Rorug04G0174500

CW-type Zinc Finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004853
Physical Location & Seq
Reverse (-)
30672194 .. 30674224
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0174500.1

Sequence Viewer

Length: 1104 bp
ATGCAAAAACAGCGCTGGTATGTTGCGGATAATGGTGTTTATTCAAAACTGATCTCGGTTATGGGAAAGAAGGGACAAACACGGATGGCTATGTGGTTGTTCTCTGAGATGCGGAATAGTGGGTGCCGCCCTGATACTTCTGTTTATAATGCACTCATCTCGGCCCACCTTAACAGCAAGGACAAAGGGAAGGCGTTGGAGAAAGCGCTCGTGTACTTTAACAAGATGAAGGGAATGGAAAGGTGTCAGCCGAATATTGTCACGTACAATATTCTCTTGAGAGCTTTTGCGCAGAGTCGAAATGTAGAAAAAGTCAGTTCTTTGTTTAAAGATCTTGATGAGAGCATAGCTTCCCCTGATATCTATACGTACAATGGTGTAATGGATGCGTATGGGAAAAATGGGATGATCAGAGATATGGAATCTGTGCTTTCTCGCATGAAAAGTAATCAATGCAAGCCCGATACCATCACCTTCAACCTGTTGATTGATTCATACGGGAAGAAGCAGCAATTTGACAAGATGGAACAGGTATTTAAGAGCTTACTCCATTCCAAGGAGAGACCAACTCTCCCTACATTTAATTCAATGATCATAAATTATGGGAAGGCGAGGCTTAAAGAGCAAGCGGAATCTGTGTTTAAGAAGATGATTGACATGAAATACTCTCCTAGCTTCATTACATATGAGAGTCTTATCATGATGTACGGCTACTGTGACTCTGTTTCAAAAGCTAGGGAGATATTTGATGGGGTGGCTGAATCTGGACAGGAGATGAAGGTGTCAACGTTTAATGTGATGCTTGATGTATACTGCAGGAATGGTTTGCCCATGGAAGCAGATAAGCTTTTGCTGAGTGCAAATAGTATTGGGATACGCCCAAATGTATCTACGTATAAACTTCTGTACAAGGCTTACACTAAAGCTAACATGAAGGAGCTTCTAGACAAATTGCTAAAGTCCATGGACAAAGATGGTATTGTCCCTAATAAGAGGTTCTTTCTAGAGGCTTTGGGAGCATTTTTGTCTTCAACAGGGAGTCCAGAGTCTGGGAGTGCCTCAACAGGTTTGAGCAGGCCACAGGATGAGGTGCTGAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CW

Protein Analysis

367

Amino Acids

41.59

Weight (kDa)

