CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08084 FvH4_4g17693 |
| malus_domestica | MD13G1170600.v1.1 MD16G1172200.v1.1 |
| prunus_persica | Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 Prupe.1G139000_v2.0.a1 |
| pyrus_communis | pycom13g14620 pycom16g14450 |
| rosa_chinensis | RchiOBHm_Chr4g0421671 |
| rosa_laevigata | RLG00000007660 |
| rosa_multiflora | Rmu_sc0004533.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00363910 |
| rosa_rugosa | Rorug04G0174300 Rorug04G0174400 Rorug04G0174400 Rorug04G0174500 Rorug04G0174500 |
| rosa_samantha | Rh4AG233800 Rh4BG236900 Rh4CG248700 Rh4DG232600 |
| rosa_wichuraiana | Rw0G007710 Rw4G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 2811, 4954 |
| Acc36I | ACCTGC | 4 cut(s) | 1362, 1699, 1852, 2110 |
| Acc65I | GGTACC | 1 cut(s) | 1919 |
| AccB1I | GGYRCC | 3 cut(s) | 787, 1919, 4004 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 194 |
| AccII | CGCG | 2 cut(s) | 2332, 3777 |
| AciI | CCGC | 9 cut(s) | 162, 263, 1229, 1903, 2294, 4074, 4594, 4611, 4858 |
| AclI | AACGTT | 1 cut(s) | 81 |
| AclWI | GGATC | 4 cut(s) | 1683, 3579, 3716, 5073 |
| AcoI | YGGCCR | 1 cut(s) | 2291 |
| AcuI | CTGAAG | 9 cut(s) | 548, 1110, 1287, 1815, 2031, 2637, 3510, 3633, 4481 |
| AcvI | CACGTG | 1 cut(s) | 2579 |
| AcyI | GRCGYC | 1 cut(s) | 2412 |
| AflII | CTTAAG | 1 cut(s) | 4406 |
| AhlI | ACTAGT | 1 cut(s) | 2912 |
| AjiI | CACGTC | 1 cut(s) | 2713 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1709, 1741 |
| Alw21I | GWGCWC | 2 cut(s) | 346, 382 |
| Alw44I | GTGCAC | 1 cut(s) | 342 |
| AlwI | GGATC | 4 cut(s) | 1683, 3579, 3716, 5073 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 980, 2093, 2102 |
| Ama87I | CYCGRG | 1 cut(s) | 849 |
| AoxI | GGCC | 5 cut(s) | 136, 185, 2291, 4620, 5067 |
| ApaLI | GTGCAC | 1 cut(s) | 342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4403, 4435 |
| AseI | ATTAAT | 2 cut(s) | 1148, 4263 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1132 |
| Asp718I | GGTACC | 1 cut(s) | 1919 |
| AspLEI | GCGC | 2 cut(s) | 2812, 4955 |
| AspS9I | GGNCC | 4 cut(s) | 136, 185, 3228, 4155 |
| AsuC2I | CCSGG | 4 cut(s) | 89, 850, 851, 3376 |
| AsuII | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| AvaI | CYCGRG | 1 cut(s) | 849 |
| AvaII | GGWCC | 2 cut(s) | 3228, 4155 |
| AxyI | CCTNAGG | 1 cut(s) | 633 |
| BaeGI | GKGCMC | 4 cut(s) | 346, 4009, 4015, 4579 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1311, 1311, 1344, 1344 |
| BanI | GGYRCC | 3 cut(s) | 787, 1919, 4004 |
| BanII | GRGCYC | 1 cut(s) | 3992 |
| BauI | CACGAG | 1 cut(s) | 949 |
| BbrPI | CACGTG | 1 cut(s) | 2579 |
