Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Forward (+)

14240463 .. 14241506

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTGTACATAGTGTTGATCGTAATGTTGGCGCAGCACCAGAAGCAATTCTAGAGAACGTATGGGCCAGCTTTATTGGTGTTGATGGAGGAAATGAAGGAACAAGCGACACAACAAACATGTCAAAAGCCTGGGAAGAACTACCAAGTCTTGATGGAAGAGAAGGATCATTAGAAGTTCTTCAAAGGCTACCAAGTCTGGGTAGGTGGATGTCAATGGGAGCTGAGGCCTGGGAAGAGCTTCTCGACACTTGCGGTATTCCTTCTTGTCATATTGAGAAGTCTTGCGGTGACAAATTACAGGGAAATGAGGCTGCCAAACTAGCCATGGAAGAGATGGTTGAGAGAGTAGAGAAAGTGGCAACAAAGCATTATCGTGGAGTTAGGAGAAGGCCATGGGGAAAGTATGCAGCAGAAATCAGAGACTCGTCAAGAAAAGGAGCTAGAGTTTGGCTTGGGACTTTCGAGACTGCTGAGGAGGCAGCTTTGGCGTATGACAAAGCTGCTTTGAGAATCAGAGGTACAAAAGCACATCTTAACTTCCCTTTTGAAAGAGTTGCAAAGGCTGTTGGACTTGAGAATTGCAGCCTCAACAATATTTGTTCCCCTACAACTTCTCACAATGGTTTGAATCCTCTCAAGAGAGGAGTGCGAGAGTGGGAAGAAAATGTTGAGGTAATGACTACAAAATCTGCATCAAAACGAAACGTAAGCATGGAAAAAATGTTCAAAGATGAGTTTGATGTGTTTGAGTTCCAAGACCTGGGAAGTGACTACTTGGACAGTTTGCTCTCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

