Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Reverse (-)

60156989 .. 60158041

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0445400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCTCTTTTCAACTCGGCCTTGTTGGCGAAGCAAGGGTGGAGAATCATTTGTAGGCCTGAGTCTTTATTGGCTAGGGTGTTTAAGGCAAAGTACTTCTCTACCACAGAGTTCATGCAGGCTGATTGTGCTACTGGGGTGTCCTATGTTTGGCGGAGCGTACTGAAAGGCAAGGAGGTGCTTAGTAAAGGGGTGAGATATCATATTGGGAATGGGGAAAGCATTTCAATTTGGAATGATCCTCGGGTTCCTTTACCTTATCACTTTAGCCAAATTCCTTTGAGCTTAAATGGGGGTGTTGACCTGCTGGTGTGGCACTGGATTAAGAATGGGAGGTATAGTGTGAAGAATGGGTACCATATTGCTGATCACCTGGGGATTAGAGCGTCGGTGTCCAGTTCTGGTTCGAACTCGGTGATGGCTCGATCTTGGAATAAGATGTGGAGGGTGAACGTTCCTCCAAAGGTCCGCATGCTTGCTTGGCGTCTTGTTAAGGTAATATTACCCACTAGAGCTGCCCTCTACTCTAGGGTTCAGCTCCCAGACGTGCAGTGCGTGTTTTATTACAAAGGTGTGGAAGATGGTCTACACTTATTCAAGAACTGCAAAGCTGTGGAAGTCTTTTGGATGAATGGACCGTTGAAGTTACAAATTGGTAAGCATTCTGCATGTGTCTTGGTTGAGTGGTTTTGGGACATGGTAAATAGTTTGCATGGGGATCTGTTGGAGTACTTCTCGGTGGGACTTTGGGCTATTTGGATGGAGAGGAATAACATGGTTTGGAAGGGGGCTAATTACAATCCCACTAATATGGTGTCATGGACAGTGGCTTTCCTTGATGACTACAAAAAACTTCATCAACGTTATGGGCACAAAACAAAGAGAAGCATTACCAAGTGGGCCTTTCCCCTAGGGGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

307

Amino Acids

35.33

Weight (kDa)