| BbsI | GAAGAC | 3 cut(s) | 225, 752, 4737 |
| Bbv12I | GWGCWC | 2 cut(s) | 346, 382 |
| BceAI | ACGGC | 2 cut(s) | 224, 4463 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4556, 4590 |
| BciVI | GTATCC | 2 cut(s) | 1339, 2767 |
| BclI | TGATCA | 4 cut(s) | 2125, 2446, 3733, 4291 |
| BcnI | CCSGG | 4 cut(s) | 89, 850, 851, 3376 |
| BcuI | ACTAGT | 1 cut(s) | 2912 |
| BfmI | CTRYAG | 7 cut(s) | 828, 1845, 2066, 2094, 2103, 3394, 4551 |
| BfrI | CTTAAG | 1 cut(s) | 4406 |
| BfuAI | ACCTGC | 4 cut(s) | 1362, 1699, 1852, 2110 |
| BfuI | GTATCC | 2 cut(s) | 1339, 2767 |
| BglII | AGATCT | 1 cut(s) | 287 |
| BmcAI | AGTACT | 4 cut(s) | 2557, 2911, 3400, 4549 |
| Bme18I | GGWCC | 2 cut(s) | 3228, 4155 |
| BmeT110I | CYCGRG | 1 cut(s) | 849 |
| BmgBI | CACGTC | 1 cut(s) | 2713 |
| BmgT120I | GGNCC | 4 cut(s) | 136, 185, 3228, 4155 |
| BmiI | GGNNCC | 9 cut(s) | 186, 789, 1921, 3154, 3534, 3649, 4006, 4156, 4477 |
| BpiI | GAAGAC | 3 cut(s) | 225, 752, 4737 |
| BpmI | CTGGAG | 2 cut(s) | 747, 4710 |
| Bpu14I | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| BpuEI | CTTGAG | 5 cut(s) | 438, 648, 947, 1039, 2462 |
| BpuMI | CCSGG | 4 cut(s) | 89, 850, 851, 3376 |
| BsaAI | YACGTR | 1 cut(s) | 2579 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2130, 2508, 3873 |
| BsaHI | GRCGYC | 1 cut(s) | 2412 |
| BsaI | GGTCTC | 3 cut(s) | 252, 977, 2228 |
| Bse118I | RCCGGY | 1 cut(s) | 2289 |
| Bse1I | ACTGG | 8 cut(s) | 1259, 2563, 2771, 2907, 3352, 3725, 4187, 4819 |
| Bse21I | CCTNAGG | 1 cut(s) | 633 |
| Bse3DI | GCAATG | 4 cut(s) | 1480, 4096, 4914, 5067 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2130, 2508, 3873 |
| BseJI | GATNNNNATC | 3 cut(s) | 2130, 2508, 3873 |
| BseMI | GCAATG | 4 cut(s) | 1480, 4096, 4914, 5067 |
| BseNI | ACTGG | 8 cut(s) | 1259, 2563, 2771, 2907, 3352, 3725, 4187, 4819 |
| BseRI | GAGGAG | 5 cut(s) | 32, 848, 1782, 4330, 4713 |
| BseSI | GKGCMC | 4 cut(s) | 346, 4009, 4015, 4579 |
| BseX3I | CGGCCG | 1 cut(s) | 2291 |
| BsgI | GTGCAG | 3 cut(s) | 1340, 3650, 3667 |
| Bsh1236I | CGCG | 2 cut(s) | 2332, 3777 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2294 |
| BshFI | GGCC | 5 cut(s) | 138, 187, 2293, 4622, 5069 |
| BshNI | GGYRCC | 3 cut(s) | 787, 1919, 4004 |
| BsiEI | CGRYCG | 1 cut(s) | 2294 |
| BsiHKAI | GWGCWC | 2 cut(s) | 346, 382 |
| BsiHKCI | CYCGRG | 1 cut(s) | 849 |
| BsiSI | CCGG | 4 cut(s) | 89, 850, 2290, 3376 |
| BslFI | GGGAC | 6 cut(s) | 389, 428, 2777, 4058, 4252, 4912 |
| BsmBI | CGTCTC | 2 cut(s) | 869, 3934 |
| BsmFI | GGGAC | 6 cut(s) | 389, 428, 2777, 4058, 4252, 4912 |
| BsmI | GAATGC | 4 cut(s) | 2236, 2521, 3061, 4939 |
