CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08084 FvH4_4g17693 |
| malus_domestica | MD13G1170600.v1.1 MD16G1172200.v1.1 |
| prunus_persica | Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 |
| pyrus_communis | pycom13g14620 pycom16g14450 |
| rosa_chinensis | RchiOBHm_Chr4g0421671 |
| rosa_laevigata | RLG00000007660 |
| rosa_multiflora | Rmu_sc0004533.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00363910 |
| rosa_rugosa | Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500 |
| rosa_samantha | Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600 |
| rosa_wichuraiana | Rw0G007710 Rw4G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2262 |
| Acc36I | ACCTGC | 3 cut(s) | 1705, 2125, 2262 |
| AccB1I | GGYRCC | 1 cut(s) | 3471 |
| AccBSI | CCGCTC | 4 cut(s) | 1557, 1758, 2957, 4686 |
| AccII | CGCG | 1 cut(s) | 4781 |
| AclWI | GGATC | 7 cut(s) | 3108, 3121, 3536, 3537, 3641, 4581, 4899 |
| AcoI | YGGCCR | 1 cut(s) | 2958 |
| AcsI | RAATTY | 9 cut(s) | 111, 157, 424, 2524, 2688, 2809, 3091, 4726, 4910 |
| AcuI | CTGAAG | 6 cut(s) | 539, 1116, 2046, 2646, 3249, 3435 |
| AcvI | CACGTG | 2 cut(s) | 1397, 2588 |
| AdeI | CACNNNGTG | 1 cut(s) | 3765 |
| AfaI | GTAC | 8 cut(s) | 1390, 1848, 2115, 2566, 2917, 4430, 4435, 4564 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 79, 716, 2692, 4061 |
| AflII | CTTAAG | 1 cut(s) | 4292 |
| AjnI | CCWGG | 9 cut(s) | 400, 715, 902, 1515, 1987, 2420, 2580, 2882, 3363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1426, 1458 |
| Alw21I | GWGCWC | 3 cut(s) | 1020, 3925, 4866 |
| Alw44I | GTGCAC | 1 cut(s) | 3921 |
| AlwI | GGATC | 7 cut(s) | 3108, 3121, 3536, 3537, 3641, 4581, 4899 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 316, 989, 1783, 1856, 1865, 2108, 2117, 4067 |
| AoxI | GGCC | 7 cut(s) | 127, 811, 1430, 2958, 4260, 4506, 4893 |
| ApaLI | GTGCAC | 1 cut(s) | 3921 |
| ApoI | RAATTY | 9 cut(s) | 111, 157, 424, 2524, 2688, 2809, 3091, 4726, 4910 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3106 |
| AspLEI | GCGC | 2 cut(s) | 4207, 4781 |
| AspS9I | GGNCC | 5 cut(s) | 127, 394, 811, 2880, 3240 |
| AsuC2I | CCSGG | 2 cut(s) | 80, 3118 |
| AsuII | TTCGAA | 1 cut(s) | 526 |
| AvaII | GGWCC | 3 cut(s) | 394, 2880, 3240 |
| AxyI | CCTNAGG | 2 cut(s) | 624, 1927 |
| BaeGI | GKGCMC | 2 cut(s) | 3925, 4465 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4095, 4128 |
| BamHI | GGATCC | 1 cut(s) | 3113 |
| BanI | GGYRCC | 1 cut(s) | 3471 |
| BanII | GRGCYC | 2 cut(s) | 3908, 4866 |
| BbrPI | CACGTG | 2 cut(s) | 1397, 2588 |
| BbsI | GAAGAC | 2 cut(s) | 1008, 3258 |
| Bbv12I | GWGCWC | 3 cut(s) | 1020, 3925, 4866 |
| BceAI | ACGGC | 2 cut(s) | 567, 4349 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2335, 2369, 4442, 4476 |