9.85

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	141 - 209	2.4e-11	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	586
AciI	CCGC	2 cut(s)	154, 469
AclI	AACGTT	2 cut(s)	453, 862
AclWI	GGATC	2 cut(s)	233, 726
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	4 cut(s)	95, 162, 356, 731
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	13, 228, 598, 643
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	5 cut(s)	285, 515, 538, 611, 921
AluI	AGCT	5 cut(s)	285, 515, 538, 611, 921
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	233, 726
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	3 cut(s)	18, 56, 900
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	354
AspA2I	CCTAGG	1 cut(s)	910
AspS9I	GGNCC	3 cut(s)	466, 635, 900
AsuHPI	GGTGA	4 cut(s)	205, 362, 427, 460
AsuII	TTCGAA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	466, 635
AvrII	CCTAGG	1 cut(s)	910
BaeGI	GKGCMC	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	4 cut(s)	338, 370, 570, 602
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	3 cut(s)	412, 575, 754
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	4 cut(s)	75, 510, 528, 911
BfuAI	ACCTGC	1 cut(s)	312
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	516
BlnI	CCTAGG	1 cut(s)	910
BlsI	GCNGC	1 cut(s)	517
BmcAI	AGTACT	2 cut(s)	95, 731
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	466, 635
BmeT110I	CYCGRG	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	466, 635, 900
BmiI	GGNNCC	2 cut(s)	249, 356
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BplI	GAGNNNNNCTC	4 cut(s)	504, 536, 719, 751
Bpu14I	TTCGAA	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	242, 373, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	3 cut(s)	139, 323, 396
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	242, 373, 910
BseGI	GGATG	2 cut(s)	633, 765
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	139, 323, 396
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	3 cut(s)	20, 58, 902
BshNI	GGYRCC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	243
BslFI	GGGAC	2 cut(s)	707, 756
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	707, 756
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	20, 58, 902
BsoBI	CYCGRG	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	4 cut(s)	238, 367, 425, 718
BspACI	CCGC	2 cut(s)	154, 469
BspANI	GGCC	3 cut(s)	20, 58, 902
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	249, 356
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	233, 726
BspT104I	TTCGAA	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	354
BsrI	ACTGG	3 cut(s)	139, 323, 396
BssECI	CCNNGG	3 cut(s)	242, 373, 910
BssMI	GATC	4 cut(s)	238, 367, 425, 718
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	910
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	639, 826
BstACI	GRCGYC	1 cut(s)	484
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	120, 473, 477, 919
BstDEI	CTNAG	2 cut(s)	60, 182
BstF5I	GGATG	2 cut(s)	633, 765
BstKTI	GATC	4 cut(s)	241, 370, 428, 721
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	238, 367, 425, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 128, 313, 481
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	475, 672
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	873
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	20, 58, 902
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	633, 765
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	3 cut(s)	316, 557, 831
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	120, 473, 477, 919
Cfr13I	GGNCC	3 cut(s)	466, 635, 900
CseI	GACGC	2 cut(s)	375, 473
Csp6I	GTAC	4 cut(s)	94, 161, 355, 730
CviAII	CATG	7 cut(s)	115, 472, 669, 697, 713, 775, 819
CviQI	GTAC	4 cut(s)	94, 161, 355, 730
DdeI	CTNAG	2 cut(s)	60, 182
DpnI	GATC	4 cut(s)	240, 369, 427, 720
DpnII	GATC	4 cut(s)	238, 367, 425, 718
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	910
Eco147I	AGGCCT	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	466, 635
Eco88I	CYCGRG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	910
FaeI	CATG	7 cut(s)	118, 475, 672, 700, 716, 778, 822
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	2 cut(s)	707, 756
FatI	CATG	7 cut(s)	114, 471, 668, 696, 712, 774, 818
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	640, 772
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	4 cut(s)	75, 510, 528, 911
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	20, 58, 902
HgaI	GACGC	2 cut(s)	375, 473
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	7 cut(s)	118, 475, 672, 700, 716, 778, 822
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	45, 62
HphI	GGTGA	4 cut(s)	205, 362, 427, 460
Hpy166II	GTNNAC	3 cut(s)	301, 451, 587
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	3 cut(s)	301, 451, 587
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	2 cut(s)	639, 826
HpyCH4IV	ACGT	3 cut(s)	453, 546, 862
HpyCH4V	TGCA	5 cut(s)	118, 550, 606, 668, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 128, 313, 481
HpyF3I	CTNAG	2 cut(s)	60, 182
HpySE526I	ACGT	3 cut(s)	453, 546, 862
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	7 cut(s)	118, 475, 672, 700, 716, 778, 822
KpnI	GGTACC	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	238, 367, 425, 718
LmnI	GCTCC	2 cut(s)	156, 543
Lsp1109I	GCAGC	1 cut(s)	502
MaeI	CTAG	4 cut(s)	75, 510, 528, 911
MaeII	ACGT	3 cut(s)	453, 546, 862
MaeIII	GTNAC	1 cut(s)	645
MalI	GATC	4 cut(s)	240, 369, 427, 720
MboI	GATC	4 cut(s)	238, 367, 425, 718
MboII	GAAGA	2 cut(s)	358, 590
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	4 cut(s)	228, 273, 651, 793
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	7 cut(s)	169, 252, 327, 438, 468, 530, 759
MseI	TTAA	4 cut(s)	84, 287, 324, 492
MslI	CAYNNNNRTG	1 cut(s)	809
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	4 cut(s)	26, 128, 313, 481
NdeII	GATC	4 cut(s)	238, 367, 425, 718
NlaIII	CATG	7 cut(s)	118, 475, 672, 700, 716, 778, 822
NlaIV	GGNNCC	2 cut(s)	249, 356
NspI	RCATGY	2 cut(s)	475, 672
NspV	TTCGAA	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp1406I	AACGTT	2 cut(s)	453, 862
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	249, 356
PspPI	GGNCC	3 cut(s)	466, 635, 900
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	4 cut(s)	95, 162, 356, 731
RsaNI	GTAC	4 cut(s)	94, 161, 355, 730
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	4 cut(s)	84, 287, 324, 492
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	238, 367, 425, 718
Sau96I	GGNCC	3 cut(s)	466, 635, 900
ScaI	AGTACT	2 cut(s)	95, 731
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	407
SinI	GGWCC	2 cut(s)	466, 635
SmiMI	CAYNNNNRTG	1 cut(s)	809
SphI	GCATGC	1 cut(s)	475
Sse9I	AATT	4 cut(s)	228, 273, 651, 793
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	154, 469
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	4 cut(s)	75, 510, 528, 911
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	2 cut(s)	639, 826
TaiI	ACGT	3 cut(s)	456, 549, 865
TaqI	TCGA	2 cut(s)	407, 424
TasI	AATT	4 cut(s)	228, 273, 651, 793
TatI	WGTACW	2 cut(s)	93, 729
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	4 cut(s)	84, 287, 324, 492
Tru9I	TTAA	4 cut(s)	84, 287, 324, 492
TscAI	CASTG	3 cut(s)	323, 557, 831
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	103, 644, 845
TspRI	CASTG	3 cut(s)	323, 557, 831
VpaK11BI	GGWCC	2 cut(s)	466, 635
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	2 cut(s)	475, 672
XmaJI	CCTAGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	4 cut(s)	75, 510, 528, 911
ZrmI	AGTACT	2 cut(s)	95, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.