 1359 |
| Mva1269I | GAATGC | 3 cut(s) | 863, 1768, 2901 |
| MvnI | CGCG | 1 cut(s) | 2586 |
| NciI | CCSGG | 3 cut(s) | 622, 623, 2211 |
| NlaIV | GGNNCC | 9 cut(s) | 336, 396, 505, 528, 1530, 2656, 3168, 3424, 3796 |
| NmuCI | GTSAC | 5 cut(s) | 255, 713, 1547, 3134, 4237 |
| NsiI | ATGCAT | 3 cut(s) | 1588, 3208, 4091 |
| NspI | RCATGY | 8 cut(s) | 248, 319, 1516, 1720, 2054, 2265, 2615, 4514 |
| NspV | TTCGAA | 2 cut(s) | 49, 4044 |
| PaeI | GCATGC | 2 cut(s) | 1516, 2054 |
| PaeR7I | CTCGAG | 1 cut(s) | 3597 |
| PagI | TCATGA | 5 cut(s) | 265, 925, 2962, 3028, 3226 |
| PaqCI | CACCTGC | 1 cut(s) | 178 |
| PceI | AGGCCT | 1 cut(s) | 1225 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 2 cut(s) | 873, 2644 |
| PctI | GAATGC | 3 cut(s) | 863, 1768, 2901 |
| PdmI | GAANNNNTTC | 2 cut(s) | 759, 2337 |
| PfeI | GAWTC | 8 cut(s) | 51, 1169, 2581, 2705, 2802, 2912, 3442, 4321 |
| PflFI | GACNNNGTC | 1 cut(s) | 226 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 239, 1906 |
| PleI | GAGTC | 9 cut(s) | 202, 691, 700, 2452, 2687, 3086, 3201, 3979, 4198 |
| PpsI | GAGTC | 9 cut(s) | 202, 691, 700, 2452, 2687, 3086, 3201, 3979, 4198 |
| Ppu21I | YACGTR | 1 cut(s) | 4427 |
| PpuMI | RGGWCCY | 2 cut(s) | 335, 2730 |
| PscI | ACATGT | 1 cut(s) | 315 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3325 |
| PsiI | TTATAA | 1 cut(s) | 488 |
| Psp5II | RGGWCCY | 2 cut(s) | 335, 2730 |
| PspEI | GGTNACC | 1 cut(s) | 625 |
| PspFI | CCCAGC | 2 cut(s) | 1525, 2832 |
| PspN4I | GGNNCC | 9 cut(s) | 336, 396, 505, 528, 1530, 2656, 3168, 3424, 3796 |
| PspPI | GGNCC | 7 cut(s) | 335, 1268, 1529, 2243, 2730, 3167, 4533 |
| PspPPI | RGGWCCY | 2 cut(s) | 335, 2730 |
| PstI | CTGCAG | 2 cut(s) | 1402, 1666 |
| PstNI | CAGNNNCTG | 3 cut(s) | 239, 1397, 1406 |
| PsuI | RGATCY | 5 cut(s) | 11, 2396, 2603, 3048, 3159 |
| PsyI | GACNNNGTC | 1 cut(s) | 226 |
| PvuII | CAGCTG | 2 cut(s) | 26, 4400 |
| RsaI | GTAC | 9 cut(s) | 919, 1389, 1592, 1659, 1819, 2017, 2130, 3182, 4009 |
| RsaNI | GTAC | 9 cut(s) | 918, 1388, 1591, 1658, 1818, 2016, 2129, 3181, 4008 |
| RseI | CAYNNNNRTG | 7 cut(s) | 711, 792, 868, 1638, 2896, 4094, 4185 |
| SapI | GCTCTTC | 2 cut(s) | 873, 2644 |
| Sau96I | GGNCC | 7 cut(s) | 335, 1268, 1529, 2243, 2730, 3167, 4533 |
| SbfI | CCTGCAGG | 1 cut(s) | 1666 |
| ScaI | AGTACT | 1 cut(s) | 3182 |
| SchI | GAGTC | 9 cut(s) | 203, 692, 701, 2453, 2687, 3086, 3202, 3979, 4199 |
| SdaI | CCTGCAGG | 1 cut(s) | 1666 |
| SduI | GDGCHC | 3 cut(s) | 3427, 3583, 4036 |
| SexAI | ACCWGGT | 1 cut(s) | 1021 |
| SfcI | CTRYAG | 3 cut(s) | 1398, 1653, 1662 |
| Sfr274I | CTCGAG | 1 cut(s) | 3597 |
| SfuI | TTCGAA | 2 cut(s) | 49, 4044 |
| SinI | GGWCC | 5 cut(s) | 335, 1268, 2730, 3167, 4533 |
| SlaI | CTCGAG | 1 cut(s) | 3597 |
| SmaI | CCCGGG | 1 cut(s) | 623 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 711, 792, 868, 1638, 2896, 4094, 4185 |
| SmlI | CTYRAG | 4 cut(s) | 177, 339, 2678, 3597 |
| SmoI | CTYRAG | 4 cut(s) | 177, 339, 2678, 3597 |
| SpeI | ACTAGT | 2 cut(s) | 2453, 3131 |
| SphI | GCATGC | 2 cut(s) | 1516, 2054 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1666 |
| SseBI | AGGCCT | 1 cut(s) | 1225 |
| SsiI | CCGC | 9 cut(s) | 1178, 1351, 1625, 2586, 3220, 3333, 3344, 3954, 4312 |
| SspI | AATATT | 3 cut(s) | 2461, 2557, 3118 |
| StuI | AGGCCT | 1 cut(s) | 1225 |
| StyI | CCWWGG | 2 cut(s) | 1260, 2083 |
| TaaI | ACNGT | 9 cut(s) | 272, 590, 771, 1150, 1163, 2932, 3518, 3872, 4121 |
| TaiI | ACGT | 2 cut(s) | 90, 4429 |
| TaqI | TCGA | 7 cut(s) | 31, 49, 695, 3598, 4044, 4306, 4335 |
| TaqII | GACCGA | 1 cut(s) | 4521 |
| TatI | WGTACW | 5 cut(s) | 917, 1817, 2128, 3180, 4007 |
| TauI | GCSGC | 3 cut(s) | 1181, 1353, 3336 |
| TfiI | GAWTC | 8 cut(s) | 51, 1169, 2581, 2705, 2802, 2912, 3442, 4321 |
| TseFI | GTSAC | 5 cut(s) | 255, 713, 1547, 3134, 4237 |
| TseI | GCWGC | 9 cut(s) | 1397, 1400, 2624, 3341, 3911, 3935, 4070, 4330, 4400 |
| Tsp45I | GTSAC | 5 cut(s) | 255, 713, 1547, 3134, 4237 |
| TspGWI | ACGGA | 2 cut(s) | 1281, 2272 |
| TspMI | CCCGGG | 1 cut(s) | 621 |
| Tth111I | GACNNNGTC | 1 cut(s) | 226 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 239, 1906 |
| VpaK11BI | GGWCC | 5 cut(s) | 335, 1268, 2730, 3167, 4533 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3789, 4182 |
| XceI | RCATGY | 8 cut(s) | 248, 319, 1516, 1720, 2054, 2265, 2615, 4514 |
| XhoI | CTCGAG | 1 cut(s) | 3597 |
| XmaI | CCCGGG | 1 cut(s) | 621 |
| XmnI | GAANNNNTTC | 2 cut(s) | 759, 2337 |
| ZrmI | AGTACT | 1 cut(s) | 3182 |
| Zsp2I | ATGCAT | 3 cut(s) | 1588, 3208, 4091 |