| BciT130I | CCWGG | 9 cut(s) | 402, 717, 904, 1517, 1989, 2422, 2582, 2884, 3365 |
| BciVI | GTATCC | 2 cut(s) | 1345, 2773 |
| BclI | TGATCA | 4 cut(s) | 505, 2140, 2455, 4186 |
| BcnI | CCSGG | 2 cut(s) | 80, 3118 |
| BfaI | CTAG | 8 cut(s) | 1104, 1221, 1494, 2331, 3177, 4560, 4689, 4923 |
| BfmI | CTRYAG | 3 cut(s) | 1857, 2109, 4437 |
| BfrI | CTTAAG | 1 cut(s) | 4292 |
| BfuAI | ACCTGC | 3 cut(s) | 1705, 2125, 2262 |
| BfuI | GTATCC | 2 cut(s) | 1345, 2773 |
| BglII | AGATCT | 1 cut(s) | 278 |
| BmcAI | AGTACT | 3 cut(s) | 2566, 2917, 4435 |
| Bme18I | GGWCC | 3 cut(s) | 394, 2880, 3240 |
| BmgT120I | GGNCC | 5 cut(s) | 127, 394, 811, 2880, 3240 |
| BmrI | ACTGGG | 1 cut(s) | 999 |
| BmuI | ACTGGG | 1 cut(s) | 999 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2616, 3823 |
| BpiI | GAAGAC | 2 cut(s) | 1008, 3258 |
| BpmI | CTGGAG | 4 cut(s) | 423, 738, 1538, 3558 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2385 |
| Bpu14I | TTCGAA | 1 cut(s) | 526 |
| BpuEI | CTTGAG | 7 cut(s) | 429, 639, 956, 2743, 3761, 4596, 4729 |
| BpuMI | CCSGG | 2 cut(s) | 80, 3118 |
| BsaAI | YACGTR | 2 cut(s) | 1397, 2588 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3685 |
| BsaI | GGTCTC | 2 cut(s) | 228, 2701 |
| BsaJI | CCNNGG | 9 cut(s) | 400, 1988, 2421, 2580, 2646, 2838, 4012, 4357, 4503 |
| BsaWI | WCCGGW | 1 cut(s) | 919 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2864, 2894, 3531, 3561 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 79, 716, 2692, 4061 |
| Bse21I | CCTNAGG | 2 cut(s) | 624, 1927 |
| Bse3DI | GCAATG | 5 cut(s) | 645, 2699, 4006, 4740, 4893 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3685 |
| BseBI | CCWGG | 9 cut(s) | 402, 717, 904, 1517, 1989, 2422, 2582, 2884, 3365 |
| BseDI | CCNNGG | 9 cut(s) | 400, 1988, 2421, 2580, 2646, 2838, 4012, 4357, 4503 |
| BseJI | GATNNNNATC | 1 cut(s) | 3685 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 79, 716, 2692, 4061 |
| BseMI | GCAATG | 5 cut(s) | 645, 2699, 4006, 4740, 4893 |
| BseRI | GAGGAG | 6 cut(s) | 2030, 2462, 2508, 4216, 4599, 4874 |
| BseSI | GKGCMC | 2 cut(s) | 3925, 4465 |
| BseYI | CCCAGC | 2 cut(s) | 152, 4145 |
| Bsh1236I | CGCG | 1 cut(s) | 4781 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3469 |
| BshFI | GGCC | 7 cut(s) | 129, 813, 1432, 2960, 4262, 4508, 4895 |
| BshNI | GGYRCC | 1 cut(s) | 3471 |
| BsiEI | CGRYCG | 1 cut(s) | 3469 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1020, 3925, 4866 |
| BsiSI | CCGG | 4 cut(s) | 80, 920, 1940, 3117 |
| BslFI | GGGAC | 2 cut(s) | 1664, 4162 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 79, 716, 2692, 4061 |
| BsmFI | GGGAC | 2 cut(s) | 1664, 4162 |
| BsmI | GAATGC | 4 cut(s) | 124, 823, 3067, 4765 |
| BsnI | GGCC | 7 cut(s) | 129, 813, 1432, 2960, 4262, 4508, 4895 |
