Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015404

Physical Location & Seq

Genomic Coordinates Reverse (-)

5911419 .. 5913075

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGTACATAGTGTTAATCATGATTCTGCTGCTGCACCAGAAGCTATTCTCGAGAACGTGTGGGCCAGCTTTATTGGTGTTGATGGAGGGAATCAAGAAACAAGCAACACACCAGAAATGTCGAAATCATGGGAAGAACTGCCTAGTCTTGATGGGAGAGAAGGATCAATGGAAATTCTTCAAAGGCTACCAAGTCTCGGTAGGTGGATGTCAATGGGAGCTGAGGCCTGGGAAGAGCTTCTCGACACTCACATTATTCCTTCTTGTGATATTGAAAAGTCTTGCAATGAAAAATTAGGGGGAAATGAGGATGCCAAACCGGAAGCGGAAGAGAAGGTTGAGAGAGTAGAGAAAGTGGCAACAAAGCATTACCGCGGTGTTAGGAGACGGCCATGGGGAAAATATGCAGCAGAAATTCGAGACTCATCAAGAAAAGGAGCTAGAGTTTGGCTTGGGACTTTCGAGACTGCTGAGGAGGCAGCTCTGGCATATGACAAAGCTGCTTTAAGAATCAGAGGTACAAAAGCGCATCTTAACTTCCCTTTTGAAACAGTTGCAAAGGCTATGGGACTTGAGAATTGCAGCTTCAACAATATTTGTTCCTCCACAACTTCTTCTCAGAATGGTTTGAATCCTCGTAAGAGAGGAGTGAGAGAGTGGGAAGAAAATGTTGAGGTAATGACTGGAGAACCTGCATTAAAAAGAAACGCAAGCATGGAAAAGATGTTCGGAGATGAGTTTGATGTGTTTGAATTCCAAGACCTGGGAACTGATTACTTGGACAGTTTGCTCTCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

29.94

Weight (kDa)

