CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08084 FvH4_4g17693 |
| malus_domestica | MD13G1170600.v1.1 MD16G1172200.v1.1 |
| prunus_persica | Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 |
| pyrus_communis | pycom13g14620 pycom16g14450 |
| rosa_chinensis | RchiOBHm_Chr4g0421671 |
| rosa_laevigata | RLG00000007660 |
| rosa_multiflora | Rmu_sc0004533.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00363910 |
| rosa_rugosa | Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500 |
| rosa_samantha | Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600 |
| rosa_wichuraiana | Rw0G007710 Rw4G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2196 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1042 |
| Acc36I | ACCTGC | 5 cut(s) | 1302, 1639, 1792, 2138, 2196 |
| AccB1I | GGYRCC | 4 cut(s) | 302, 2918, 3947, 5030 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4720 |
| AccBSI | CCGCTC | 1 cut(s) | 4797 |
| AccI | GTMKAC | 1 cut(s) | 1269 |
| AclWI | GGATC | 5 cut(s) | 1623, 3048, 3061, 3668, 5010 |
| AcuI | CTGAAG | 8 cut(s) | 539, 950, 1116, 1980, 2577, 2852, 3189, 4418 |
| AcvI | CACGTG | 1 cut(s) | 2519 |
| AcyI | GRCGYC | 2 cut(s) | 2529, 3948 |
| AdeI | CACNNNGTG | 1 cut(s) | 3792 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 79, 219, 716, 1710, 2147, 2423, 2632, 4720 |
| AflII | CTTAAG | 1 cut(s) | 4343 |
| AjiI | CACGTC | 1 cut(s) | 2662 |
| AjnI | CCWGG | 6 cut(s) | 400, 902, 1103, 2511, 2822, 3390 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3398, 3430 |
| Alw21I | GWGCWC | 1 cut(s) | 1779 |
| Alw26I | GTCTC | 9 cut(s) | 161, 243, 1579, 2168, 2641, 2732, 4320, 4452, 4677 |
| AlwI | GGATC | 5 cut(s) | 1623, 3048, 3061, 3668, 5010 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 316, 989, 1799, 2042, 3964, 4094 |
| Ama87I | CYCGRG | 1 cut(s) | 1922 |
| AoxI | GGCC | 6 cut(s) | 127, 1110, 3931, 4282, 4557, 5004 |
| ApaI | GGGCCC | 1 cut(s) | 3935 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4110 |
| AspLEI | GCGC | 2 cut(s) | 3950, 4258 |
| AspS9I | GGNCC | 7 cut(s) | 127, 249, 394, 1322, 3180, 3931, 3932 |
| AsuC2I | CCSGG | 4 cut(s) | 80, 1923, 1924, 3058 |
| AsuHPI | GGTGA | 9 cut(s) | 726, 731, 923, 1138, 2804, 3138, 3422, 4157, 4679 |
| AsuII | TTCGAA | 1 cut(s) | 526 |
| AvaI | CYCGRG | 1 cut(s) | 1922 |
| AvaII | GGWCC | 4 cut(s) | 249, 394, 1322, 3180 |
| AxyI | CCTNAGG | 2 cut(s) | 624, 4279 |
| BaeGI | GKGCMC | 4 cut(s) | 307, 1020, 3935, 4516 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4122, 4155 |
