CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08084 FvH4_4g17693 |
| malus_domestica | MD13G1170600.v1.1 MD16G1172200.v1.1 |
| prunus_persica | Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 |
| pyrus_communis | pycom13g14620 pycom16g14450 |
| rosa_chinensis | RchiOBHm_Chr4g0421671 |
| rosa_laevigata | RLG00000007660 |
| rosa_multiflora | Rmu_sc0004533.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00363910 |
| rosa_rugosa | Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500 |
| rosa_samantha | Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600 |
| rosa_wichuraiana | Rw0G007710 Rw4G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 671 |
| AarI | CACCTGC | 1 cut(s) | 361 |
| Acc36I | ACCTGC | 6 cut(s) | 361, 604, 1080, 1940, 2031, 3204 |
| AccB1I | GGYRCC | 3 cut(s) | 8, 3605, 3971 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 422, 2089 |
| AccBSI | CCGCTC | 1 cut(s) | 4491 |
| AccII | CGCG | 1 cut(s) | 2769 |
| AciI | CCGC | 6 cut(s) | 1361, 1808, 2769, 3403, 4131, 4489 |
| AclWI | GGATC | 8 cut(s) | 1875, 2288, 2587, 2711, 2757, 2794, 3226, 3258 |
| AcoI | YGGCCR | 3 cut(s) | 3169, 3979, 4698 |
| AcuI | CTGAAG | 5 cut(s) | 644, 1773, 1830, 2637, 3453 |
| AflIII | ACRYGT | 1 cut(s) | 498 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3548 |
| AhlI | ACTAGT | 2 cut(s) | 2636, 3314 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3670, 3702, 4086, 4118 |
| Alw26I | GTCTC | 6 cut(s) | 384, 417, 1915, 2416, 4017, 4374 |
| AlwI | GGATC | 8 cut(s) | 1875, 2288, 2587, 2711, 2757, 2794, 3226, 3258 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 422, 689, 1580, 1589 |
| Ama87I | CYCGRG | 2 cut(s) | 804, 3346 |
| ApeKI | GCWGC | 9 cut(s) | 1580, 1583, 2807, 3524, 4088, 4112, 4247, 4507, 4577 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 851, 883 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 67, 942, 2520, 3807 |
| AspLEI | GCGC | 1 cut(s) | 43 |
| AspS9I | GGNCC | 6 cut(s) | 518, 1712, 2426, 2913, 3350, 4710 |
| AsuC2I | CCSGG | 4 cut(s) | 805, 806, 2394, 2546 |
| AsuHPI | GGTGA | 7 cut(s) | 432, 617, 770, 1103, 1924, 2153, 4376 |
| AsuII | TTCGAA | 2 cut(s) | 232, 4221 |
| AvaI | CYCGRG | 2 cut(s) | 804, 3346 |
| AvaII | GGWCC | 4 cut(s) | 518, 2913, 3350, 4710 |
| BaeGI | GKGCMC | 3 cut(s) | 3610, 3763, 4213 |
| BalI | TGGCCA | 2 cut(s) | 3171, 3981 |
| BanI | GGYRCC | 3 cut(s) | 8, 3605, 3971 |
| BbsI | GAAGAC | 1 cut(s) | 2361 |
| BbvI | GCAGC | 9 cut(s) | 1567, 1595, 2794, 3536, 4075, 4124, 4234, 4494, 4564 |
| BceAI | ACGGC | 2 cut(s) | 4044, 4713 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4190, 4224 |