| Bso31I | GGTCTC | 2 cut(s) | 228, 2701 |
| Bsp119I | TTCGAA | 1 cut(s) | 526 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1020, 3908, 3925, 4465, 4866 |
| Bsp1407I | TGTACA | 1 cut(s) | 4428 |
| BspANI | GGCC | 7 cut(s) | 129, 813, 1432, 2960, 4262, 4508, 4895 |
| BspFNI | CGCG | 1 cut(s) | 4781 |
| BspHI | TCATGA | 3 cut(s) | 135, 742, 3505 |
| BspMAI | CTGCAG | 2 cut(s) | 1861, 2113 |
| BspMI | ACCTGC | 3 cut(s) | 1705, 2125, 2262 |
| BspPI | GGATC | 7 cut(s) | 3108, 3121, 3536, 3537, 3641, 4581, 4899 |
| BspQI | GCTCTTC | 3 cut(s) | 1158, 1344, 3154 |
| BspT104I | TTCGAA | 1 cut(s) | 526 |
| BspT107I | GGYRCC | 1 cut(s) | 3471 |
| BspTI | CTTAAG | 1 cut(s) | 4292 |
| BspTNI | GGTCTC | 2 cut(s) | 228, 2701 |
| BsrBI | CCGCTC | 4 cut(s) | 1557, 1758, 2957, 4686 |
| BsrDI | GCAATG | 5 cut(s) | 645, 2699, 4006, 4740, 4893 |
| BsrGI | TGTACA | 1 cut(s) | 4428 |
| BssECI | CCNNGG | 9 cut(s) | 400, 1988, 2421, 2580, 2646, 2838, 4012, 4357, 4503 |
| BssT1I | CCWWGG | 4 cut(s) | 2646, 2838, 4357, 4503 |
| Bst2UI | CCWGG | 9 cut(s) | 402, 717, 904, 1517, 1989, 2422, 2582, 2884, 3365 |
| Bst4CI | ACNGT | 7 cut(s) | 749, 1785, 3467, 3836, 4111, 4433, 4550 |
| Bst6I | CTCTTC | 5 cut(s) | 1158, 1344, 2483, 2870, 3154 |
| BstAFI | CTTAAG | 1 cut(s) | 4292 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1360, 2117, 4585 |
| BstAUI | TGTACA | 1 cut(s) | 4428 |
| BstBAI | YACGTR | 2 cut(s) | 1397, 2588 |
| BstBI | TTCGAA | 1 cut(s) | 526 |
| BstC8I | GCNNGC | 9 cut(s) | 434, 1973, 2351, 2508, 4143, 4181, 4590, 4777, 4884 |
| BstEII | GGTNACC | 1 cut(s) | 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4059 |
| BstFNI | CGCG | 1 cut(s) | 4781 |
| BstHHI | GCGC | 2 cut(s) | 4207, 4781 |
| BstMCI | CGRYCG | 1 cut(s) | 3469 |
| BstNI | CCWGG | 9 cut(s) | 402, 717, 904, 1517, 1989, 2422, 2582, 2884, 3365 |
| BstNSI | RCATGY | 4 cut(s) | 1731, 1975, 2510, 3125 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2616, 3823 |
| BstPI | GGTNACC | 1 cut(s) | 302 |
| BstSFI | CTRYAG | 3 cut(s) | 1857, 2109, 4437 |
| BstSLI | GKGCMC | 2 cut(s) | 3925, 4465 |
| BstUI | CGCG | 1 cut(s) | 4781 |
| BstV2I | GAAGAC | 2 cut(s) | 1008, 3258 |
| BstX2I | RGATCY | 3 cut(s) | 278, 3113, 3541 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2588 |
| BstYI | RGATCY | 3 cut(s) | 278, 3113, 3541 |
| Bsu36I | CCTNAGG | 2 cut(s) | 624, 1927 |
| BsuI | GTATCC | 2 cut(s) | 1345, 2773 |
| BsuRI | GGCC | 7 cut(s) | 129, 813, 1432, 2960, 4262, 4508, 4895 |
| BtsI | GCAGTG | 2 cut(s) | 366, 3923 |
| BveI | ACCTGC | 3 cut(s) | 1705, 2125, 2262 |
| Cac8I | GCNNGC | 9 cut(s) | 434, 1973, 2351, 2508, 4143, 4181, 4590, 4777, 4884 |
| CaiI | CAGNNNCTG | 8 cut(s) | 316, 989, 1783, 1856, 1865, 2108, 2117, 4067 |