| BamHI | GGATCC | 1 cut(s) | 3053 |
| BanI | GGYRCC | 4 cut(s) | 302, 2918, 3947, 5030 |
| BanII | GRGCYC | 2 cut(s) | 1779, 3935 |
| BbrPI | CACGTG | 1 cut(s) | 2519 |
| BbsI | GAAGAC | 4 cut(s) | 216, 1008, 2565, 4674 |
| Bbv12I | GWGCWC | 1 cut(s) | 1779 |
| BbvCI | CCTCAGC | 1 cut(s) | 453 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4493, 4527 |
| BciT130I | CCWGG | 6 cut(s) | 402, 904, 1105, 2513, 2824, 3392 |
| BciVI | GTATCC | 1 cut(s) | 910 |
| BclI | TGATCA | 4 cut(s) | 505, 2074, 2386, 4228 |
| BcnI | CCSGG | 4 cut(s) | 80, 1923, 1924, 3058 |
| BcoDI | GTCTC | 9 cut(s) | 161, 243, 1579, 2168, 2641, 2732, 4320, 4452, 4677 |
| BfaI | CTAG | 8 cut(s) | 1619, 2265, 2676, 2853, 2859, 3117, 4611, 4664 |
| BfmI | CTRYAG | 7 cut(s) | 837, 1785, 1791, 2015, 2043, 3150, 4488 |
| BfoI | RGCGCY | 1 cut(s) | 3951 |
| BfrI | CTTAAG | 1 cut(s) | 4343 |
| BfuAI | ACCTGC | 5 cut(s) | 1302, 1639, 1792, 2138, 2196 |
| BfuI | GTATCC | 1 cut(s) | 910 |
| BglII | AGATCT | 1 cut(s) | 278 |
| BlpI | GCTNAGC | 1 cut(s) | 760 |
| BmcAI | AGTACT | 3 cut(s) | 2049, 2857, 4486 |
| Bme18I | GGWCC | 4 cut(s) | 249, 394, 1322, 3180 |
| BmeT110I | CYCGRG | 1 cut(s) | 1922 |
| BmgBI | CACGTC | 1 cut(s) | 2662 |
| BmgT120I | GGNCC | 7 cut(s) | 127, 249, 394, 1322, 3180, 3931, 3932 |
| BmrI | ACTGGG | 1 cut(s) | 4907 |
| BmuI | ACTGGG | 1 cut(s) | 4907 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2547, 3850 |
| BpiI | GAAGAC | 4 cut(s) | 216, 1008, 2565, 4674 |
| BpmI | CTGGAG | 2 cut(s) | 423, 3585 |
| Bpu10I | CCTNAGC | 2 cut(s) | 453, 2319 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 760 |
| Bpu14I | TTCGAA | 1 cut(s) | 526 |
| BpuEI | CTTGAG | 3 cut(s) | 639, 956, 4840 |
| BpuMI | CCSGG | 4 cut(s) | 80, 1923, 1924, 3058 |
| BsaAI | YACGTR | 2 cut(s) | 1845, 2519 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2079 |
| BsaHI | GRCGYC | 2 cut(s) | 2529, 3948 |
| BsaI | GGTCTC | 2 cut(s) | 2168, 2641 |
| BsaJI | CCNNGG | 9 cut(s) | 245, 400, 1104, 1922, 2355, 2511, 2778, 4408, 4554 |
| BsaWI | WCCGGW | 1 cut(s) | 919 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1648, 1678, 2804, 2834, 3558, 3588 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 79, 219, 716, 1710, 2147, 2423, 2632, 4720 |
| Bse1I | ACTGG | 7 cut(s) | 794, 1199, 1770, 3304, 3677, 4124, 4902 |
| Bse21I | CCTNAGG | 2 cut(s) | 624, 4279 |
| Bse3DI | GCAATG | 5 cut(s) | 1312, 2869, 4033, 4851, 5004 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2079 |