| BciVI | GTATCC | 1 cut(s) | 1321 |
| BclI | TGATCA | 3 cut(s) | 1111, 2062, 2182 |
| BcnI | CCSGG | 4 cut(s) | 805, 806, 2394, 2546 |
| BcoDI | GTCTC | 6 cut(s) | 384, 417, 1915, 2416, 4017, 4374 |
| BcuI | ACTAGT | 2 cut(s) | 2636, 3314 |
| BfmI | CTRYAG | 2 cut(s) | 1581, 1836 |
| BfuAI | ACCTGC | 6 cut(s) | 361, 604, 1080, 1940, 2031, 3204 |
| BfuI | GTATCC | 1 cut(s) | 1321 |
| BglII | AGATCT | 2 cut(s) | 194, 3342 |
| BlpI | GCTNAGC | 1 cut(s) | 4191 |
| BmcAI | AGTACT | 1 cut(s) | 3365 |
| Bme18I | GGWCC | 4 cut(s) | 518, 2913, 3350, 4710 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3548 |
| BmeT110I | CYCGRG | 2 cut(s) | 804, 3346 |
| BmgT120I | GGNCC | 6 cut(s) | 518, 1712, 2426, 2913, 3350, 4710 |
| BmiI | GGNNCC | 7 cut(s) | 10, 519, 1713, 2839, 3351, 3607, 3973 |
| BmrI | ACTGGG | 1 cut(s) | 563 |
| BmuI | ACTGGG | 1 cut(s) | 563 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3508 |
| BpiI | GAAGAC | 1 cut(s) | 2361 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 2 cut(s) | 399, 2066 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4191 |
| Bpu14I | TTCGAA | 2 cut(s) | 232, 4221 |
| BpuEI | CTTGAG | 6 cut(s) | 135, 345, 507, 2882, 3762, 4344 |
| BpuMI | CCSGG | 4 cut(s) | 805, 806, 2394, 2546 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2244, 3341, 3388 |
| BsaI | GGTCTC | 1 cut(s) | 2416 |
| BsaWI | WCCGGW | 2 cut(s) | 884, 3266 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 397, 427, 701, 731 |
| Bse118I | RCCGGY | 1 cut(s) | 1533 |
| Bse3DI | GCAATG | 4 cut(s) | 3202, 4166, 4545, 4698 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2244, 3341, 3388 |
| BseJI | GATNNNNATC | 3 cut(s) | 2244, 3341, 3388 |
| BseMI | GCAATG | 4 cut(s) | 3202, 4166, 4545, 4698 |
| BseRI | GAGGAG | 1 cut(s) | 4347 |
| BseSI | GKGCMC | 3 cut(s) | 3610, 3763, 4213 |
| BseXI | GCAGC | 9 cut(s) | 1567, 1595, 2794, 3536, 4075, 4124, 4234, 4494, 4564 |
| BseYI | CCCAGC | 2 cut(s) | 1708, 3015 |
| BsgI | GTGCAG | 4 cut(s) | 1058, 1325, 2467, 3543 |
| Bsh1236I | CGCG | 1 cut(s) | 2769 |
| BshNI | GGYRCC | 3 cut(s) | 8, 3605, 3971 |
| BsiHKCI | CYCGRG | 2 cut(s) | 804, 3346 |
| BsiSI | CCGG | 6 cut(s) | 805, 885, 1534, 2393, 2545, 3267 |
| BslFI | GGGAC | 3 cut(s) | 3516, 3886, 3924 |
| BsmAI | GTCTC | 6 cut(s) | 384, 417, 1915, 2416, 4017, 4374 |
| BsmBI | CGTCTC | 1 cut(s) | 417 |
| BsmFI | GGGAC | 3 cut(s) | 3516, 3886, 3924 |
| BsmI | GAATGC | 2 cut(s) | 1046, 1951 |
| Bso31I | GGTCTC | 1 cut(s) | 2416 |
| BsoBI | CYCGRG | 2 cut(s) | 804, 3346 |
| Bsp119I | TTCGAA | 2 cut(s) | 232, 4221 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3610, 3763, 4213 |