| CciI | TCATGA | 3 cut(s) | 135, 742, 3505 |
| CfoI | GCGC | 2 cut(s) | 4207, 4781 |
| Cfr13I | GGNCC | 5 cut(s) | 127, 394, 811, 2880, 3240 |
| Csp6I | GTAC | 8 cut(s) | 1389, 1847, 2114, 2565, 2916, 4429, 4434, 4563 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4897, 4932 |
| CviQI | GTAC | 8 cut(s) | 1389, 1847, 2114, 2565, 2916, 4429, 4434, 4563 |
| DraI | TTTAAA | 1 cut(s) | 2196 |
| DraIII | CACNNNGTG | 1 cut(s) | 3765 |
| EaeI | YGGCCR | 1 cut(s) | 2958 |
| Eam1104I | CTCTTC | 5 cut(s) | 1158, 1344, 2483, 2870, 3154 |
| EarI | CTCTTC | 5 cut(s) | 1158, 1344, 2483, 2870, 3154 |
| Ecl136II | GAGCTC | 1 cut(s) | 4864 |
| Eco130I | CCWWGG | 4 cut(s) | 2646, 2838, 4357, 4503 |
| Eco24I | GRGCYC | 2 cut(s) | 3908, 4866 |
| Eco31I | GGTCTC | 2 cut(s) | 228, 2701 |
| Eco32I | GATATC | 3 cut(s) | 732, 1182, 2864 |
| Eco47I | GGWCC | 3 cut(s) | 394, 2880, 3240 |
| Eco53kI | GAGCTC | 1 cut(s) | 4864 |
| Eco57I | CTGAAG | 6 cut(s) | 539, 1116, 2046, 2646, 3249, 3435 |
| Eco72I | CACGTG | 2 cut(s) | 1397, 2588 |
| Eco81I | CCTNAGG | 2 cut(s) | 624, 1927 |
| Eco91I | GGTNACC | 1 cut(s) | 302 |
| EcoICRI | GAGCTC | 1 cut(s) | 4864 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4059 |
| EcoO109I | RGGNCCY | 2 cut(s) | 394, 3240 |
| EcoO65I | GGTNACC | 1 cut(s) | 302 |
| EcoRI | GAATTC | 2 cut(s) | 111, 157 |
| EcoRII | CCWGG | 9 cut(s) | 400, 715, 902, 1515, 1987, 2420, 2580, 2882, 3363 |
| EcoRV | GATATC | 3 cut(s) | 732, 1182, 2864 |
| EcoT14I | CCWWGG | 4 cut(s) | 2646, 2838, 4357, 4503 |
| EcoT22I | ATGCAT | 4 cut(s) | 727, 3067, 3877, 4520 |
| EcoT38I | GRGCYC | 2 cut(s) | 3908, 4866 |
| ErhI | CCWWGG | 4 cut(s) | 2646, 2838, 4357, 4503 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3243, 3275, 3595, 3627 |
| FaqI | GGGAC | 2 cut(s) | 1664, 4162 |
| FauI | CCCGC | 1 cut(s) | 261 |
| FbaI | TGATCA | 4 cut(s) | 505, 2140, 2455, 4186 |
| FriOI | GRGCYC | 2 cut(s) | 3908, 4866 |
| FspBI | CTAG | 8 cut(s) | 1104, 1221, 1494, 2331, 3177, 4560, 4689, 4923 |
| GlaI | GCGC | 2 cut(s) | 4206, 4780 |
| GsaI | CCCAGC | 2 cut(s) | 156, 4149 |
| GsuI | CTGGAG | 4 cut(s) | 423, 738, 1538, 3558 |
| HaeIII | GGCC | 7 cut(s) | 129, 813, 1432, 2960, 4262, 4508, 4895 |
| HapII | CCGG | 4 cut(s) | 80, 920, 1940, 3117 |
| HhaI | GCGC | 2 cut(s) | 4207, 4781 |
| Hin6I | GCGC | 2 cut(s) | 4205, 4779 |
| HinP1I | GCGC | 2 cut(s) | 4205, 4779 |
| HincII | GTYRAC | 2 cut(s) | 2536, 3184 |
| HindII | GTYRAC | 2 cut(s) | 2536, 3184 |
| HindIII | AAGCTT | 5 cut(s) | 321, 776, 932, 1098, 4880 |
| HpaI | GTTAAC | 1 cut(s) | 3184 |
| HpaII | CCGG | 4 cut(s) | 80, 920, 1940, 3117 |
| Hpy166II | GTNNAC | 8 cut(s) | 1400, 2536, 3184, 3386, 3923, 4429, 4546, 4553 |
| Hpy8I | GTNNAC | 8 cut(s) | 1400, 2536, 3184, 3386, 3923, 4429, 4546, 4553 |