| BseBI | CCWGG | 6 cut(s) | 402, 904, 1105, 2513, 2824, 3392 |
| BseDI | CCNNGG | 9 cut(s) | 245, 400, 1104, 1922, 2355, 2511, 2778, 4408, 4554 |
| BseJI | GATNNNNATC | 1 cut(s) | 2079 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 79, 219, 716, 1710, 2147, 2423, 2632, 4720 |
| BseMI | GCAATG | 5 cut(s) | 1312, 2869, 4033, 4851, 5004 |
| BseNI | ACTGG | 7 cut(s) | 794, 1199, 1770, 3304, 3677, 4124, 4902 |
| BseRI | GAGGAG | 5 cut(s) | 896, 2439, 4267, 4650, 4985 |
| BseSI | GKGCMC | 4 cut(s) | 307, 1020, 3935, 4516 |
| BseYI | CCCAGC | 3 cut(s) | 989, 3282, 4172 |
| BshFI | GGCC | 6 cut(s) | 129, 1112, 3933, 4284, 4559, 5006 |
| BshNI | GGYRCC | 4 cut(s) | 302, 2918, 3947, 5030 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1779 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1922 |
| BsiSI | CCGG | 5 cut(s) | 80, 920, 1874, 1923, 3057 |
| BslFI | GGGAC | 2 cut(s) | 3334, 4189 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 79, 219, 716, 1710, 2147, 2423, 2632, 4720 |
| BsmAI | GTCTC | 9 cut(s) | 161, 243, 1579, 2168, 2641, 2732, 4320, 4452, 4677 |
| BsmFI | GGGAC | 2 cut(s) | 3334, 4189 |
| BsmI | GAATGC | 2 cut(s) | 124, 4876 |
| BsnI | GGCC | 6 cut(s) | 129, 1112, 3933, 4284, 4559, 5006 |
| Bso31I | GGTCTC | 2 cut(s) | 2168, 2641 |
| BsoBI | CYCGRG | 1 cut(s) | 1922 |
| Bsp119I | TTCGAA | 1 cut(s) | 526 |
| Bsp120I | GGGCCC | 1 cut(s) | 3931 |
| Bsp1286I | GDGCHC | 5 cut(s) | 307, 1020, 1779, 3935, 4516 |
| Bsp1407I | TGTACA | 1 cut(s) | 4479 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 760 |
| BspANI | GGCC | 6 cut(s) | 129, 1112, 3933, 4284, 4559, 5006 |
| BspHI | TCATGA | 4 cut(s) | 969, 3519, 3739, 3976 |
| BspMAI | CTGCAG | 4 cut(s) | 1789, 1795, 2019, 2047 |
| BspMI | ACCTGC | 5 cut(s) | 1302, 1639, 1792, 2138, 2196 |
| BspPI | GGATC | 5 cut(s) | 1623, 3048, 3061, 3668, 5010 |
| BspQI | GCTCTTC | 2 cut(s) | 1278, 3094 |
| BspT104I | TTCGAA | 1 cut(s) | 526 |
| BspT107I | GGYRCC | 4 cut(s) | 302, 2918, 3947, 5030 |
| BspTI | CTTAAG | 1 cut(s) | 4343 |
| BspTNI | GGTCTC | 2 cut(s) | 2168, 2641 |
| BsrBI | CCGCTC | 1 cut(s) | 4797 |
| BsrDI | GCAATG | 5 cut(s) | 1312, 2869, 4033, 4851, 5004 |
| BsrGI | TGTACA | 1 cut(s) | 4479 |
| BsrI | ACTGG | 7 cut(s) | 794, 1199, 1770, 3304, 3677, 4124, 4902 |
| BssECI | CCNNGG | 9 cut(s) | 245, 400, 1104, 1922, 2355, 2511, 2778, 4408, 4554 |
| BssNAI | GTATAC | 1 cut(s) | 1270 |
| BssNI | GRCGYC | 2 cut(s) | 2529, 3948 |
| BssT1I | CCWWGG | 5 cut(s) | 245, 2355, 2778, 4408, 4554 |
| Bst1107I | GTATAC | 1 cut(s) | 1270 |