| BsnI | GGCC | 5 cut(s) | 138, 187, 2293, 4622, 5069 |
| Bso31I | GGTCTC | 3 cut(s) | 252, 977, 2228 |
| BsoBI | CYCGRG | 1 cut(s) | 849 |
| Bsp119I | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| Bsp1286I | GDGCHC | 6 cut(s) | 346, 382, 3992, 4009, 4015, 4579 |
| Bsp1407I | TGTACA | 2 cut(s) | 1382, 4542 |
| Bsp68I | TCGCGA | 1 cut(s) | 2332 |
| BspACI | CCGC | 9 cut(s) | 162, 263, 1229, 1903, 2294, 4074, 4594, 4611, 4858 |
| BspANI | GGCC | 5 cut(s) | 138, 187, 2293, 4622, 5069 |
| BspFNI | CGCG | 2 cut(s) | 2332, 3777 |
| BspHI | TCATGA | 1 cut(s) | 751 |
| BspLI | GGNNCC | 9 cut(s) | 186, 789, 1921, 3154, 3534, 3649, 4006, 4156, 4477 |
| BspMAI | CTGCAG | 5 cut(s) | 1849, 2070, 2098, 2107, 3398 |
| BspMI | ACCTGC | 4 cut(s) | 1362, 1699, 1852, 2110 |
| BspPI | GGATC | 4 cut(s) | 1683, 3579, 3716, 5073 |
| BspQI | GCTCTTC | 2 cut(s) | 1338, 3142 |
| BspT104I | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| BspT107I | GGYRCC | 3 cut(s) | 787, 1919, 4004 |
| BspTI | CTTAAG | 1 cut(s) | 4406 |
| BspTNI | GGTCTC | 3 cut(s) | 252, 977, 2228 |
| BsrDI | GCAATG | 4 cut(s) | 1480, 4096, 4914, 5067 |
| BsrFI | RCCGGY | 1 cut(s) | 2289 |
| BsrGI | TGTACA | 2 cut(s) | 1382, 4542 |
| BsrI | ACTGG | 8 cut(s) | 1259, 2563, 2771, 2907, 3352, 3725, 4187, 4819 |
| BssAI | RCCGGY | 1 cut(s) | 2289 |
| BssNI | GRCGYC | 1 cut(s) | 2412 |
| BssSI | CACGAG | 1 cut(s) | 949 |
| BssT1I | CCWWGG | 6 cut(s) | 618, 2530, 3117, 4102, 4471, 4806 |
| Bst2BI | CACGAG | 1 cut(s) | 949 |
| Bst6I | CTCTTC | 5 cut(s) | 1338, 1998, 2481, 3142, 3740 |
| BstACI | GRCGYC | 1 cut(s) | 2412 |
| BstAFI | CTTAAG | 1 cut(s) | 4406 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2027, 2102, 4699 |
| BstAUI | TGTACA | 2 cut(s) | 1382, 4542 |
| BstBAI | YACGTR | 1 cut(s) | 2579 |
| BstBI | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| BstC8I | GCNNGC | 5 cut(s) | 1961, 2070, 2345, 4951, 5058 |
| BstEII | GGTNACC | 1 cut(s) | 1058 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 226, 1068, 2534, 4149 |
| BstFNI | CGCG | 2 cut(s) | 2332, 3777 |
| BstHHI | GCGC | 2 cut(s) | 2812, 4955 |
| BstMCI | CGRYCG | 1 cut(s) | 2294 |
| BstNSI | RCATGY | 3 cut(s) | 131, 1725, 1963 |
| BstPI | GGTNACC | 1 cut(s) | 1058 |
| BstSFI | CTRYAG | 7 cut(s) | 828, 1845, 2066, 2094, 2103, 3394, 4551 |
| BstSLI | GKGCMC | 4 cut(s) | 346, 4009, 4015, 4579 |
| BstUI | CGCG | 2 cut(s) | 2332, 3777 |
| BstV2I | GAAGAC | 3 cut(s) | 225, 752, 4737 |
| BstX2I | RGATCY | 2 cut(s) | 287, 1675 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2579, 3035 |
| BstYI | RGATCY | 2 cut(s) | 287, 1675 |
| BstZI | CGGCCG | 1 cut(s) | 2291 |
| Bsu36I | CCTNAGG | 1 cut(s) | 633 |
