Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Forward (+)

37566372 .. 37567175

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1286200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACTGTACATAGTGATATTCATGCAGAAAAGCCAGCATCTGAAGATATTCATGCAGAAAAGCCAGCATATGAGGCTATAGTACTAGAGAACGTGTGGGCGAGCTTTATCGGTGTGGATGGACCCAAAAACGCAACAGAATTGTCTCAATCCTGGGAAGATATGCCTCCTCTTGATGGGAGAGAAGGTTCAATGGAAGTTCTACAAAGGCTACCAAGCCTAGGTAGGTGGATATCAATGGGAACTGAGGCCTGGGAGGAGCTTCTGGACAGTGTTGTTGGTCCTGCACAAAATACGGAGCAGTCTTGCAATGACAAGTTAGAAGGCAATGGAACTACAAATTTGGAATGTGAAGCAAAGGTCGAGAGAGCAAAGAAAGTGGAAATTGCGAAGCACTACCGCGGAGTTAGGAGGCGGCCGTGGGGCAAGTATGCAGCAGAGATTAGGGACTCAACAAGAAAAGGGGCTAGGGTTTGGCTTGGGACTTTTGAGACTGCTGAGGAGGCCGCTTTGGCTTATGACAAGGCTGCTTTGAGAATTAGAGGCTCAAAGGCACATCTTAACTTCCCCCTTGAAACAGTTGCAAAGGCCATGGGATTGGATTTCTTCAGCATTTCTTTATCCTCAATTGGTTCGAATCCTCGGAAGAGAGGGTTGAGAGATTGGGAAGAAAATGTTGAGGAAAGAAAACCTGCAGTGAAGAGGAAGGCAAGCATGCAAAAGATGTGTGATCATGAATTTGATGTATTTGAGTTCCAAGACCTGGGAAGTGACTACTTGGACAGTTTGCTGTCTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

29.96

Weight (kDa)