| Bst2UI | CCWGG | 6 cut(s) | 402, 904, 1105, 2513, 2824, 3392 |
| Bst6I | CTCTTC | 6 cut(s) | 1158, 1278, 1944, 2414, 3094, 3692 |
| BstACI | GRCGYC | 2 cut(s) | 2529, 3948 |
| BstAFI | CTTAAG | 1 cut(s) | 4343 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1294, 1973, 2051, 2060 |
| BstAUI | TGTACA | 1 cut(s) | 4479 |
| BstBAI | YACGTR | 2 cut(s) | 1845, 2519 |
| BstBI | TTCGAA | 1 cut(s) | 526 |
| BstC8I | GCNNGC | 9 cut(s) | 434, 1907, 2285, 2439, 2583, 4170, 4641, 4888, 4995 |
| BstH2I | RGCGCY | 1 cut(s) | 3951 |
| BstHHI | GCGC | 2 cut(s) | 3950, 4258 |
| BstMAI | GTCTC | 9 cut(s) | 161, 243, 1579, 2168, 2641, 2732, 4320, 4452, 4677 |
| BstNI | CCWGG | 6 cut(s) | 402, 904, 1105, 2513, 2824, 3392 |
| BstNSI | RCATGY | 5 cut(s) | 1016, 1665, 1909, 3065, 3518 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2547, 3850 |
| BstSFI | CTRYAG | 7 cut(s) | 837, 1785, 1791, 2015, 2043, 3150, 4488 |
| BstSLI | GKGCMC | 4 cut(s) | 307, 1020, 3935, 4516 |
| BstV2I | GAAGAC | 4 cut(s) | 216, 1008, 2565, 4674 |
| BstX2I | RGATCY | 3 cut(s) | 278, 1615, 3053 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2519 |
| BstYI | RGATCY | 3 cut(s) | 278, 1615, 3053 |
| BstZ17I | GTATAC | 1 cut(s) | 1270 |
| Bsu36I | CCTNAGG | 2 cut(s) | 624, 4279 |
| BsuI | GTATCC | 1 cut(s) | 910 |
| BsuRI | GGCC | 6 cut(s) | 129, 1112, 3933, 4284, 4559, 5006 |
| BtrI | CACGTC | 1 cut(s) | 2662 |
| BtsI | GCAGTG | 1 cut(s) | 3423 |
| BveI | ACCTGC | 5 cut(s) | 1302, 1639, 1792, 2138, 2196 |
| Cac8I | GCNNGC | 9 cut(s) | 434, 1907, 2285, 2439, 2583, 4170, 4641, 4888, 4995 |
| CaiI | CAGNNNCTG | 6 cut(s) | 316, 989, 1799, 2042, 3964, 4094 |
| CciI | TCATGA | 4 cut(s) | 969, 3519, 3739, 3976 |
| CfoI | GCGC | 2 cut(s) | 3950, 4258 |
| Cfr13I | GGNCC | 7 cut(s) | 127, 249, 394, 1322, 3180, 3931, 3932 |
| Cfr9I | CCCGGG | 1 cut(s) | 1922 |
| CseI | GACGC | 1 cut(s) | 2537 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5008, 5043 |
| DinI | GGCGCC | 1 cut(s) | 3949 |
| DraIII | CACNNNGTG | 1 cut(s) | 3792 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1042 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1042 |
| Eam1104I | CTCTTC | 6 cut(s) | 1158, 1278, 1944, 2414, 3094, 3692 |
| EarI | CTCTTC | 6 cut(s) | 1158, 1278, 1944, 2414, 3094, 3692 |
| Ecl136II | GAGCTC | 1 cut(s) | 1777 |
| Eco130I | CCWWGG | 5 cut(s) | 245, 2355, 2778, 4408, 4554 |
| Eco24I | GRGCYC | 2 cut(s) | 1779, 3935 |
| Eco31I | GGTCTC | 2 cut(s) | 2168, 2641 |
| Eco32I | GATATC | 2 cut(s) | 1182, 2804 |