| Bsp1407I | TGTACA | 1 cut(s) | 2000 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4191 |
| BspACI | CCGC | 6 cut(s) | 1361, 1808, 2769, 3403, 4131, 4489 |
| BspFNI | CGCG | 1 cut(s) | 2769 |
| BspHI | TCATGA | 5 cut(s) | 448, 1108, 3145, 3211, 3409 |
| BspLI | GGNNCC | 7 cut(s) | 10, 519, 1713, 2839, 3351, 3607, 3973 |
| BspMAI | CTGCAG | 1 cut(s) | 1585 |
| BspMI | ACCTGC | 6 cut(s) | 361, 604, 1080, 1940, 2031, 3204 |
| BspPI | GGATC | 8 cut(s) | 1875, 2288, 2587, 2711, 2757, 2794, 3226, 3258 |
| BspQI | GCTCTTC | 2 cut(s) | 1056, 2827 |
| BspT104I | TTCGAA | 2 cut(s) | 232, 4221 |
| BspT107I | GGYRCC | 3 cut(s) | 8, 3605, 3971 |
| BspTNI | GGTCTC | 1 cut(s) | 2416 |
| BsrBI | CCGCTC | 1 cut(s) | 4491 |
| BsrDI | GCAATG | 4 cut(s) | 3202, 4166, 4545, 4698 |
| BsrFI | RCCGGY | 1 cut(s) | 1533 |
| BsrGI | TGTACA | 1 cut(s) | 2000 |
| BssAI | RCCGGY | 1 cut(s) | 1533 |
| BssT1I | CCWWGG | 2 cut(s) | 1443, 2266 |
| Bst6I | CTCTTC | 6 cut(s) | 450, 1056, 1913, 2827, 3429, 3747 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1766, 3196, 4333 |
| BstAUI | TGTACA | 1 cut(s) | 2000 |
| BstBI | TTCGAA | 2 cut(s) | 232, 4221 |
| BstC8I | GCNNGC | 7 cut(s) | 1535, 1697, 2235, 2879, 4148, 4338, 4582 |
| BstDSI | CCRYGG | 2 cut(s) | 3611, 4048 |
| BstEII | GGTNACC | 1 cut(s) | 808 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3966, 4359 |
| BstFNI | CGCG | 1 cut(s) | 2769 |
| BstHHI | GCGC | 1 cut(s) | 43 |
| BstMAI | GTCTC | 6 cut(s) | 384, 417, 1915, 2416, 4017, 4374 |
| BstNSI | RCATGY | 7 cut(s) | 431, 502, 1699, 1903, 2237, 2798, 4691 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3508 |
| BstPI | GGTNACC | 1 cut(s) | 808 |
| BstSFI | CTRYAG | 2 cut(s) | 1581, 1836 |
| BstSLI | GKGCMC | 3 cut(s) | 3610, 3763, 4213 |
| BstUI | CGCG | 1 cut(s) | 2769 |
| BstV1I | GCAGC | 9 cut(s) | 1567, 1595, 2794, 3536, 4075, 4124, 4234, 4494, 4564 |
| BstV2I | GAAGAC | 1 cut(s) | 2361 |
| BstX2I | RGATCY | 6 cut(s) | 194, 2579, 2786, 3231, 3263, 3342 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 754, 1088, 2315 |
| BstYI | RGATCY | 6 cut(s) | 194, 2579, 2786, 3231, 3263, 3342 |
| BsuI | GTATCC | 1 cut(s) | 1321 |
| BtgI | CCRYGG | 2 cut(s) | 3611, 4048 |
| BtgZI | GCGATG | 1 cut(s) | 2750 |
| BtsI | GCAGTG | 1 cut(s) | 3526 |
| BtsIMutI | CAGTG | 8 cut(s) | 551, 759, 939, 1744, 3360, 3459, 3526, 3706 |
| BveI | ACCTGC | 6 cut(s) | 361, 604, 1080, 1940, 2031, 3204 |
| Cac8I | GCNNGC | 7 cut(s) | 1535, 1697, 2235, 2879, 4148, 4338, 4582 |
| CaiI | CAGNNNCTG | 4 cut(s) | 422, 689, 1580, 1589 |
| CciI | TCATGA | 5 cut(s) | 448, 1108, 3145, 3211, 3409 |