| BsuI | GTATCC | 2 cut(s) | 1339, 2767 |
| BsuRI | GGCC | 5 cut(s) | 138, 187, 2293, 4622, 5069 |
| BtrI | CACGTC | 1 cut(s) | 2713 |
| BtsIMutI | CAGTG | 8 cut(s) | 382, 524, 2005, 3472, 3551, 3732, 3925, 4197 |
| BtuMI | TCGCGA | 1 cut(s) | 2332 |
| BveI | ACCTGC | 4 cut(s) | 1362, 1699, 1852, 2110 |
| Cac8I | GCNNGC | 5 cut(s) | 1961, 2070, 2345, 4951, 5058 |
| CaiI | CAGNNNCTG | 3 cut(s) | 980, 2093, 2102 |
| CciI | TCATGA | 1 cut(s) | 751 |
| CfoI | GCGC | 2 cut(s) | 2812, 4955 |
| Cfr10I | RCCGGY | 1 cut(s) | 2289 |
| Cfr13I | GGNCC | 4 cut(s) | 136, 185, 3228, 4155 |
| Cfr9I | CCCGGG | 1 cut(s) | 849 |
| CseI | GACGC | 1 cut(s) | 2420 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5071, 5106 |
| DraI | TTTAAA | 3 cut(s) | 492, 2190, 2886 |
| EaeI | YGGCCR | 1 cut(s) | 2291 |
| EagI | CGGCCG | 1 cut(s) | 2291 |
| Eam1104I | CTCTTC | 5 cut(s) | 1338, 1998, 2481, 3142, 3740 |
| EarI | CTCTTC | 5 cut(s) | 1338, 1998, 2481, 3142, 3740 |
| EclXI | CGGCCG | 1 cut(s) | 2291 |
| Eco130I | CCWWGG | 6 cut(s) | 618, 2530, 3117, 4102, 4471, 4806 |
| Eco24I | GRGCYC | 1 cut(s) | 3992 |
| Eco31I | GGTCTC | 3 cut(s) | 252, 977, 2228 |
| Eco32I | GATATC | 3 cut(s) | 741, 1176, 2858 |
| Eco47I | GGWCC | 2 cut(s) | 3228, 4155 |
| Eco52I | CGGCCG | 1 cut(s) | 2291 |
| Eco57I | CTGAAG | 9 cut(s) | 548, 1110, 1287, 1815, 2031, 2637, 3510, 3633, 4481 |
| Eco72I | CACGTG | 1 cut(s) | 2579 |
| Eco81I | CCTNAGG | 1 cut(s) | 633 |
| Eco88I | CYCGRG | 1 cut(s) | 849 |
| Eco91I | GGTNACC | 1 cut(s) | 1058 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 226, 1068, 2534, 4149 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3228 |
| EcoO65I | GGTNACC | 1 cut(s) | 1058 |
| EcoRI | GAATTC | 2 cut(s) | 954, 3461 |
| EcoRV | GATATC | 3 cut(s) | 741, 1176, 2858 |
| EcoT14I | CCWWGG | 6 cut(s) | 618, 2530, 3117, 4102, 4471, 4806 |
| EcoT22I | ATGCAT | 3 cut(s) | 2032, 3061, 4634 |
| EcoT38I | GRGCYC | 1 cut(s) | 3992 |
| ErhI | CCWWGG | 6 cut(s) | 618, 2530, 3117, 4102, 4471, 4806 |
| Esp3I | CGTCTC | 2 cut(s) | 869, 3934 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1120, 1152, 1493, 1525, 3670, 3702 |
| FaqI | GGGAC | 6 cut(s) | 389, 428, 2777, 4058, 4252, 4912 |
| FauI | CCCGC | 3 cut(s) | 155, 4067, 4601 |
| FbaI | TGATCA | 4 cut(s) | 2125, 2446, 3733, 4291 |
| FriOI | GRGCYC | 1 cut(s) | 3992 |
| FspI | TGCGCA | 2 cut(s) | 2811, 4954 |
| GlaI | GCGC | 2 cut(s) | 2811, 4954 |
| GsuI | CTGGAG | 2 cut(s) | 747, 4710 |
| HaeIII | GGCC | 5 cut(s) | 138, 187, 2293, 4622, 5069 |
| HapII | CCGG | 4 cut(s) | 89, 850, 2290, 3376 |
| HgaI | GACGC | 1 cut(s) | 2420 |
| HhaI | GCGC | 2 cut(s) | 2812, 4955 |