| HpyCH4III | ACNGT | 7 cut(s) | 749, 1785, 3467, 3836, 4111, 4433, 4550 |
| HpyCH4IV | ACGT | 4 cut(s) | 1396, 2587, 4130, 4418 |
| HpySE526I | ACGT | 4 cut(s) | 1396, 2587, 4130, 4418 |
| HspAI | GCGC | 2 cut(s) | 4205, 4779 |
| Ksp22I | TGATCA | 4 cut(s) | 505, 2140, 2455, 4186 |
| KspAI | GTTAAC | 1 cut(s) | 3184 |
| LguI | GCTCTTC | 3 cut(s) | 1158, 1344, 3154 |
| MaeI | CTAG | 8 cut(s) | 1104, 1221, 1494, 2331, 3177, 4560, 4689, 4923 |
| MaeII | ACGT | 4 cut(s) | 1396, 2587, 4130, 4418 |
| MaeIII | GTNAC | 9 cut(s) | 302, 378, 1488, 1779, 2003, 3394, 3830, 4131, 4679 |
| MbiI | CCGCTC | 4 cut(s) | 1557, 1758, 2957, 4686 |
| MfeI | CAATTG | 2 cut(s) | 374, 3995 |
| MflI | RGATCY | 3 cut(s) | 278, 3113, 3541 |
| MhlI | GDGCHC | 5 cut(s) | 1020, 3908, 3925, 4465, 4866 |
| MlyI | GAGTC | 6 cut(s) | 839, 1647, 2080, 2918, 3983, 4628 |
| MmeI | TCCRAC | 2 cut(s) | 464, 524 |
| Mph1103I | ATGCAT | 4 cut(s) | 727, 3067, 3877, 4520 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3106 |
| MslI | CAYNNNNRTG | 9 cut(s) | 2094, 2543, 3504, 3510, 3954, 4470, 4523, 4538, 4803 |
| MspA1I | CMGCKG | 1 cut(s) | 1853 |
| MspCI | CTTAAG | 1 cut(s) | 4292 |
| MspI | CCGG | 4 cut(s) | 80, 920, 1940, 3117 |
| MunI | CAATTG | 2 cut(s) | 374, 3995 |
| Mva1269I | GAATGC | 4 cut(s) | 124, 823, 3067, 4765 |
| MvaI | CCWGG | 9 cut(s) | 402, 717, 904, 1517, 1989, 2422, 2582, 2884, 3365 |
| MvnI | CGCG | 1 cut(s) | 4781 |
| NciI | CCSGG | 2 cut(s) | 80, 3118 |
| NmeAIII | GCCGAG | 2 cut(s) | 1022, 4037 |
| NmuCI | GTSAC | 7 cut(s) | 302, 378, 1488, 2003, 3394, 3830, 4131 |
| NsiI | ATGCAT | 4 cut(s) | 727, 3067, 3877, 4520 |
| NspI | RCATGY | 4 cut(s) | 1731, 1975, 2510, 3125 |
| NspV | TTCGAA | 1 cut(s) | 526 |
| PaeI | GCATGC | 2 cut(s) | 1975, 2510 |
| PagI | TCATGA | 3 cut(s) | 135, 742, 3505 |
| PaqCI | CACCTGC | 1 cut(s) | 2262 |
| PciSI | GCTCTTC | 3 cut(s) | 1158, 1344, 3154 |
| PctI | GAATGC | 4 cut(s) | 124, 823, 3067, 4765 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3106 |
| PflFI | GACNNNGTC | 1 cut(s) | 4129 |
| PfoI | TCCNGGA | 3 cut(s) | 715, 902, 2882 |
| PleI | GAGTC | 6 cut(s) | 839, 1646, 2080, 2917, 3982, 4627 |
| PmaCI | CACGTG | 2 cut(s) | 1397, 2588 |
| PmlI | CACGTG | 2 cut(s) | 1397, 2588 |
| PpsI | GAGTC | 6 cut(s) | 839, 1646, 2080, 2917, 3982, 4627 |
| Ppu21I | YACGTR | 2 cut(s) | 1397, 2588 |
| PpuMI | RGGWCCY | 2 cut(s) | 394, 3240 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2616, 3823 |
| Psp124BI | GAGCTC | 1 cut(s) | 4866 |
| Psp5II | RGGWCCY | 2 cut(s) | 394, 3240 |
| Psp6I | CCWGG | 9 cut(s) | 400, 715, 902, 1515, 1987, 2420, 2580, 2882, 3363 |
| PspCI | CACGTG | 2 cut(s) | 1397, 2588 |
| PspEI | GGTNACC | 1 cut(s) | 302 |
| PspFI | CCCAGC | 2 cut(s) | 152, 4145 |