| CfoI | GCGC | 1 cut(s) | 43 |
| Cfr10I | RCCGGY | 1 cut(s) | 1533 |
| Cfr13I | GGNCC | 6 cut(s) | 518, 1712, 2426, 2913, 3350, 4710 |
| Cfr9I | CCCGGG | 1 cut(s) | 804 |
| CsiI | ACCWGGT | 1 cut(s) | 1204 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4702, 4737 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3548 |
| EaeI | YGGCCR | 3 cut(s) | 3169, 3979, 4698 |
| Eam1104I | CTCTTC | 6 cut(s) | 450, 1056, 1913, 2827, 3429, 3747 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3548 |
| EarI | CTCTTC | 6 cut(s) | 450, 1056, 1913, 2827, 3429, 3747 |
| Eco130I | CCWWGG | 2 cut(s) | 1443, 2266 |
| Eco147I | AGGCCT | 1 cut(s) | 1408 |
| Eco31I | GGTCTC | 1 cut(s) | 2416 |
| Eco32I | GATATC | 1 cut(s) | 882 |
| Eco47I | GGWCC | 4 cut(s) | 518, 2913, 3350, 4710 |
| Eco57I | CTGAAG | 5 cut(s) | 644, 1773, 1830, 2637, 3453 |
| Eco88I | CYCGRG | 2 cut(s) | 804, 3346 |
| Eco91I | GGTNACC | 1 cut(s) | 808 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3966, 4359 |
| EcoO109I | RGGNCCY | 3 cut(s) | 518, 1712, 2913 |
| EcoO65I | GGTNACC | 1 cut(s) | 808 |
| EcoRI | GAATTC | 2 cut(s) | 4217, 4667 |
| EcoRV | GATATC | 1 cut(s) | 882 |
| EcoT14I | CCWWGG | 2 cut(s) | 1443, 2266 |
| EcoT22I | ATGCAT | 3 cut(s) | 1771, 3391, 4268 |
| ErhI | CCWWGG | 2 cut(s) | 1443, 2266 |
| Esp3I | CGTCTC | 1 cut(s) | 417 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 826, 858, 1211, 1243, 2566, 2598 |
| FaqI | GGGAC | 3 cut(s) | 3516, 3886, 3924 |
| FauI | CCCGC | 1 cut(s) | 1815 |
| FbaI | TGATCA | 3 cut(s) | 1111, 2062, 2182 |
| GlaI | GCGC | 1 cut(s) | 42 |
| GsaI | CCCAGC | 2 cut(s) | 1712, 3019 |
| GsuI | CTGGAG | 2 cut(s) | 399, 2066 |
| HapII | CCGG | 6 cut(s) | 805, 885, 1534, 2393, 2545, 3267 |
| HhaI | GCGC | 1 cut(s) | 43 |
| Hin6I | GCGC | 1 cut(s) | 41 |
| HinP1I | GCGC | 1 cut(s) | 41 |
| HincII | GTYRAC | 1 cut(s) | 769 |
| HindII | GTYRAC | 1 cut(s) | 769 |
| HindIII | AAGCTT | 6 cut(s) | 27, 482, 1225, 2005, 2858, 4193 |
| HpaII | CCGG | 6 cut(s) | 805, 885, 1534, 2393, 2545, 3267 |
| HphI | GGTGA | 7 cut(s) | 432, 617, 770, 1103, 1924, 2153, 4376 |
| Hpy166II | GTNNAC | 6 cut(s) | 769, 1513, 2001, 4294, 4301, 4675 |
| Hpy8I | GTNNAC | 6 cut(s) | 769, 1513, 2001, 4294, 4301, 4675 |
| Hpy99I | CGWCG | 1 cut(s) | 4064 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 2444 |
| HpySE526I | ACGT | 2 cut(s) | 270, 2444 |
| HspAI | GCGC | 1 cut(s) | 41 |
| KroI | GCCGGC | 1 cut(s) | 1533 |
| KroNI | GCCGGC | 1 cut(s) | 1535 |
| Ksp22I | TGATCA | 3 cut(s) | 1111, 2062, 2182 |
| LguI | GCTCTTC | 2 cut(s) | 1056, 2827 |
| LmnI | GCTCC | 5 cut(s) | 709, 1591, 3935, 4109, 4496 |