| Eco47I | GGWCC | 4 cut(s) | 249, 394, 1322, 3180 |
| Eco53kI | GAGCTC | 1 cut(s) | 1777 |
| Eco57I | CTGAAG | 8 cut(s) | 539, 950, 1116, 1980, 2577, 2852, 3189, 4418 |
| Eco72I | CACGTG | 1 cut(s) | 2519 |
| Eco81I | CCTNAGG | 2 cut(s) | 624, 4279 |
| Eco88I | CYCGRG | 1 cut(s) | 1922 |
| EcoICRI | GAGCTC | 1 cut(s) | 1777 |
| EcoO109I | RGGNCCY | 5 cut(s) | 249, 394, 3180, 3931, 3932 |
| EcoRI | GAATTC | 5 cut(s) | 111, 157, 424, 2455, 3413 |
| EcoRII | CCWGG | 6 cut(s) | 400, 902, 1103, 2511, 2822, 3390 |
| EcoRV | GATATC | 2 cut(s) | 1182, 2804 |
| EcoT14I | CCWWGG | 5 cut(s) | 245, 2355, 2778, 4408, 4554 |
| EcoT22I | ATGCAT | 3 cut(s) | 727, 1978, 4571 |
| EcoT38I | GRGCYC | 2 cut(s) | 1779, 3935 |
| EgeI | GGCGCC | 1 cut(s) | 3949 |
| EheI | GGCGCC | 1 cut(s) | 3949 |
| ErhI | CCWWGG | 5 cut(s) | 245, 2355, 2778, 4408, 4554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3622, 3654 |
| FaqI | GGGAC | 2 cut(s) | 3334, 4189 |
| FauI | CCCGC | 2 cut(s) | 146, 3281 |
| FauNDI | CATATG | 1 cut(s) | 2277 |
| FbaI | TGATCA | 4 cut(s) | 505, 2074, 2386, 4228 |
| FblI | GTMKAC | 1 cut(s) | 1269 |
| FriOI | GRGCYC | 2 cut(s) | 1779, 3935 |
| FspBI | CTAG | 8 cut(s) | 1619, 2265, 2676, 2853, 2859, 3117, 4611, 4664 |
| GlaI | GCGC | 2 cut(s) | 3949, 4257 |
| GsaI | CCCAGC | 3 cut(s) | 993, 3286, 4176 |
| GsuI | CTGGAG | 2 cut(s) | 423, 3585 |
| HaeII | RGCGCY | 1 cut(s) | 3951 |
| HaeIII | GGCC | 6 cut(s) | 129, 1112, 3933, 4284, 4559, 5006 |
| HapII | CCGG | 5 cut(s) | 80, 920, 1874, 1923, 3057 |
| HgaI | GACGC | 1 cut(s) | 2537 |
| HhaI | GCGC | 2 cut(s) | 3950, 4258 |
| Hin1I | GRCGYC | 2 cut(s) | 2529, 3948 |
| Hin6I | GCGC | 2 cut(s) | 3948, 4256 |
| HinP1I | GCGC | 2 cut(s) | 3948, 4256 |
| HincII | GTYRAC | 3 cut(s) | 2467, 2508, 3124 |
| HindII | GTYRAC | 3 cut(s) | 2467, 2508, 3124 |
| HindIII | AAGCTT | 3 cut(s) | 932, 1098, 4991 |
| HpaI | GTTAAC | 2 cut(s) | 2508, 3124 |
| HpaII | CCGG | 5 cut(s) | 80, 920, 1874, 1923, 3057 |
| HphI | GGTGA | 9 cut(s) | 726, 731, 923, 1138, 2804, 3138, 3422, 4157, 4679 |
| Hpy166II | GTNNAC | 8 cut(s) | 1270, 1334, 2467, 2508, 3124, 4480, 4597, 4604 |
| Hpy8I | GTNNAC | 8 cut(s) | 1270, 1334, 2467, 2508, 3124, 4480, 4597, 4604 |
| HpyCH4IV | ACGT | 5 cut(s) | 1844, 2469, 2518, 2661, 4469 |
| HpySE526I | ACGT | 5 cut(s) | 1844, 2469, 2518, 2661, 4469 |
| Hsp92I | GRCGYC | 2 cut(s) | 2529, 3948 |
| HspAI | GCGC | 2 cut(s) | 3948, 4256 |
| KasI | GGCGCC | 1 cut(s) | 3947 |
| Ksp22I | TGATCA | 4 cut(s) | 505, 2074, 2386, 4228 |
