Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Reverse (-)

7416047 .. 7416865

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTGTACATAGTGTTGATCATGATTCTGCTGCTGCACCAGAAGCTATTCTCGAGAACGTGTGGGCCAGCTTTATTGGTGTTGATGGAGGGAAAGAAGAAACAAGCAACACACCAGAAATGTCGAAATCATGGGAAGAACTGCCTAGTCTTGATGGGGGAGAAGGATCAATGGAAATTCTTCAAAGGCTACCAAGTCTCGGTAGGTGGATGTCAATGGGAGCTGAGGCCTGGGAAGAGCTTCTCGACACTTGCATTATTCCTTCTTGTGATGTTGTAAAGTCTTGCAATGAAAAATTAGAGGGAAATGAGGATGCCAAACCGGACGCTGAAGAGAAGGTTGAGAGAGTAGTTGAGAGAGTAGAGAAAGTGGCAACAAAGCATTACCGCGGTGTTAGGAGACGGCCATGGGGAAAATATGCAGCAGAAATTCGAGACTCATCAAGAAAAGGAGCTAGAGTTTGGCTTGGGACTTTCGAGACTGCTGAGGAGGCAGCTCTGGCATATGACAAAGCTGCTTTAAGAATCAGAGGTACAAAAGCGCATCTTAACTTCCCTTTTGAAACAGTTGCAAAGGCTTTGGGACTTGGGAATTGCAGCTTCAACAATATTTGCTCCTCCACAACTTCTTCTCAGAATGGTTTGAATCCTCGTAAGAGAGGAGTGAGAGAGTGGGAAGAAAATGTTGAGGTAATGACTGGAGAACCTGCATCAAAAAGAAACGCAAGCATGGAAAAGATGTTTGGAGATGAGTTTGATGTGTTTGAATTCCAAGACCTGGGAAGTGATTACTTGGACAGTTTGCTCTCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

273

Amino Acids

30.19

Weight (kDa)