| Hin1I | GRCGYC | 1 cut(s) | 2412 |
| Hin6I | GCGC | 2 cut(s) | 2810, 4953 |
| HinP1I | GCGC | 2 cut(s) | 2810, 4953 |
| HincII | GTYRAC | 2 cut(s) | 85, 3172 |
| HindII | GTYRAC | 2 cut(s) | 85, 3172 |
| HindIII | AAGCTT | 5 cut(s) | 330, 923, 1092, 1507, 5054 |
| HpaI | GTTAAC | 1 cut(s) | 3172 |
| HpaII | CCGG | 4 cut(s) | 89, 850, 2290, 3376 |
| Hpy166II | GTNNAC | 9 cut(s) | 85, 344, 676, 3050, 3172, 4279, 4543, 4660, 4667 |
| Hpy8I | GTNNAC | 9 cut(s) | 85, 344, 676, 3050, 3172, 4279, 4543, 4660, 4667 |
| HpyCH4IV | ACGT | 3 cut(s) | 81, 2578, 2712 |
| HpySE526I | ACGT | 3 cut(s) | 81, 2578, 2712 |
| Hsp92I | GRCGYC | 1 cut(s) | 2412 |
| HspAI | GCGC | 2 cut(s) | 2810, 4953 |
| KpnI | GGTACC | 1 cut(s) | 1923 |
| Ksp22I | TGATCA | 4 cut(s) | 2125, 2446, 3733, 4291 |
| KspAI | GTTAAC | 1 cut(s) | 3172 |
| LguI | GCTCTTC | 2 cut(s) | 1338, 3142 |
| LmnI | GCTCC | 8 cut(s) | 1000, 1795, 1855, 2462, 4142, 4343, 4475, 4726 |
| MaeII | ACGT | 3 cut(s) | 81, 2578, 2712 |
| MfeI | CAATTG | 2 cut(s) | 2988, 4085 |
| MflI | RGATCY | 2 cut(s) | 287, 1675 |
| MhlI | GDGCHC | 6 cut(s) | 346, 382, 3992, 4009, 4015, 4579 |
| MmeI | TCCRAC | 2 cut(s) | 533, 1062 |
| Mph1103I | ATGCAT | 3 cut(s) | 2032, 3061, 4634 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1132 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2079, 3585, 4584, 4637, 4977 |
| MspA1I | CMGCKG | 3 cut(s) | 1229, 4613, 4946 |
| MspCI | CTTAAG | 1 cut(s) | 4406 |
| MspI | CCGG | 4 cut(s) | 89, 850, 2290, 3376 |
| MunI | CAATTG | 2 cut(s) | 2988, 4085 |
| Mva1269I | GAATGC | 4 cut(s) | 2236, 2521, 3061, 4939 |
| MvnI | CGCG | 2 cut(s) | 2332, 3777 |
| NciI | CCSGG | 4 cut(s) | 89, 850, 851, 3376 |
| NlaIV | GGNNCC | 9 cut(s) | 186, 789, 1921, 3154, 3534, 3649, 4006, 4156, 4477 |
| NmuCI | GTSAC | 8 cut(s) | 387, 667, 1058, 1991, 2408, 2950, 3367, 3914 |
| NruI | TCGCGA | 1 cut(s) | 2332 |
| NsbI | TGCGCA | 2 cut(s) | 2811, 4954 |
| NsiI | ATGCAT | 3 cut(s) | 2032, 3061, 4634 |
| NspI | RCATGY | 3 cut(s) | 131, 1725, 1963 |
| NspV | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| PaeI | GCATGC | 1 cut(s) | 1963 |
| PagI | TCATGA | 1 cut(s) | 751 |
| PciSI | GCTCTTC | 2 cut(s) | 1338, 3142 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PctI | GAATGC | 4 cut(s) | 2236, 2521, 3061, 4939 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1132 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 194 |
| PmaCI | CACGTG | 1 cut(s) | 2579 |
| PmlI | CACGTG | 1 cut(s) | 2579 |
| Ppu21I | YACGTR | 1 cut(s) | 2579 |
| PpuMI | RGGWCCY | 1 cut(s) | 3228 |
| PshBI | ATTAAT | 2 cut(s) | 1148, 4263 |
| Psp1406I | AACGTT | 1 cut(s) | 81 |