| KspAI | GTTAAC | 2 cut(s) | 2508, 3124 |
| LguI | GCTCTTC | 2 cut(s) | 1278, 3094 |
| MaeI | CTAG | 8 cut(s) | 1619, 2265, 2676, 2853, 2859, 3117, 4611, 4664 |
| MaeII | ACGT | 5 cut(s) | 1844, 2469, 2518, 2661, 4469 |
| MaeIII | GTNAC | 9 cut(s) | 378, 1232, 1713, 1937, 3302, 3421, 3857, 4158, 4790 |
| MbiI | CCGCTC | 1 cut(s) | 4797 |
| MfeI | CAATTG | 2 cut(s) | 4022, 4715 |
| MflI | RGATCY | 3 cut(s) | 278, 1615, 3053 |
| MhlI | GDGCHC | 5 cut(s) | 307, 1020, 1779, 3935, 4516 |
| Mly113I | GGCGCC | 1 cut(s) | 3948 |
| MlyI | GAGTC | 8 cut(s) | 1003, 1175, 1581, 2014, 2858, 3709, 4010, 4679 |
| MmeI | TCCRAC | 3 cut(s) | 524, 2452, 4767 |
| Mph1103I | ATGCAT | 3 cut(s) | 727, 1978, 4571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4110 |
| MslI | CAYNNNNRTG | 7 cut(s) | 2028, 3531, 3537, 4521, 4574, 4589, 4914 |
| MspA1I | CMGCKG | 2 cut(s) | 1790, 4883 |
| MspCI | CTTAAG | 1 cut(s) | 4343 |
| MspI | CCGG | 5 cut(s) | 80, 920, 1874, 1923, 3057 |
| MunI | CAATTG | 2 cut(s) | 4022, 4715 |
| Mva1269I | GAATGC | 2 cut(s) | 124, 4876 |
| MvaI | CCWGG | 6 cut(s) | 402, 904, 1105, 2513, 2824, 3392 |
| NarI | GGCGCC | 1 cut(s) | 3948 |
| NciI | CCSGG | 4 cut(s) | 80, 1923, 1924, 3058 |
| NdeI | CATATG | 1 cut(s) | 2277 |
| NmuCI | GTSAC | 5 cut(s) | 378, 1937, 3421, 3857, 4158 |
| NsiI | ATGCAT | 3 cut(s) | 727, 1978, 4571 |
| NspI | RCATGY | 5 cut(s) | 1016, 1665, 1909, 3065, 3518 |
| NspV | TTCGAA | 1 cut(s) | 526 |
| PaeI | GCATGC | 1 cut(s) | 1909 |
| PagI | TCATGA | 4 cut(s) | 969, 3519, 3739, 3976 |
| PaqCI | CACCTGC | 1 cut(s) | 2196 |
| PciSI | GCTCTTC | 2 cut(s) | 1278, 3094 |
| PctI | GAATGC | 2 cut(s) | 124, 4876 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4110 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4720 |
| PfoI | TCCNGGA | 2 cut(s) | 902, 2822 |
| PleI | GAGTC | 8 cut(s) | 1002, 1174, 1580, 2014, 2857, 3708, 4009, 4678 |
| PluTI | GGCGCC | 1 cut(s) | 3951 |
| PmaCI | CACGTG | 1 cut(s) | 2519 |
| PmlI | CACGTG | 1 cut(s) | 2519 |
| PpsI | GAGTC | 8 cut(s) | 1002, 1174, 1580, 2014, 2857, 3708, 4009, 4678 |
| Ppu21I | YACGTR | 2 cut(s) | 1845, 2519 |
| PpuMI | RGGWCCY | 3 cut(s) | 249, 394, 3180 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2547, 3850 |
| Psp124BI | GAGCTC | 1 cut(s) | 1779 |
| Psp5II | RGGWCCY | 3 cut(s) | 249, 394, 3180 |
| Psp6I | CCWGG | 6 cut(s) | 400, 902, 1103, 2511, 2822, 3390 |
| PspCI | CACGTG | 1 cut(s) | 2519 |
| PspFI | CCCAGC | 3 cut(s) | 989, 3282, 4172 |
| PspGI | CCWGG | 6 cut(s) | 400, 902, 1103, 2511, 2822, 3390 |