| Lsp1109I | GCAGC | 9 cut(s) | 1567, 1595, 2794, 3536, 4075, 4124, 4234, 4494, 4564 |
| MabI | ACCWGGT | 1 cut(s) | 1204 |
| MaeII | ACGT | 2 cut(s) | 270, 2444 |
| MbiI | CCGCTC | 1 cut(s) | 4491 |
| MfeI | CAATTG | 1 cut(s) | 1542 |
| MflI | RGATCY | 6 cut(s) | 194, 2579, 2786, 3231, 3263, 3342 |
| MhlI | GDGCHC | 3 cut(s) | 3610, 3763, 4213 |
| MlsI | TGGCCA | 2 cut(s) | 3171, 3981 |
| MluNI | TGGCCA | 2 cut(s) | 3171, 3981 |
| MlyI | GAGTC | 8 cut(s) | 386, 875, 884, 2636, 3269, 3385, 4156, 4376 |
| MmeI | TCCRAC | 2 cut(s) | 71, 771 |
| Mox20I | TGGCCA | 2 cut(s) | 3171, 3981 |
| Mph1103I | ATGCAT | 3 cut(s) | 1771, 3391, 4268 |
| MroNI | GCCGGC | 1 cut(s) | 1533 |
| MroXI | GAANNNNTTC | 4 cut(s) | 67, 942, 2520, 3807 |
| MscI | TGGCCA | 2 cut(s) | 3171, 3981 |
| MslI | CAYNNNNRTG | 6 cut(s) | 894, 975, 1051, 1821, 4271, 4608 |
| Msp20I | TGGCCA | 2 cut(s) | 3171, 3981 |
| MspA1I | CMGCKG | 2 cut(s) | 209, 4577 |
| MspI | CCGG | 6 cut(s) | 805, 885, 1534, 2393, 2545, 3267 |
| MunI | CAATTG | 1 cut(s) | 1542 |
| Mva1269I | GAATGC | 2 cut(s) | 1046, 1951 |
| MvnI | CGCG | 1 cut(s) | 2769 |
| NaeI | GCCGGC | 1 cut(s) | 1535 |
| NciI | CCSGG | 4 cut(s) | 805, 806, 2394, 2546 |
| NgoMIV | GCCGGC | 1 cut(s) | 1533 |
| NlaIV | GGNNCC | 7 cut(s) | 10, 519, 1713, 2839, 3351, 3607, 3973 |
| NmuCI | GTSAC | 7 cut(s) | 87, 438, 896, 1317, 1730, 3317, 4414 |
| NsiI | ATGCAT | 3 cut(s) | 1771, 3391, 4268 |
| NspI | RCATGY | 7 cut(s) | 431, 502, 1699, 1903, 2237, 2798, 4691 |
| NspV | TTCGAA | 2 cut(s) | 232, 4221 |
| PaeI | GCATGC | 2 cut(s) | 1699, 2237 |
| PagI | TCATGA | 5 cut(s) | 448, 1108, 3145, 3211, 3409 |
| PaqCI | CACCTGC | 1 cut(s) | 361 |
| PceI | AGGCCT | 1 cut(s) | 1408 |
| PciI | ACATGT | 1 cut(s) | 498 |
| PciSI | GCTCTTC | 2 cut(s) | 1056, 2827 |
| PctI | GAATGC | 2 cut(s) | 1046, 1951 |
| PdiI | GCCGGC | 1 cut(s) | 1535 |
| PdmI | GAANNNNTTC | 4 cut(s) | 67, 942, 2520, 3807 |
| PfeI | GAWTC | 8 cut(s) | 131, 234, 1352, 2888, 2985, 3095, 3625, 4498 |
| PflFI | GACNNNGTC | 1 cut(s) | 409 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 422, 2089 |
| PleI | GAGTC | 8 cut(s) | 385, 874, 883, 2635, 3269, 3384, 4156, 4375 |
| PpsI | GAGTC | 8 cut(s) | 385, 874, 883, 2635, 3269, 3384, 4156, 4375 |
| PpuMI | RGGWCCY | 2 cut(s) | 518, 2913 |
| PscI | ACATGT | 1 cut(s) | 498 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3508 |
| PsiI | TTATAA | 1 cut(s) | 671 |
| Psp5II | RGGWCCY | 2 cut(s) | 518, 2913 |
| PspEI | GGTNACC | 1 cut(s) | 808 |
| PspFI | CCCAGC | 2 cut(s) | 1708, 3015 |
| PspN4I | GGNNCC | 7 cut(s) | 10, 519, 1713, 2839, 3351, 3607, 3973 |