5.34

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 174	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	763
AciI	CCGC	2 cut(s)	255, 288
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	9, 523
AfiI	CCNNNNNNNGG	2 cut(s)	200, 763
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	185, 551, 631, 730
AjnI	CCWGG	3 cut(s)	131, 230, 762
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	6 cut(s)	72, 224, 241, 443, 485, 503
AluI	AGCT	6 cut(s)	72, 224, 241, 443, 485, 503
Alw26I	GTCTC	2 cut(s)	417, 461
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	3 cut(s)	66, 228, 392
ApeKI	GCWGC	6 cut(s)	35, 314, 410, 482, 503, 585
Asp700I	GAANNNNTTC	3 cut(s)	48, 180, 240
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	302
BbvCI	CCTCAGC	2 cut(s)	225, 474
BbvI	GCAGC	6 cut(s)	47, 301, 422, 490, 494, 597
BccI	CCATC	3 cut(s)	80, 149, 331
BciT130I	CCWGG	3 cut(s)	133, 232, 764
BcoDI	GTCTC	2 cut(s)	417, 461
BfaI	CTAG	3 cut(s)	53, 323, 444
BisI	GCNGC	6 cut(s)	36, 315, 411, 483, 504, 586
BlsI	GCNGC	6 cut(s)	37, 316, 412, 484, 505, 587
Bme1390I	CCNGG	3 cut(s)	133, 232, 764
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	3 cut(s)	133, 232, 764
BmsI	GCATC	1 cut(s)	704
Bpu10I	CCTNAGC	2 cut(s)	225, 474
BpuEI	CTTGAG	2 cut(s)	596, 623
BsaJI	CCNNGG	5 cut(s)	132, 231, 327, 395, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 763
BseBI	CCWGG	3 cut(s)	133, 232, 764
BseDI	CCNNGG	5 cut(s)	132, 231, 327, 395, 763
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	200, 763
BseMII	CTCAG	2 cut(s)	216, 465
BseRI	GAGGAG	2 cut(s)	491, 660
BseXI	GCAGC	6 cut(s)	47, 301, 422, 490, 494, 597
BshFI	GGCC	3 cut(s)	68, 230, 394
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	200, 763
BsmAI	GTCTC	2 cut(s)	417, 461
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	68, 230, 394
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	19, 167
Bsp19I	CCATGG	2 cut(s)	327, 395
BspACI	CCGC	2 cut(s)	255, 288
BspANI	GGCC	3 cut(s)	68, 230, 394
BspCNI	CTCAG	2 cut(s)	217, 466
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	7
BssECI	CCNNGG	5 cut(s)	132, 231, 327, 395, 763
BssMI	GATC	2 cut(s)	19, 167
BssT1I	CCWWGG	2 cut(s)	327, 395
Bst2UI	CCWGG	3 cut(s)	133, 232, 764
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	4 cut(s)	154, 231, 327, 799
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	225, 474
BstDSI	CCRYGG	2 cut(s)	327, 395
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	22, 170
BstMAI	GTCTC	2 cut(s)	417, 461
BstMBI	GATC	2 cut(s)	19, 167
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 323, 479, 488
BstNI	CCWGG	3 cut(s)	133, 232, 764
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	131, 230, 762
BstV1I	GCAGC	6 cut(s)	47, 301, 422, 490, 494, 597
BsuRI	GGCC	3 cut(s)	68, 230, 394
BtgI	CCRYGG	2 cut(s)	327, 395
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	8, 522
CviAII	CATG	4 cut(s)	121, 328, 396, 715
CviQI	GTAC	2 cut(s)	8, 522
DdeI	CTNAG	2 cut(s)	225, 474
DpnI	GATC	2 cut(s)	21, 169
DpnII	GATC	2 cut(s)	19, 167
Eam1104I	CTCTTC	4 cut(s)	154, 231, 327, 799
EarI	CTCTTC	4 cut(s)	154, 231, 327, 799
Eco130I	CCWWGG	2 cut(s)	327, 395
Eco147I	AGGCCT	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	131, 230, 762
EcoT14I	CCWWGG	2 cut(s)	327, 395
ErhI	CCWWGG	2 cut(s)	327, 395
FaeI	CATG	4 cut(s)	124, 331, 399, 718
FaiI	YATR	9 cut(s)	12, 64, 122, 273, 329, 397, 408, 495, 716
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	120, 327, 395, 714
Fnu4HI	GCNGC	6 cut(s)	36, 315, 411, 483, 504, 586
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	6 cut(s)	36, 315, 411, 483, 504, 586
FspBI	CTAG	3 cut(s)	53, 323, 444
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	6 cut(s)	36, 315, 411, 483, 504, 586
HaeIII	GGCC	3 cut(s)	68, 230, 394
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	124, 331, 399, 718
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	425, 513, 631
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	422, 518
Hpy188III	TCNNGA	6 cut(s)	53, 152, 245, 432, 466, 640
HpyAV	CCTTC	4 cut(s)	92, 158, 273, 384
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	2 cut(s)	60, 708
HpyCH4V	TGCA	4 cut(s)	410, 560, 585, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 323, 479, 488
HpyF3I	CTNAG	2 cut(s)	225, 474
HpySE526I	ACGT	2 cut(s)	60, 708
Hsp92II	CATG	4 cut(s)	124, 331, 399, 718
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	19, 167
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	221, 440
Lsp1109I	GCAGC	6 cut(s)	47, 301, 422, 490, 494, 597
LweI	GCATC	1 cut(s)	704
MaeI	CTAG	3 cut(s)	53, 323, 444
MaeII	ACGT	2 cut(s)	60, 708
MaeIII	GTNAC	2 cut(s)	290, 770
MalI	GATC	2 cut(s)	21, 169
MboI	GATC	2 cut(s)	19, 167
MboII	GAAGA	7 cut(s)	149, 171, 173, 248, 344, 674, 786
MluCI	AATT	3 cut(s)	48, 296, 580
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	550
MroXI	GAANNNNTTC	3 cut(s)	48, 180, 240
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	3 cut(s)	133, 232, 764
MvaI	CCWGG	3 cut(s)	133, 232, 764
MwoI	GCNNNNNNNGC	4 cut(s)	44, 323, 479, 488
NcoI	CCATGG	2 cut(s)	327, 395
NdeII	GATC	2 cut(s)	19, 167
NlaIII	CATG	4 cut(s)	124, 331, 399, 718
NmuCI	GTSAC	2 cut(s)	290, 770
NspI	RCATGY	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	231
PdmI	GAANNNNTTC	3 cut(s)	48, 180, 240
PfeI	GAWTC	2 cut(s)	513, 631
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	6 cut(s)	37, 316, 412, 484, 505, 587
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PscI	ACATGT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	131, 230, 762
PspGI	CCWGG	3 cut(s)	131, 230, 762
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	9, 523
RsaNI	GTAC	2 cut(s)	8, 522
RseI	CAYNNNNRTG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	6 cut(s)	36, 315, 411, 483, 504, 586
Sau3AI	GATC	2 cut(s)	19, 167
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	133, 232, 764
SfaNI	GCATC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	575, 638
SmoI	CTYRAG	2 cut(s)	575, 638
Sse9I	AATT	3 cut(s)	48, 296, 580
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	255, 288
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	3 cut(s)	53, 323, 444
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	131, 230, 762
StyI	CCWWGG	2 cut(s)	327, 395
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	2 cut(s)	63, 711
TaqI	TCGA	2 cut(s)	246, 465
TasI	AATT	3 cut(s)	48, 296, 580
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	513, 631
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TseFI	GTSAC	2 cut(s)	290, 770
TseI	GCWGC	6 cut(s)	35, 314, 410, 482, 503, 585
Tsp45I	GTSAC	2 cut(s)	290, 770
TspDTI	ATGAA	2 cut(s)	111, 786
Van91I	CCANNNNNTGG	1 cut(s)	763
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 334
XmnI	GAANNNNTTC	3 cut(s)	48, 180, 240
XspI	CTAG	3 cut(s)	53, 323, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.