| PspOMI | GGGCCC | 1 cut(s) | 3931 |
| PspPI | GGNCC | 7 cut(s) | 127, 249, 394, 1322, 3180, 3931, 3932 |
| PspPPI | RGGWCCY | 3 cut(s) | 249, 394, 3180 |
| PstI | CTGCAG | 4 cut(s) | 1789, 1795, 2019, 2047 |
| PstNI | CAGNNNCTG | 6 cut(s) | 316, 989, 1799, 2042, 3964, 4094 |
| PsuI | RGATCY | 3 cut(s) | 278, 1615, 3053 |
| PvuII | CAGCTG | 2 cut(s) | 1790, 4883 |
| RseI | CAYNNNNRTG | 7 cut(s) | 2028, 3531, 3537, 4521, 4574, 4589, 4914 |
| SacI | GAGCTC | 1 cut(s) | 1779 |
| SapI | GCTCTTC | 2 cut(s) | 1278, 3094 |
| Sau96I | GGNCC | 7 cut(s) | 127, 249, 394, 1322, 3180, 3931, 3932 |
| ScaI | AGTACT | 3 cut(s) | 2049, 2857, 4486 |
| SchI | GAGTC | 8 cut(s) | 1003, 1175, 1581, 2014, 2858, 3709, 4010, 4679 |
| SduI | GDGCHC | 5 cut(s) | 307, 1020, 1779, 3935, 4516 |
| SfcI | CTRYAG | 7 cut(s) | 837, 1785, 1791, 2015, 2043, 3150, 4488 |
| SfoI | GGCGCC | 1 cut(s) | 3949 |
| SfuI | TTCGAA | 1 cut(s) | 526 |
| SinI | GGWCC | 4 cut(s) | 249, 394, 1322, 3180 |
| SmaI | CCCGGG | 1 cut(s) | 1924 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 2028, 3531, 3537, 4521, 4574, 4589, 4914 |
| SmlI | CTYRAG | 4 cut(s) | 654, 935, 4343, 4855 |
| SmoI | CTYRAG | 4 cut(s) | 654, 935, 4343, 4855 |
| SphI | GCATGC | 1 cut(s) | 1909 |
| SspDI | GGCGCC | 1 cut(s) | 3947 |
| SspI | AATATT | 2 cut(s) | 1432, 3757 |
| SspMI | CTAG | 8 cut(s) | 1619, 2265, 2676, 2853, 2859, 3117, 4611, 4664 |
| SstI | GAGCTC | 1 cut(s) | 1779 |
| StyI | CCWWGG | 5 cut(s) | 245, 2355, 2778, 4408, 4554 |
| TaiI | ACGT | 5 cut(s) | 1847, 2472, 2521, 2664, 4472 |
| TaqI | TCGA | 4 cut(s) | 526, 997, 2272, 5014 |
| TatI | WGTACW | 7 cut(s) | 2047, 2589, 2855, 4213, 4479, 4484, 4613 |
| TauI | GCSGC | 3 cut(s) | 1250, 1852, 4533 |
| TseFI | GTSAC | 5 cut(s) | 378, 1937, 3421, 3857, 4158 |
| Tsp45I | GTSAC | 5 cut(s) | 378, 1937, 3421, 3857, 4158 |
| TspGWI | ACGGA | 3 cut(s) | 436, 4761, 4970 |
| TspMI | CCCGGG | 1 cut(s) | 1922 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4720 |
| Vha464I | CTTAAG | 1 cut(s) | 4343 |
| VpaK11BI | GGWCC | 4 cut(s) | 249, 394, 1322, 3180 |
| XceI | RCATGY | 5 cut(s) | 1016, 1665, 1909, 3065, 3518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3464 |
| XmaI | CCCGGG | 1 cut(s) | 1922 |
| XmiI | GTMKAC | 1 cut(s) | 1269 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4110 |
| XspI | CTAG | 8 cut(s) | 1619, 2265, 2676, 2853, 2859, 3117, 4611, 4664 |
| ZrmI | AGTACT | 3 cut(s) | 2049, 2857, 4486 |
| Zsp2I | ATGCAT | 3 cut(s) | 727, 1978, 4571 |