9.32

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 13 - 56 4.8e-09 PPR repeat family
PPR_long PF17177 22 - 155 4.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 33 - 96 5.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 44 - 97 2.7e-10 PPR repeat family
PPR_3 PF13812 83 - 134 7.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 84 - 130 3.7e-10 PPR repeat family
PPR_3 PF13812 108 - 168 1.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 119 - 167 1.4e-12 PPR repeat family
PPR PF01535 122 - 152 1.7e-06 PPR repeat
PPR_2 PF13041 154 - 198 1e-06 PPR repeat family
PPR_2 PF13041 261 - 306 2.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 810
AciI CCGC 4 cut(s) 26, 112, 127, 629
AclI AACGTT 1 cut(s) 788
AcsI RAATTY 1 cut(s) 1098
AfaI GTAC 5 cut(s) 215, 266, 371, 707, 908
AfeI AGCGCT 2 cut(s) 14, 207
AfiI CCNNNNNNNGG 2 cut(s) 556, 1049
AgsI TTSAA 5 cut(s) 45, 478, 588, 729, 1032
AluBI AGCT 8 cut(s) 284, 350, 543, 675, 734, 847, 926, 940
AluI AGCT 8 cut(s) 284, 350, 543, 675, 734, 847, 926, 940
Alw26I GTCTC 1 cut(s) 556
AlwNI CAGNNNCTG 1 cut(s) 1049
Aor51HI AGCGCT 2 cut(s) 14, 207
AoxI GGCC 2 cut(s) 162, 1076
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 1098
AspLEI GCGC 3 cut(s) 15, 208, 292
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 463
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BanI GGYRCC 1 cut(s) 123
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 1020
BbvI GCAGC 1 cut(s) 520
BccI CCATC 5 cut(s) 79, 476, 517, 743, 968
BceAI ACGGC 1 cut(s) 724
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciVI GTATCC 1 cut(s) 867
BclI TGATCA 2 cut(s) 408, 591
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 4 cut(s) 672, 735, 944, 1004
BfmI CTRYAG 1 cut(s) 814
BfoI RGCGCY 2 cut(s) 16, 209
BfuI GTATCC 1 cut(s) 867
BglII AGATCT 1 cut(s) 331
BisI GCNGC 2 cut(s) 127, 509
BlsI GCNGC 2 cut(s) 128, 510
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 125
BmsI GCATC 3 cut(s) 99, 376, 789
BpiI GAAGAC 1 cut(s) 1020
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpuEI CTTGAG 1 cut(s) 298
BsaAI YACGTR 3 cut(s) 264, 369, 894
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 3 cut(s) 555, 831, 963
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 1049
BseDI CCNNGG 3 cut(s) 555, 831, 963
BseGI GGATG 4 cut(s) 90, 391, 411, 1090
BseLI CCNNNNNNNGG 2 cut(s) 556, 1049
BseMII CTCAG 2 cut(s) 96, 845
BseXI GCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 164, 1078
BshNI GGYRCC 1 cut(s) 123
BslFI GGGAC 2 cut(s) 87, 968
BslI CCNNNNNNNGG 2 cut(s) 556, 1049
BsmAI GTCTC 1 cut(s) 556
BsmFI GGGAC 2 cut(s) 87, 968
BsnI GGCC 2 cut(s) 164, 1078
Bso31I GGTCTC 1 cut(s) 556
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 4 cut(s) 51, 331, 408, 591
Bsp19I CCATGG 2 cut(s) 831, 963
BspACI CCGC 4 cut(s) 26, 112, 127, 629
BspANI GGCC 2 cut(s) 164, 1078
BspCNI CTCAG 2 cut(s) 97, 846
BspHI TCATGA 1 cut(s) 699
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 818
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 906
BssECI CCNNGG 3 cut(s) 555, 831, 963
BssMI GATC 4 cut(s) 51, 331, 408, 591
BssNAI GTATAC 1 cut(s) 811
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 3 cut(s) 555, 831, 963
Bst1107I GTATAC 1 cut(s) 811
Bst2BI CACGAG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 906
BstBAI YACGTR 3 cut(s) 264, 369, 894
BstC8I GCNNGC 3 cut(s) 458, 627, 1076
BstDEI CTNAG 2 cut(s) 105, 854
BstDSI CCRYGG 2 cut(s) 831, 963
BstF5I GGATG 4 cut(s) 90, 391, 411, 1090
BstH2I RGCGCY 2 cut(s) 16, 209
BstHHI GCGC 3 cut(s) 15, 208, 292
BstKTI GATC 4 cut(s) 54, 334, 411, 594
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 4 cut(s) 51, 331, 408, 591
BstMWI GCNNNNNNNGC 3 cut(s) 10, 622, 1016
BstSFI CTRYAG 1 cut(s) 814
BstSNI TACGTA 2 cut(s) 369, 894
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 811
BsuI GTATCC 1 cut(s) 867
BsuRI GGCC 2 cut(s) 164, 1078
BtgI CCRYGG 2 cut(s) 831, 963
BtsCI GGATG 4 cut(s) 90, 391, 411, 1090
Cac8I GCNNGC 3 cut(s) 458, 627, 1076
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 1 cut(s) 699
CfoI GCGC 3 cut(s) 15, 208, 292
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 5 cut(s) 214, 265, 370, 706, 907
CviAII CATG 6 cut(s) 439, 658, 700, 832, 931, 964
CviQI GTAC 5 cut(s) 214, 265, 370, 706, 907
DdeI CTNAG 2 cut(s) 105, 854
DpnI GATC 4 cut(s) 53, 333, 410, 593
DpnII GATC 4 cut(s) 51, 331, 408, 591
DraI TTTAAA 1 cut(s) 328
Eco105I TACGTA 2 cut(s) 369, 894