| PspGI | CCWGG | 9 cut(s) | 400, 715, 902, 1515, 1987, 2420, 2580, 2882, 3363 |
| PspPI | GGNCC | 5 cut(s) | 127, 394, 811, 2880, 3240 |
| PspPPI | RGGWCCY | 2 cut(s) | 394, 3240 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2728, 2760 |
| PstI | CTGCAG | 2 cut(s) | 1861, 2113 |
| PstNI | CAGNNNCTG | 8 cut(s) | 316, 989, 1783, 1856, 1865, 2108, 2117, 4067 |
| PsuI | RGATCY | 3 cut(s) | 278, 3113, 3541 |
| PsyI | GACNNNGTC | 1 cut(s) | 4129 |
| RsaI | GTAC | 8 cut(s) | 1390, 1848, 2115, 2566, 2917, 4430, 4435, 4564 |
| RsaNI | GTAC | 8 cut(s) | 1389, 1847, 2114, 2565, 2916, 4429, 4434, 4563 |
| RseI | CAYNNNNRTG | 9 cut(s) | 2094, 2543, 3504, 3510, 3954, 4470, 4523, 4538, 4803 |
| SacI | GAGCTC | 1 cut(s) | 4866 |
| SapI | GCTCTTC | 3 cut(s) | 1158, 1344, 3154 |
| Sau96I | GGNCC | 5 cut(s) | 127, 394, 811, 2880, 3240 |
| ScaI | AGTACT | 3 cut(s) | 2566, 2917, 4435 |
| SchI | GAGTC | 6 cut(s) | 839, 1647, 2080, 2918, 3983, 4628 |
| SduI | GDGCHC | 5 cut(s) | 1020, 3908, 3925, 4465, 4866 |
| SfcI | CTRYAG | 3 cut(s) | 1857, 2109, 4437 |
| SfuI | TTCGAA | 1 cut(s) | 526 |
| SinI | GGWCC | 3 cut(s) | 394, 2880, 3240 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 2094, 2543, 3504, 3510, 3954, 4470, 4523, 4538, 4803 |
| SmlI | CTYRAG | 8 cut(s) | 444, 654, 935, 2722, 3776, 4292, 4611, 4744 |
| SmoI | CTYRAG | 8 cut(s) | 444, 654, 935, 2722, 3776, 4292, 4611, 4744 |
| SphI | GCATGC | 2 cut(s) | 1975, 2510 |
| SspI | AATATT | 1 cut(s) | 2965 |
| SspMI | CTAG | 8 cut(s) | 1104, 1221, 1494, 2331, 3177, 4560, 4689, 4923 |
| SstI | GAGCTC | 1 cut(s) | 4866 |
| StyI | CCWWGG | 4 cut(s) | 2646, 2838, 4357, 4503 |
| TaaI | ACNGT | 7 cut(s) | 749, 1785, 3467, 3836, 4111, 4433, 4550 |
| TaiI | ACGT | 4 cut(s) | 1399, 2590, 4133, 4421 |
| TaqI | TCGA | 7 cut(s) | 526, 878, 1601, 2338, 3665, 4101, 4903 |
| TatI | WGTACW | 5 cut(s) | 2564, 2915, 4428, 4433, 4562 |
| TauI | GCSGC | 5 cut(s) | 1761, 1856, 1918, 2960, 4482 |
| TseFI | GTSAC | 7 cut(s) | 302, 378, 1488, 2003, 3394, 3830, 4131 |
| Tsp45I | GTSAC | 7 cut(s) | 302, 378, 1488, 2003, 3394, 3830, 4131 |
| TspGWI | ACGGA | 1 cut(s) | 436 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4129 |
| Vha464I | CTTAAG | 1 cut(s) | 4292 |
| VneI | GTGCAC | 1 cut(s) | 3921 |
| VpaK11BI | GGWCC | 3 cut(s) | 394, 2880, 3240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4059 |
| XapI | RAATTY | 9 cut(s) | 111, 157, 424, 2524, 2688, 2809, 3091, 4726, 4910 |
| XceI | RCATGY | 4 cut(s) | 1731, 1975, 2510, 3125 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1749, 3437 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3106 |
| XspI | CTAG | 8 cut(s) | 1104, 1221, 1494, 2331, 3177, 4560, 4689, 4923 |
| ZrmI | AGTACT | 3 cut(s) | 2566, 2917, 4435 |
| Zsp2I | ATGCAT | 4 cut(s) | 727, 3067, 3877, 4520 |