5.34

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	132 - 182	1.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccII	CGCG	1 cut(s)	402
AciI	CCGC	4 cut(s)	400, 402, 415, 507
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	340, 737
AcuI	CTGAAG	2 cut(s)	63, 592
AfaI	GTAC	2 cut(s)	9, 84
AfiI	CCNNNNNNNGG	3 cut(s)	176, 221, 763
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	192, 575
AjnI	CCWGG	3 cut(s)	152, 251, 762
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	2 cut(s)	105, 262
AluI	AGCT	2 cut(s)	105, 262
Alw26I	GTCTC	2 cut(s)	150, 485
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	4 cut(s)	249, 416, 504, 588
ApeKI	GCWGC	2 cut(s)	434, 527
ApoI	RAATTY	2 cut(s)	340, 737
Asp700I	GAANNNNTTC	1 cut(s)	48
AspA2I	CCTAGG	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	122, 281
AsuII	TTCGAA	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	122, 281
AvrII	CCTAGG	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	786
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	446, 514
BccI	CCATC	2 cut(s)	113, 170
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	3 cut(s)	154, 253, 764
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	150, 485
BfaI	CTAG	3 cut(s)	86, 221, 468
BfmI	CTRYAG	2 cut(s)	78, 693
BfuAI	ACCTGC	1 cut(s)	700
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	4 cut(s)	416, 435, 507, 528
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	4 cut(s)	417, 436, 508, 529
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	3 cut(s)	154, 253, 764
Bme18I	GGWCC	2 cut(s)	122, 281
BmgT120I	GGNCC	2 cut(s)	122, 281
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	154, 253, 764
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	635
BsaJI	CCNNGG	8 cut(s)	153, 220, 252, 400, 419, 591, 641, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 221, 763
Bse3DI	GCAATG	2 cut(s)	316, 334
BseBI	CCWGG	3 cut(s)	154, 253, 764
BseDI	CCNNGG	8 cut(s)	153, 220, 252, 400, 419, 591, 641, 763
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	3 cut(s)	176, 221, 763
BseMI	GCAATG	2 cut(s)	316, 334
BseMII	CTCAG	2 cut(s)	237, 489
BseRI	GAGGAG	3 cut(s)	159, 272, 515
BseX3I	CGGCCG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	446, 514
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	4 cut(s)	251, 418, 506, 590
BsiEI	CGRYCG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	461, 496
BslI	CCNNNNNNNGG	3 cut(s)	176, 221, 763
BsmAI	GTCTC	2 cut(s)	150, 485
BsmFI	GGGAC	2 cut(s)	461, 496
BsnI	GGCC	4 cut(s)	251, 418, 506, 590
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	730
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	400, 402, 415, 507
BspANI	GGCC	4 cut(s)	251, 418, 506, 590
BspCNI	CTCAG	2 cut(s)	238, 490
BspFNI	CGCG	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	316, 334
BsrGI	TGTACA	1 cut(s)	7
BssECI	CCNNGG	8 cut(s)	153, 220, 252, 400, 419, 591, 641, 763
BssMI	GATC	1 cut(s)	730
BssT1I	CCWWGG	2 cut(s)	220, 591
Bst2UI	CCWGG	3 cut(s)	154, 253, 764
Bst4CI	ACNGT	4 cut(s)	7, 272, 580, 785
Bst6I	CTCTTC	2 cut(s)	641, 695
BstAUI	TGTACA	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	5 cut(s)	36, 66, 103, 712, 716
BstDEI	CTNAG	2 cut(s)	246, 498
BstDSI	CCRYGG	3 cut(s)	400, 419, 591
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	2 cut(s)	150, 485
BstMBI	GATC	1 cut(s)	730
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 503, 512
BstNI	CCWGG	3 cut(s)	154, 253, 764
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	3 cut(s)	152, 251, 762
BstSFI	CTRYAG	2 cut(s)	78, 693
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	446, 514
BstV2I	GAAGAC	1 cut(s)	786
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstZI	CGGCCG	1 cut(s)	416
BsuRI	GGCC	4 cut(s)	251, 418, 506, 590
BtgI	CCRYGG	3 cut(s)	400, 419, 591
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	277, 702
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	5 cut(s)	36, 66, 103, 712, 716
CaiI	CAGNNNCTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	122, 281
Cfr42I	CCGCGG	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	8, 83
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	5 cut(s)	23, 53, 592, 715, 734
CviQI	GTAC	2 cut(s)	8, 83
DdeI	CTNAG	2 cut(s)	246, 498
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
EaeI	YGGCCR	1 cut(s)	416
EagI	CGGCCG	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	641, 695
EarI	CTCTTC	2 cut(s)	641, 695
EclXI	CGGCCG	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	220, 591
Eco147I	AGGCCT	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	122, 281
Eco52I	CGGCCG	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	63, 592
EcoRII	CCWGG	3 cut(s)	152, 251, 762
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	220, 591
ErhI	CCWWGG	2 cut(s)	220, 591
FaeI	CATG	5 cut(s)	26, 56, 595, 718, 737
FaqI	GGGAC	2 cut(s)	461, 496
FatI	CATG	5 cut(s)	22, 52, 591, 714, 733
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	416, 435, 507, 528
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	416, 435, 507, 528
FspBI	CTAG	3 cut(s)	86, 221, 468
GluI	GCNGC	4 cut(s)	416, 435, 507, 528
HaeIII	GGCC	4 cut(s)	251, 418, 506, 590
Hin1II	CATG	5 cut(s)	26, 56, 595, 718, 737
HinfI	GANTC	2 cut(s)	449, 637
Hpy188I	TCNGA	2 cut(s)	43, 645
Hpy188III	TCNNGA	4 cut(s)	173, 266, 364, 734
HpyAV	CCTTC	3 cut(s)	179, 317, 700
HpyCH4III	ACNGT	4 cut(s)	7, 272, 580, 785
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	8 cut(s)	26, 56, 287, 309, 434, 584, 695, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 503, 512
HpyF3I	CTNAG	2 cut(s)	246, 498
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	26, 56, 595, 718, 737
Ksp22I	TGATCA	1 cut(s)	730
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	730
LmnI	GCTCC	2 cut(s)	259, 298
Lsp1109I	GCAGC	2 cut(s)	446, 514
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	3 cut(s)	86, 221, 468
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	770
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MboII	GAAGA	7 cut(s)	56, 170, 598, 658, 680, 712, 786
MfeI	CAATTG	1 cut(s)	627
MluCI	AATT	6 cut(s)	140, 340, 384, 537, 627, 737
MlyI	GAGTC	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	402
MspR9I	CCNGG	3 cut(s)	154, 253, 764
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	3 cut(s)	154, 253, 764
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	74, 503, 512
NcoI	CCATGG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	730
NlaIII	CATG	5 cut(s)	26, 56, 595, 718, 737
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	1 cut(s)	718
NspV	TTCGAA	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	718
PagI	TCATGA	1 cut(s)	733
PceI	AGGCCT	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	4 cut(s)	417, 436, 508, 529
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp6I	CCWGG	3 cut(s)	152, 251, 762
PspGI	CCWGG	3 cut(s)	152, 251, 762
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	122, 281
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	9, 84
RsaNI	GTAC	2 cut(s)	8, 83
SacII	CCGCGG	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	4 cut(s)	416, 435, 507, 528
Sau3AI	GATC	1 cut(s)	730
Sau96I	GGNCC	2 cut(s)	122, 281
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	3 cut(s)	154, 253, 764
SetI	ASST	9 cut(s)	96, 107, 190, 226, 230, 264, 363, 694, 765
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	78, 693
Sfr303I	CCGCGG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	635
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	2 cut(s)	122, 281
SphI	GCATGC	1 cut(s)	718
Sse9I	AATT	6 cut(s)	140, 340, 384, 537, 627, 737
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	4 cut(s)	400, 402, 415, 507
SspMI	CTAG	3 cut(s)	86, 221, 468
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	152, 251, 762
StyI	CCWWGG	2 cut(s)	220, 591
TaaI	ACNGT	4 cut(s)	7, 272, 580, 785
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	363, 635
TasI	AATT	6 cut(s)	140, 340, 384, 537, 627, 737
TatI	WGTACW	2 cut(s)	7, 82
TauI	GCSGC	2 cut(s)	418, 509
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	277, 702
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	2 cut(s)	434, 527
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	3 cut(s)	11, 41, 750
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	277, 702
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	122, 281
XapI	RAATTY	2 cut(s)	340, 737
XceI	RCATGY	1 cut(s)	718
XmaJI	CCTAGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	3 cut(s)	86, 221, 468
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.