Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Reverse (-)

2669616 .. 2670410

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGTACATAGTGATCCTCATGCAGCACAGGTTGCATCTGAAGCTATTCTAGAGAACGTGTGGGCGAGCTTTATCGGTGTGGATGGAGTGAAAGAAGAAGCAAAAAAGACAACAGAGTTGTCTAAACCCTGGAAAGAACTGCCTCCTCTTGATGGGAGAGGAGGGTCAATGGAAATTCTAGAAAGGCTACCAAGTCTAGGTAGGTGGATATCAATGGGAACTGAGGCCTGGGAAGAGCTTCTTGACAGTTGTGTTGTTCCTGGACACAATATGGAGGTGTCAAGCAATGTCAAGTTAGAAGGCAATGGGGCTGCAAACGCAGAATTTGAAGCAAAGGTTGAGAAGAGAAGAGAGAAAGTGGAAATTATGAAGCACTACCGCGGAGTTAGGAGGCGGCCATGGGGTAAGTATGCAGCAGAAATTAGAGACTCAACAAGAAAAGGAGCTAGAGTTTGGCTTGGGACTTTCGAGACTGCAGAGGAGGCAGCTTTGGCTTATGACAAGGCTGCTTTGAGAATCAGAGGCTCAAAAGCCAATCTCAACTTCCCTCTTGAAACAGTTGCAAAGGCTATGGGGTTGGATTGCTTCAACATCTGCTCATCCACAAATGTTTCGAATTCGCGGAAGCGAGCATTGAGGGAGTGGGAAGAAAGTGTTGAGGCAATGACTGATGGAAAACCTGCATTGAAAAGGAAGGCAAGCATGCAAAACATGTTGGGGGATGAATTTGATGTGTTTGAGTTCCAAGACCTGGGAAGTGATTATTTGGACAGTTTGCTGTCTTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

265

Amino Acids

29.43

Weight (kDa)