| Psp5II | RGGWCCY | 1 cut(s) | 3228 |
| PspCI | CACGTG | 1 cut(s) | 2579 |
| PspEI | GGTNACC | 1 cut(s) | 1058 |
| PspN4I | GGNNCC | 9 cut(s) | 186, 789, 1921, 3154, 3534, 3649, 4006, 4156, 4477 |
| PspPI | GGNCC | 4 cut(s) | 136, 185, 3228, 4155 |
| PspPPI | RGGWCCY | 1 cut(s) | 3228 |
| PstI | CTGCAG | 5 cut(s) | 1849, 2070, 2098, 2107, 3398 |
| PstNI | CAGNNNCTG | 3 cut(s) | 980, 2093, 2102 |
| PsuI | RGATCY | 2 cut(s) | 287, 1675 |
| PvuII | CAGCTG | 1 cut(s) | 4946 |
| RruI | TCGCGA | 1 cut(s) | 2332 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2079, 3585, 4584, 4637, 4977 |
| SapI | GCTCTTC | 2 cut(s) | 1338, 3142 |
| Sau96I | GGNCC | 4 cut(s) | 136, 185, 3228, 4155 |
| ScaI | AGTACT | 4 cut(s) | 2557, 2911, 3400, 4549 |
| SduI | GDGCHC | 6 cut(s) | 346, 382, 3992, 4009, 4015, 4579 |
| SfcI | CTRYAG | 7 cut(s) | 828, 1845, 2066, 2094, 2103, 3394, 4551 |
| SfuI | TTCGAA | 3 cut(s) | 535, 3140, 4428 |
| SinI | GGWCC | 2 cut(s) | 3228, 4155 |
| SmaI | CCCGGG | 1 cut(s) | 851 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2079, 3585, 4584, 4637, 4977 |
| SmlI | CTYRAG | 6 cut(s) | 453, 663, 926, 1018, 2477, 4406 |
| SmoI | CTYRAG | 6 cut(s) | 453, 663, 926, 1018, 2477, 4406 |
| SpeI | ACTAGT | 1 cut(s) | 2912 |
| SphI | GCATGC | 1 cut(s) | 1963 |
| SsiI | CCGC | 9 cut(s) | 162, 263, 1229, 1903, 2294, 4074, 4594, 4611, 4858 |
| SspI | AATATT | 2 cut(s) | 3316, 3355 |
| StyI | CCWWGG | 6 cut(s) | 618, 2530, 3117, 4102, 4471, 4806 |
| TaiI | ACGT | 3 cut(s) | 84, 2581, 2715 |
| TaqII | GACCGA | 1 cut(s) | 3841 |
| TatI | WGTACW | 7 cut(s) | 1382, 2555, 2909, 3398, 4542, 4547, 4676 |
| TauI | GCSGC | 2 cut(s) | 1906, 2296 |
| TscAI | CASTG | 8 cut(s) | 382, 531, 2005, 3472, 3551, 3732, 3925, 4204 |
| TseFI | GTSAC | 8 cut(s) | 387, 667, 1058, 1991, 2408, 2950, 3367, 3914 |
| Tsp45I | GTSAC | 8 cut(s) | 387, 667, 1058, 1991, 2408, 2950, 3367, 3914 |
| TspGWI | ACGGA | 1 cut(s) | 5033 |
| TspMI | CCCGGG | 1 cut(s) | 849 |
| TspRI | CASTG | 8 cut(s) | 382, 531, 2005, 3472, 3551, 3732, 3925, 4204 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 194 |
| Vha464I | CTTAAG | 1 cut(s) | 4406 |
| VneI | GTGCAC | 1 cut(s) | 342 |
| VpaK11BI | GGWCC | 2 cut(s) | 3228, 4155 |
| VspI | ATTAAT | 2 cut(s) | 1148, 4263 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 226, 1068, 2534, 4149 |
| XceI | RCATGY | 3 cut(s) | 131, 1725, 1963 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3512 |
| XmaI | CCCGGG | 1 cut(s) | 849 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1132 |
| ZrmI | AGTACT | 4 cut(s) | 2557, 2911, 3400, 4549 |
| Zsp2I | ATGCAT | 3 cut(s) | 2032, 3061, 4634 |