Eco130I CCWWGG 3 cut(s) 555, 831, 963
Eco31I GGTCTC 1 cut(s) 556
Eco32I GATATC 1 cut(s) 361
Eco47III AGCGCT 2 cut(s) 14, 207
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 555, 831, 963
ErhI CCWWGG 3 cut(s) 555, 831, 963
FaeI CATG 6 cut(s) 442, 661, 703, 835, 934, 967
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 2 cut(s) 87, 968
FatI CATG 6 cut(s) 438, 657, 699, 831, 930, 963
FauNDI CATATG 1 cut(s) 685
FbaI TGATCA 2 cut(s) 408, 591
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 2 cut(s) 127, 509
FokI GGATG 4 cut(s) 97, 398, 418, 1097
Fsp4HI GCNGC 2 cut(s) 127, 509
FspBI CTAG 4 cut(s) 672, 735, 944, 1004
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 3 cut(s) 14, 207, 291
GluI GCNGC 2 cut(s) 127, 509
HaeII RGCGCY 2 cut(s) 16, 209
HaeIII GGCC 2 cut(s) 164, 1078
HhaI GCGC 3 cut(s) 15, 208, 292
Hin1II CATG 6 cut(s) 442, 661, 703, 835, 934, 967
Hin6I GCGC 3 cut(s) 13, 206, 290
HinP1I GCGC 3 cut(s) 13, 206, 290
HincII GTYRAC 1 cut(s) 786
HindII GTYRAC 1 cut(s) 786
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 9 cut(s) 295, 422, 491, 632, 691, 719, 761, 1039, 1046
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 214, 786, 811
Hpy188I TCNGA 2 cut(s) 106, 413
Hpy188III TCNNGA 7 cut(s) 277, 335, 700, 765, 944, 1004, 1043
Hpy8I GTNNAC 3 cut(s) 214, 786, 811
HpyAV CCTTC 7 cut(s) 64, 184, 223, 484, 601, 772, 928
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 4 cut(s) 263, 368, 788, 893
HpyCH4V TGCA 5 cut(s) 4, 152, 456, 816, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 622, 1016
HpyF3I CTNAG 2 cut(s) 105, 854
HpySE526I ACGT 4 cut(s) 263, 368, 788, 893
Hsp92II CATG 6 cut(s) 442, 661, 703, 835, 934, 967
HspAI GCGC 3 cut(s) 13, 206, 290
Ksp22I TGATCA 2 cut(s) 408, 591
Kzo9I GATC 4 cut(s) 51, 331, 408, 591
LmnI GCTCC 2 cut(s) 937, 1016
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 3 cut(s) 99, 376, 789
MaeI CTAG 4 cut(s) 672, 735, 944, 1004
MaeII ACGT 4 cut(s) 263, 368, 788, 893
MaeIII GTNAC 2 cut(s) 259, 716
MalI GATC 4 cut(s) 53, 333, 410, 593
MboI GATC 4 cut(s) 51, 331, 408, 591
MboII GAAGA 3 cut(s) 514, 658, 1020
MflI RGATCY 1 cut(s) 331
MluCI AATT 5 cut(s) 512, 583, 598, 950, 1098
MlyI GAGTC 5 cut(s) 304, 700, 713, 1048, 1055
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 5 cut(s) 606, 987, 1000, 1069, 1081
MseI TTAA 8 cut(s) 171, 219, 327, 537, 582, 618, 642, 792
MwoI GCNNNNNNNGC 3 cut(s) 10, 622, 1016
NcoI CCATGG 2 cut(s) 831, 963
NdeI CATATG 1 cut(s) 685
NdeII GATC 4 cut(s) 51, 331, 408, 591
NlaIII CATG 6 cut(s) 442, 661, 703, 835, 934, 967
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 259, 716
NsbI TGCGCA 1 cut(s) 291
PagI TCATGA 1 cut(s) 699
PfeI GAWTC 4 cut(s) 422, 491, 632, 761
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 2 cut(s) 128, 510
PleI GAGTC 5 cut(s) 303, 699, 713, 1047, 1054
PpsI GAGTC 5 cut(s) 303, 699, 713, 1047, 1054
Ppu21I YACGTR 3 cut(s) 264, 369, 894
PsiI TTATAA 1 cut(s) 147
Psp1406I AACGTT 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 818
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 5 cut(s) 215, 266, 371, 707, 908
RsaNI GTAC 5 cut(s) 214, 265, 370, 706, 907
SaqAI TTAA 8 cut(s) 171, 219, 327, 537, 582, 618, 642, 792
SatI GCNGC 2 cut(s) 127, 509
Sau3AI GATC 4 cut(s) 51, 331, 408, 591
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 5 cut(s) 304, 700, 713, 1048, 1055
SfaNI GCATC 3 cut(s) 99, 376, 789
SfcI CTRYAG 1 cut(s) 814
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SnaBI TACGTA 2 cut(s) 369, 894
Sse9I AATT 5 cut(s) 512, 583, 598, 950, 1098
SsiI CCGC 4 cut(s) 26, 112, 127, 629
SspI AATATT 2 cut(s) 256, 271
SspMI CTAG 4 cut(s) 672, 735, 944, 1004
StyI CCWWGG 3 cut(s) 555, 831, 963
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 4 cut(s) 266, 371, 791, 896
TaqI TCGA 1 cut(s) 298
TasI AATT 5 cut(s) 512, 583, 598, 950, 1098
TatI WGTACW 2 cut(s) 213, 906
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 4 cut(s) 422, 491, 632, 761
Tru1I TTAA 8 cut(s) 171, 219, 327, 537, 582, 618, 642, 792
Tru9I TTAA 8 cut(s) 171, 219, 327, 537, 582, 618, 642, 792
TseFI GTSAC 2 cut(s) 259, 716
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 2 cut(s) 259, 716
TspDTI ATGAA 7 cut(s) 242, 455, 483, 667, 674, 791, 947
TspGWI ACGGA 1 cut(s) 97
Van91I CCANNNNNTGG 1 cut(s) 1049
XapI RAATTY 1 cut(s) 1098
XbaI TCTAGA 2 cut(s) 943, 1003
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 4 cut(s) 672, 735, 944, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.