Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Forward (+)

43874137 .. 43875150

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1306800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCTCCTCTTGATGGGAGAGAAGGGTCAATGGAAGTTCTACAAAGGCTACCAAGTCTAGGTAGGTGGATATCAATGGGAACTGAGGCCTGGGAAAAACTTCTGGACAGTGGTGCTGCTCCTGCACAAAATAGGGAGCAGTCTTGCAATGACAAGTTAGAAGGCAATGGAGCTGCAAATTCGGAATGCGAAGCAAAGGTTGAGAGAGCAAAGAAAGTCGAAATTACGAAGCACTACCGCGGAGTTAGGAGGCGGCCGTGGGGCAAGTATGCAGCCGAGATTAGGGACTCAACAAGGAAAGGAGCTAGGGTTTGGCTTGGGACTTTTGAGACCGCAGAGGATGCCGCTTTGGCTTATGACAAGGCAGCTCTGAGAATTAGAGGCTCAAAAGCACATCTTAACTTCCCCCTTGAAACAGTTGCAAGGGCTATGGGATTGGATTGCTTCAGCATTTGTTCATCCACAAATATCGGTTCAAATCCTCGTAGGAGAAGGTTGAGAGATTGGGAAGAAAATATTGAGGAAAGAAAACCTGCAGTGAAGAGGGAGGCGAGCATGCAAAAGATGTTGGGTGATCATGATGAATTTGATGTATTTGAGTTCCAAGACCTGGGAAGTGACTACTTGGACAGTTTGCTGTCTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

217

Amino Acids

24.4

Weight (kDa)

6.85

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 128	4.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccII	CGCG	1 cut(s)	240
AciI	CCGC	5 cut(s)	238, 240, 253, 333, 345
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	178, 584
AcuI	CTGAAG	1 cut(s)	430
AfiI	CCNNNNNNNGG	4 cut(s)	14, 59, 282, 610
AgsI	TTSAA	2 cut(s)	413, 477
AjnI	CCWGG	2 cut(s)	89, 609
AluBI	AGCT	3 cut(s)	173, 305, 368
AluI	AGCT	3 cut(s)	173, 305, 368
Alw26I	GTCTC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	87, 254
ApeKI	GCWGC	4 cut(s)	116, 173, 272, 365
ApoI	RAATTY	2 cut(s)	178, 584
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	103, 160, 284, 377
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	91, 611
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	59, 306
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	541
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	6 cut(s)	117, 174, 254, 273, 345, 366
BlsI	GCNGC	6 cut(s)	118, 175, 255, 274, 346, 367
Bme1390I	CCNGG	2 cut(s)	91, 611
BmrFI	CCNGG	2 cut(s)	91, 611
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	4 cut(s)	90, 238, 257, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 59, 282, 610
Bse3DI	GCAATG	2 cut(s)	154, 172
BseBI	CCWGG	2 cut(s)	91, 611
BseDI	CCNNGG	4 cut(s)	90, 238, 257, 610
BseGI	GGATG	2 cut(s)	346, 458
BseLI	CCNNNNNNNGG	4 cut(s)	14, 59, 282, 610
BseMI	GCAATG	2 cut(s)	154, 172
BseMII	CTCAG	2 cut(s)	75, 362
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	103, 160, 284, 377
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	89, 256
BsiEI	CGRYCG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	299, 334
BslI	CCNNNNNNNGG	4 cut(s)	14, 59, 282, 610
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	299, 334
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	89, 256
Bso31I	GGTCTC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	5 cut(s)	238, 240, 253, 333, 345
BspANI	GGCC	2 cut(s)	89, 256
BspCNI	CTCAG	2 cut(s)	76, 363
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	154, 172
BssECI	CCNNGG	4 cut(s)	90, 238, 257, 610
BssMI	GATC	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	91, 611
Bst4CI	ACNGT	3 cut(s)	110, 418, 632
Bst6I	CTCTTC	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	553, 557
BstDEI	CTNAG	2 cut(s)	84, 371
BstDSI	CCRYGG	2 cut(s)	238, 257
BstF5I	GGATG	2 cut(s)	346, 458
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	574
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 341, 350
BstNI	CCWGG	2 cut(s)	91, 611
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	89, 609
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	4 cut(s)	103, 160, 284, 377
BstV2I	GAAGAC	1 cut(s)	633
BstZI	CGGCCG	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	89, 256
BtgI	CCRYGG	2 cut(s)	238, 257
BtsCI	GGATG	2 cut(s)	346, 458
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	115, 543
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	553, 557
CciI	TCATGA	1 cut(s)	577
Cfr42I	CCGCGG	1 cut(s)	241
CviAII	CATG	2 cut(s)	556, 578
DdeI	CTNAG	2 cut(s)	84, 371
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	254
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EclXI	CGGCCG	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	89, 609
EcoRV	GATATC	1 cut(s)	72
FaeI	CATG	2 cut(s)	559, 581
FaiI	YATR	5 cut(s)	270, 357, 431, 557, 579
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	2 cut(s)	299, 334
FatI	CATG	2 cut(s)	555, 577
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	6 cut(s)	117, 174, 254, 273, 345, 366
FokI	GGATG	2 cut(s)	353, 445
Fsp4HI	GCNGC	6 cut(s)	117, 174, 254, 273, 345, 366
FspBI	CTAG	2 cut(s)	59, 306
GluI	GCNGC	6 cut(s)	117, 174, 254, 273, 345, 366
HaeIII	GGCC	2 cut(s)	89, 256
Hin1II	CATG	2 cut(s)	559, 581
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	584
Hpy188I	TCNGA	2 cut(s)	184, 372
Hpy188III	TCNNGA	3 cut(s)	11, 104, 578
HpyAV	CCTTC	3 cut(s)	17, 155, 486
HpyCH4III	ACNGT	3 cut(s)	110, 418, 632
HpyCH4V	TGCA	7 cut(s)	125, 147, 176, 272, 422, 536, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 341, 350
HpyF3I	CTNAG	2 cut(s)	84, 371
Hsp92II	CATG	2 cut(s)	559, 581
Ksp22I	TGATCA	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	4 cut(s)	124, 136, 170, 302
LpnPI	CCDG	7 cut(s)	76, 89, 103, 135, 546, 596, 623
Lsp1109I	GCAGC	4 cut(s)	103, 160, 284, 377
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	59, 306
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	521, 553, 633
MluCI	AATT	4 cut(s)	178, 222, 375, 584
MlyI	GAGTC	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	91, 611
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	91, 611
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	122, 341, 350
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	2 cut(s)	559, 581
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	6 cut(s)	118, 175, 255, 274, 346, 367
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	89, 609
PspGI	CCWGG	2 cut(s)	89, 609
PstI	CTGCAG	1 cut(s)	538
SacII	CCGCGG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	6 cut(s)	117, 174, 254, 273, 345, 366
Sau3AI	GATC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	91, 611
SetI	ASST	9 cut(s)	64, 68, 175, 201, 307, 370, 497, 535, 612
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	534
Sfr303I	CCGCGG	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	241
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	4 cut(s)	178, 222, 375, 584
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	238, 240, 253, 333, 345
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	2 cut(s)	59, 306
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	89, 609
TaaI	ACNGT	3 cut(s)	110, 418, 632
TaqI	TCGA	1 cut(s)	219
TasI	AATT	4 cut(s)	178, 222, 375, 584
TauI	GCSGC	2 cut(s)	256, 347
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	115, 543
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	4 cut(s)	116, 173, 272, 365
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	2 cut(s)	447, 597
TspRI	CASTG	2 cut(s)	115, 543
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	178, 584
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	59, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.