4.86

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	128 - 178	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	715
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccII	CGCG	1 cut(s)	390
AciI	CCGC	2 cut(s)	388, 390
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	3 cut(s)	177, 429, 767
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	9, 535
AfiI	CCNNNNNNNGG	2 cut(s)	200, 778
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	5 cut(s)	185, 563, 604, 646, 767
AjnI	CCWGG	2 cut(s)	230, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	8 cut(s)	47, 72, 224, 241, 455, 497, 515, 600
AluI	AGCT	8 cut(s)	47, 72, 224, 241, 455, 497, 515, 600
Alw26I	GTCTC	4 cut(s)	203, 394, 429, 473
AlwI	GGATC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	66, 228, 404
ApeKI	GCWGC	6 cut(s)	32, 35, 422, 494, 515, 597
ApoI	RAATTY	3 cut(s)	177, 429, 767
Asp700I	GAANNNNTTC	3 cut(s)	48, 180, 240
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	53
BbvCI	CCTCAGC	2 cut(s)	225, 486
BbvI	GCAGC	6 cut(s)	19, 22, 434, 502, 506, 609
BccI	CCATC	2 cut(s)	80, 149
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	2 cut(s)	232, 779
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	4 cut(s)	203, 394, 429, 473
BfaI	CTAG	2 cut(s)	147, 456
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	6 cut(s)	33, 36, 423, 495, 516, 598
BlsI	GCNGC	6 cut(s)	34, 37, 424, 496, 517, 599
Bme1390I	CCNGG	2 cut(s)	232, 779
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	232, 779
BmsI	GCATC	3 cut(s)	304, 553, 719
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	2 cut(s)	225, 486
BsaJI	CCNNGG	4 cut(s)	231, 388, 407, 778
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 778
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	232, 779
BseDI	CCNNGG	4 cut(s)	231, 388, 407, 778
BseGI	GGATG	2 cut(s)	216, 319
BseLI	CCNNNNNNNGG	2 cut(s)	200, 778
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	3 cut(s)	216, 477, 647
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	3 cut(s)	503, 607, 675
BseXI	GCAGC	6 cut(s)	19, 22, 434, 502, 506, 609
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	68, 230, 406
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	484, 597
BslI	CCNNNNNNNGG	2 cut(s)	200, 778
BsmAI	GTCTC	4 cut(s)	203, 394, 429, 473
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	484, 597
BsnI	GGCC	3 cut(s)	68, 230, 406
BsoBI	CYCGRG	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	19, 167
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	2 cut(s)	388, 390
BspANI	GGCC	3 cut(s)	68, 230, 406
BspCNI	CTCAG	3 cut(s)	217, 478, 646
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	4 cut(s)	231, 388, 407, 778
BssMI	GATC	2 cut(s)	19, 167
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	232, 779
Bst4CI	ACNGT	2 cut(s)	568, 800
Bst6I	CTCTTC	3 cut(s)	231, 327, 814
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	70, 727
BstDEI	CTNAG	3 cut(s)	225, 486, 633
BstDSI	CCRYGG	2 cut(s)	388, 407
BstF5I	GGATG	2 cut(s)	216, 319
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	22, 170
BstMAI	GTCTC	4 cut(s)	203, 394, 429, 473
BstMBI	GATC	2 cut(s)	19, 167
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 491, 500
BstNI	CCWGG	2 cut(s)	232, 779
BstSCI	CCNGG	2 cut(s)	230, 777
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	6 cut(s)	19, 22, 434, 502, 506, 609
BsuRI	GGCC	3 cut(s)	68, 230, 406
BtgI	CCRYGG	2 cut(s)	388, 407
BtsCI	GGATG	2 cut(s)	216, 319
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	2 cut(s)	70, 727
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	391
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	8, 534
CviAII	CATG	4 cut(s)	23, 132, 408, 730
CviQI	GTAC	2 cut(s)	8, 534
DdeI	CTNAG	3 cut(s)	225, 486, 633
DpnI	GATC	2 cut(s)	21, 169
DpnII	GATC	2 cut(s)	19, 167
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	3 cut(s)	231, 327, 814
EarI	CTCTTC	3 cut(s)	231, 327, 814
Eco130I	CCWWGG	1 cut(s)	407
Eco147I	AGGCCT	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	2 cut(s)	230, 777
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	4 cut(s)	26, 135, 411, 733
FaiI	YATR	8 cut(s)	12, 24, 133, 409, 420, 505, 507, 731
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	484, 597
FatI	CATG	4 cut(s)	22, 131, 407, 729
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	6 cut(s)	33, 36, 423, 495, 516, 598
FokI	GGATG	2 cut(s)	223, 326
Fsp4HI	GCNGC	6 cut(s)	33, 36, 423, 495, 516, 598
FspBI	CTAG	2 cut(s)	147, 456
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	6 cut(s)	33, 36, 423, 495, 516, 598
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	3 cut(s)	68, 230, 406
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	4 cut(s)	26, 135, 411, 733
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	4 cut(s)	26, 437, 525, 646
HpaII	CCGG	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	530, 636
Hpy188III	TCNNGA	8 cut(s)	23, 53, 55, 152, 245, 434, 444, 478
HpyAV	CCTTC	3 cut(s)	158, 273, 331
HpyCH4III	ACNGT	2 cut(s)	568, 800
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	7 cut(s)	38, 255, 288, 422, 572, 597, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 491, 500
HpyF3I	CTNAG	3 cut(s)	225, 486, 633
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	26, 135, 411, 733
HspAI	GCGC	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	19
KspI	CCGCGG	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	19, 167
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	221, 452, 620
Lsp1109I	GCAGC	6 cut(s)	19, 22, 434, 502, 506, 609
LweI	GCATC	3 cut(s)	304, 553, 719
MaeI	CTAG	2 cut(s)	147, 456
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	21, 169
MboI	GATC	2 cut(s)	19, 167
MboII	GAAGA	8 cut(s)	110, 149, 173, 248, 344, 621, 689, 801
MluCI	AATT	5 cut(s)	177, 296, 429, 592, 767
MlyI	GAGTC	1 cut(s)	431
MroXI	GAANNNNTTC	3 cut(s)	48, 180, 240
MseI	TTAA	2 cut(s)	521, 549
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	232, 779
MvaI	CCWGG	2 cut(s)	232, 779
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	44, 491, 500
NcoI	CCATGG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	2 cut(s)	19, 167
NlaIII	CATG	4 cut(s)	26, 135, 411, 733
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	231
PdmI	GAANNNNTTC	3 cut(s)	48, 180, 240
PfeI	GAWTC	3 cut(s)	26, 525, 646
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	6 cut(s)	34, 37, 424, 496, 517, 599
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	230, 777
PspGI	CCWGG	2 cut(s)	230, 777
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	9, 535
RsaNI	GTAC	2 cut(s)	8, 534
SacII	CCGCGG	1 cut(s)	391
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	521, 549
SatI	GCNGC	6 cut(s)	33, 36, 423, 495, 516, 598
Sau3AI	GATC	2 cut(s)	19, 167
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	232, 779
SfaNI	GCATC	3 cut(s)	304, 553, 719
Sfr274I	CTCGAG	1 cut(s)	53
Sfr303I	CCGCGG	1 cut(s)	391
SgrBI	CCGCGG	1 cut(s)	391
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	177, 296, 429, 592, 767
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	388, 390
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	2 cut(s)	147, 456
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	230, 777
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	568, 800
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	54, 125, 246, 433, 477
TasI	AATT	5 cut(s)	177, 296, 429, 592, 767
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	26, 525, 646
Tru1I	TTAA	2 cut(s)	521, 549
Tru9I	TTAA	2 cut(s)	521, 549
TseI	GCWGC	6 cut(s)	32, 35, 422, 494, 515, 597
TspDTI	ATGAA	2 cut(s)	306, 801
Van91I	CCANNNNNTGG	1 cut(s)	778
XapI	RAATTY	3 cut(s)	177, 429, 767
XhoI	CTCGAG	1 cut(s)	53
XmnI	GAANNNNTTC	3 cut(s)	48, 180, 240
XspI	CTAG	2 cut(s)	147, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.