| PspPI | GGNCC | 6 cut(s) | 518, 1712, 2426, 2913, 3350, 4710 |
| PspPPI | RGGWCCY | 2 cut(s) | 518, 2913 |
| PstI | CTGCAG | 1 cut(s) | 1585 |
| PstNI | CAGNNNCTG | 4 cut(s) | 422, 689, 1580, 1589 |
| PsuI | RGATCY | 6 cut(s) | 194, 2579, 2786, 3231, 3263, 3342 |
| PsyI | GACNNNGTC | 1 cut(s) | 409 |
| PvuII | CAGCTG | 2 cut(s) | 209, 4577 |
| RseI | CAYNNNNRTG | 6 cut(s) | 894, 975, 1051, 1821, 4271, 4608 |
| SapI | GCTCTTC | 2 cut(s) | 1056, 2827 |
| Sau96I | GGNCC | 6 cut(s) | 518, 1712, 2426, 2913, 3350, 4710 |
| ScaI | AGTACT | 1 cut(s) | 3365 |
| SchI | GAGTC | 8 cut(s) | 386, 875, 884, 2636, 3269, 3385, 4156, 4376 |
| SduI | GDGCHC | 3 cut(s) | 3610, 3763, 4213 |
| SexAI | ACCWGGT | 1 cut(s) | 1204 |
| SfcI | CTRYAG | 2 cut(s) | 1581, 1836 |
| SfuI | TTCGAA | 2 cut(s) | 232, 4221 |
| SinI | GGWCC | 4 cut(s) | 518, 2913, 3350, 4710 |
| SmaI | CCCGGG | 1 cut(s) | 806 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 894, 975, 1051, 1821, 4271, 4608 |
| SmlI | CTYRAG | 6 cut(s) | 150, 360, 522, 2861, 3777, 4359 |
| SmoI | CTYRAG | 6 cut(s) | 150, 360, 522, 2861, 3777, 4359 |
| SpeI | ACTAGT | 2 cut(s) | 2636, 3314 |
| SphI | GCATGC | 2 cut(s) | 1699, 2237 |
| SseBI | AGGCCT | 1 cut(s) | 1408 |
| SsiI | CCGC | 6 cut(s) | 1361, 1808, 2769, 3403, 4131, 4489 |
| SspI | AATATT | 3 cut(s) | 2644, 2740, 3301 |
| StuI | AGGCCT | 1 cut(s) | 1408 |
| StyI | CCWWGG | 2 cut(s) | 1443, 2266 |
| TaiI | ACGT | 2 cut(s) | 273, 2447 |
| TaqI | TCGA | 6 cut(s) | 214, 232, 878, 4221, 4483, 4512 |
| TaqII | GACCGA | 1 cut(s) | 4698 |
| TatI | WGTACW | 5 cut(s) | 1100, 2000, 2311, 3363, 4184 |
| TauI | GCSGC | 1 cut(s) | 1364 |
| TfiI | GAWTC | 8 cut(s) | 131, 234, 1352, 2888, 2985, 3095, 3625, 4498 |
| TscAI | CASTG | 8 cut(s) | 558, 759, 939, 1744, 3360, 3459, 3526, 3706 |
| TseFI | GTSAC | 7 cut(s) | 87, 438, 896, 1317, 1730, 3317, 4414 |
| TseI | GCWGC | 9 cut(s) | 1580, 1583, 2807, 3524, 4088, 4112, 4247, 4507, 4577 |
| Tsp45I | GTSAC | 7 cut(s) | 87, 438, 896, 1317, 1730, 3317, 4414 |
| TspGWI | ACGGA | 1 cut(s) | 2455 |
| TspMI | CCCGGG | 1 cut(s) | 804 |
| TspRI | CASTG | 8 cut(s) | 558, 759, 939, 1744, 3360, 3459, 3526, 3706 |
| Tth111I | GACNNNGTC | 1 cut(s) | 409 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 422, 2089 |
| VpaK11BI | GGWCC | 4 cut(s) | 518, 2913, 3350, 4710 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3966, 4359 |
| XceI | RCATGY | 7 cut(s) | 431, 502, 1699, 1903, 2237, 2798, 4691 |
| XmaI | CCCGGG | 1 cut(s) | 804 |
| XmnI | GAANNNNTTC | 4 cut(s) | 67, 942, 2520, 3807 |
| ZrmI | AGTACT | 1 cut(s) | 3365 |
| Zsp2I | ATGCAT | 3 cut(s) | 1771, 3391, 4268 |