5.61

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccII	CGCG	2 cut(s)	384, 625
AciI	CCGC	4 cut(s)	382, 384, 397, 625
AclWI	GGATC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	4 cut(s)	177, 326, 619, 728
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	155, 200, 754
AflIII	ACRYGT	2 cut(s)	60, 714
AgsI	TTSAA	4 cut(s)	332, 557, 592, 691
AjnI	CCWGG	4 cut(s)	131, 230, 262, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	5 cut(s)	47, 72, 241, 449, 491
AluI	AGCT	5 cut(s)	47, 72, 241, 449, 491
Alw26I	GTCTC	2 cut(s)	423, 467
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	2 cut(s)	228, 398
ApeKI	GCWGC	5 cut(s)	26, 314, 416, 488, 509
ApoI	RAATTY	4 cut(s)	177, 326, 619, 728
Asp700I	GAANNNNTTC	2 cut(s)	48, 240
AsuII	TTCGAA	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	777
BbvI	GCAGC	5 cut(s)	38, 301, 428, 496, 500
BccI	CCATC	3 cut(s)	80, 149, 668
BciT130I	CCWGG	4 cut(s)	133, 232, 264, 755
BcoDI	GTCTC	2 cut(s)	423, 467
BfaI	CTAG	4 cut(s)	53, 182, 200, 450
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	6 cut(s)	27, 315, 398, 417, 489, 510
BlsI	GCNGC	6 cut(s)	28, 316, 399, 418, 490, 511
Bme1390I	CCNGG	4 cut(s)	133, 232, 264, 755
BmrFI	CCNGG	4 cut(s)	133, 232, 264, 755
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	617
BsaJI	CCNNGG	5 cut(s)	131, 231, 382, 401, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 200, 754
Bse3DI	GCAATG	3 cut(s)	295, 313, 672
BseBI	CCWGG	4 cut(s)	133, 232, 264, 755
BseDI	CCNNGG	5 cut(s)	131, 231, 382, 401, 754
BseGI	GGATG	3 cut(s)	91, 602, 730
BseLI	CCNNNNNNNGG	3 cut(s)	155, 200, 754
BseMI	GCAATG	3 cut(s)	295, 313, 672
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	3 cut(s)	138, 177, 497
BseXI	GCAGC	5 cut(s)	38, 301, 428, 496, 500
Bsh1236I	CGCG	2 cut(s)	384, 625
BshFI	GGCC	2 cut(s)	230, 400
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	3 cut(s)	155, 200, 754
BsmAI	GTCTC	2 cut(s)	423, 467
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	230, 400
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	16
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	4 cut(s)	382, 384, 397, 625
BspANI	GGCC	2 cut(s)	230, 400
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	384, 625
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	295, 313, 672
BsrGI	TGTACA	1 cut(s)	7
BssECI	CCNNGG	5 cut(s)	131, 231, 382, 401, 754
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	4 cut(s)	133, 232, 264, 755
Bst4CI	ACNGT	3 cut(s)	251, 562, 776
Bst6I	CTCTTC	3 cut(s)	231, 341, 346
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	4 cut(s)	70, 633, 703, 707
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	2 cut(s)	382, 401
BstF5I	GGATG	3 cut(s)	91, 602, 730
BstFNI	CGCG	2 cut(s)	384, 625
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	423, 467
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 320, 485, 494
BstNI	CCWGG	4 cut(s)	133, 232, 264, 755
BstNSI	RCATGY	2 cut(s)	709, 718
BstSCI	CCNGG	4 cut(s)	131, 230, 262, 753
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	2 cut(s)	384, 625
BstV1I	GCAGC	5 cut(s)	38, 301, 428, 496, 500
BstV2I	GAAGAC	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	230, 400
BtgI	CCRYGG	2 cut(s)	382, 401
BtsCI	GGATG	3 cut(s)	91, 602, 730
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	4 cut(s)	70, 633, 703, 707
Cfr42I	CCGCGG	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	4 cut(s)	23, 402, 706, 715
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	3 cut(s)	231, 341, 346
EarI	CTCTTC	3 cut(s)	231, 341, 346
Eco130I	CCWWGG	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	4 cut(s)	131, 230, 262, 753
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	26, 405, 709, 718
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	22, 401, 705, 714
Fnu4HI	GCNGC	6 cut(s)	27, 315, 398, 417, 489, 510
FokI	GGATG	3 cut(s)	98, 589, 737
Fsp4HI	GCNGC	6 cut(s)	27, 315, 398, 417, 489, 510
FspBI	CTAG	4 cut(s)	53, 182, 200, 450
GluI	GCNGC	6 cut(s)	27, 315, 398, 417, 489, 510
HaeIII	GGCC	2 cut(s)	230, 400
Hin1II	CATG	4 cut(s)	26, 405, 709, 718
HinfI	GANTC	2 cut(s)	431, 519
Hpy188I	TCNGA	2 cut(s)	43, 524
Hpy188III	TCNNGA	6 cut(s)	53, 152, 182, 245, 472, 554
HpyAV	CCTTC	2 cut(s)	296, 691
HpyCH4III	ACNGT	3 cut(s)	251, 562, 776
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	8 cut(s)	26, 38, 317, 416, 479, 566, 686, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 320, 485, 494
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	26, 405, 709, 718
KspI	CCGCGG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	16
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	5 cut(s)	38, 301, 428, 496, 500
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	4 cut(s)	53, 182, 200, 450
MaeII	ACGT	1 cut(s)	60
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	6 cut(s)	110, 248, 358, 363, 662, 777
MluCI	AATT	6 cut(s)	177, 326, 366, 423, 619, 728
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	561
MroXI	GAANNNNTTC	2 cut(s)	48, 240
MspA1I	CMGCKG	1 cut(s)	384
MspR9I	CCNGG	4 cut(s)	133, 232, 264, 755
MvaI	CCWGG	4 cut(s)	133, 232, 264, 755
MvnI	CGCG	2 cut(s)	384, 625
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 320, 485, 494
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	26, 405, 709, 718
NspI	RCATGY	2 cut(s)	709, 718
NspV	TTCGAA	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	231
PdmI	GAANNNNTTC	2 cut(s)	48, 240
PfeI	GAWTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	754
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	6 cut(s)	28, 316, 399, 418, 490, 511
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PscI	ACATGT	1 cut(s)	714
Psp6I	CCWGG	4 cut(s)	131, 230, 262, 753
PspGI	CCWGG	4 cut(s)	131, 230, 262, 753
PstI	CTGCAG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SacII	CCGCGG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	231
SatI	GCNGC	6 cut(s)	27, 315, 398, 417, 489, 510
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	4 cut(s)	133, 232, 264, 755
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	477
Sfr303I	CCGCGG	1 cut(s)	385
SfuI	TTCGAA	1 cut(s)	617
SgrBI	CCGCGG	1 cut(s)	385
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	6 cut(s)	177, 326, 366, 423, 619, 728
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	4 cut(s)	382, 384, 397, 625
SspMI	CTAG	4 cut(s)	53, 182, 200, 450
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	4 cut(s)	131, 230, 262, 753
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	251, 562, 776
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	471, 617
TasI	AATT	6 cut(s)	177, 326, 366, 423, 619, 728
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	519
TseI	GCWGC	5 cut(s)	26, 314, 416, 488, 509
TspDTI	ATGAA	2 cut(s)	386, 741
Van91I	CCANNNNNTGG	1 cut(s)	754
XapI	RAATTY	4 cut(s)	177, 326, 619, 728
XbaI	TCTAGA	2 cut(s)	52, 181
XceI	RCATGY	2 cut(s)	709, 718
XmnI	GAANNNNTTC	2 cut(s)	48, 240
XspI	CTAG	4 cut(s)	53, 182, 200, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.