4.95

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 174	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18450
fragaria_vesca	FvH4_4g10480
malus_domestica	MD05G1306800.v1.1 MD10G1286200.v1.1
prunus_persica	Prupe.4G055600_v2.0.a1
pyrus_communis	pycom10g23890
rosa_chinensis	RchiOBHm_Chr5g0009741
rosa_laevigata	RLG00000031690
rosa_multiflora	Rmu_sc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066480
rosa_rugosa	Rorug04G0445400
rosa_samantha	Rh5AG076900 Rh5BG072200 Rh5CG084600 Rh5DG072600
rosa_wichuraiana	Rw5G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccB7I	CCANNNNNTGG	1 cut(s)	766
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	329, 376, 378
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	3 cut(s)	177, 417, 755
AfaI	GTAC	2 cut(s)	9, 523
AfiI	CCNNNNNNNGG	2 cut(s)	200, 766
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	185, 278, 551, 592, 634, 755
AjnI	CCWGG	2 cut(s)	230, 765
AloI	GAACNNNNNNTCC	2 cut(s)	713, 745
AluBI	AGCT	8 cut(s)	47, 72, 224, 241, 443, 485, 503, 588
AluI	AGCT	8 cut(s)	47, 72, 224, 241, 443, 485, 503, 588
Alw26I	GTCTC	4 cut(s)	203, 382, 417, 461
AlwI	GGATC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	66, 228, 392
ApeKI	GCWGC	6 cut(s)	32, 35, 410, 482, 503, 585
ApoI	RAATTY	3 cut(s)	177, 417, 755
Asp700I	GAANNNNTTC	3 cut(s)	48, 180, 240
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	53
BbvCI	CCTCAGC	2 cut(s)	225, 474
BbvI	GCAGC	6 cut(s)	19, 22, 422, 490, 494, 597
BccI	CCATC	2 cut(s)	80, 149
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	232, 767
BcoDI	GTCTC	4 cut(s)	203, 382, 417, 461
BfaI	CTAG	2 cut(s)	147, 444
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	6 cut(s)	33, 36, 411, 483, 504, 586
BlsI	GCNGC	6 cut(s)	34, 37, 412, 484, 505, 587
Bme1390I	CCNGG	2 cut(s)	232, 767
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	232, 767
BmsI	GCATC	2 cut(s)	304, 541
BpmI	CTGGAG	1 cut(s)	708
Bpu10I	CCTNAGC	2 cut(s)	225, 474
BpuEI	CTTGAG	1 cut(s)	596
BsaJI	CCNNGG	4 cut(s)	231, 376, 395, 766
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 766
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	232, 767
BseDI	CCNNGG	4 cut(s)	231, 376, 395, 766
BseGI	GGATG	2 cut(s)	216, 319
BseLI	CCNNNNNNNGG	2 cut(s)	200, 766
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	3 cut(s)	216, 465, 635
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	2 cut(s)	491, 663
BseXI	GCAGC	6 cut(s)	19, 22, 422, 490, 494, 597
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	68, 230, 394
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	2 cut(s)	472, 585
BslI	CCNNNNNNNGG	2 cut(s)	200, 766
BsmAI	GTCTC	4 cut(s)	203, 382, 417, 461
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	472, 585
BsnI	GGCC	3 cut(s)	68, 230, 394
BsoBI	CYCGRG	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	167
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	3 cut(s)	329, 376, 378
BspANI	GGCC	3 cut(s)	68, 230, 394
BspCNI	CTCAG	3 cut(s)	217, 466, 634
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	4 cut(s)	231, 376, 395, 766
BssMI	GATC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	232, 767
Bst4CI	ACNGT	2 cut(s)	556, 788
Bst6I	CTCTTC	3 cut(s)	231, 327, 802
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	70, 715
BstDEI	CTNAG	3 cut(s)	225, 474, 621
BstDSI	CCRYGG	2 cut(s)	376, 395
BstF5I	GGATG	2 cut(s)	216, 319
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	4 cut(s)	203, 382, 417, 461
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 479, 488
BstNI	CCWGG	2 cut(s)	232, 767
BstSCI	CCNGG	2 cut(s)	230, 765
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	6 cut(s)	19, 22, 422, 490, 494, 597
BsuRI	GGCC	3 cut(s)	68, 230, 394
BtgI	CCRYGG	2 cut(s)	376, 395
BtsCI	GGATG	2 cut(s)	216, 319
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	70, 715
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	66
Cfr42I	CCGCGG	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	8, 522
CviAII	CATG	4 cut(s)	23, 132, 396, 718
CviQI	GTAC	2 cut(s)	8, 522
DdeI	CTNAG	3 cut(s)	225, 474, 621
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	3 cut(s)	231, 327, 802
EarI	CTCTTC	3 cut(s)	231, 327, 802
Eco130I	CCWWGG	1 cut(s)	395
Eco147I	AGGCCT	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	230, 765
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	4 cut(s)	26, 135, 399, 721
FaiI	YATR	9 cut(s)	12, 24, 133, 397, 408, 493, 495, 569, 719
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	2 cut(s)	472, 585
FatI	CATG	4 cut(s)	22, 131, 395, 717
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	6 cut(s)	33, 36, 411, 483, 504, 586
FokI	GGATG	2 cut(s)	223, 326
Fsp4HI	GCNGC	6 cut(s)	33, 36, 411, 483, 504, 586
FspBI	CTAG	2 cut(s)	147, 444
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	6 cut(s)	33, 36, 411, 483, 504, 586
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	68, 230, 394
HapII	CCGG	1 cut(s)	323
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	4 cut(s)	26, 135, 399, 721
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	5 cut(s)	26, 94, 425, 513, 634
HpaII	CCGG	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	518, 624, 734
Hpy188III	TCNNGA	9 cut(s)	23, 53, 55, 98, 152, 245, 422, 432, 466
HpyAV	CCTTC	3 cut(s)	158, 273, 331
HpyCH4III	ACNGT	2 cut(s)	556, 788
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	38, 288, 410, 560, 585, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 479, 488
HpyF3I	CTNAG	3 cut(s)	225, 474, 621
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	26, 135, 399, 721
HspAI	GCGC	1 cut(s)	530
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	221, 440
Lsp1109I	GCAGC	6 cut(s)	19, 22, 422, 490, 494, 597
LweI	GCATC	2 cut(s)	304, 541
MaeI	CTAG	2 cut(s)	147, 444
MaeII	ACGT	1 cut(s)	60
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	7 cut(s)	149, 173, 248, 344, 609, 677, 789
MluCI	AATT	5 cut(s)	177, 296, 417, 580, 755
MlyI	GAGTC	1 cut(s)	419
MroXI	GAANNNNTTC	3 cut(s)	48, 180, 240
MseI	TTAA	4 cut(s)	18, 509, 537, 701
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	232, 767
MvaI	CCWGG	2 cut(s)	232, 767
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	44, 479, 488
NcoI	CCATGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	26, 135, 399, 721
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	231
PdmI	GAANNNNTTC	3 cut(s)	48, 180, 240
PfeI	GAWTC	4 cut(s)	26, 94, 513, 634
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	6 cut(s)	34, 37, 412, 484, 505, 587
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	230, 765
PspGI	CCWGG	2 cut(s)	230, 765
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	9, 523
RsaNI	GTAC	2 cut(s)	8, 522
SacII	CCGCGG	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	18, 509, 537, 701
SatI	GCNGC	6 cut(s)	33, 36, 411, 483, 504, 586
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	232, 767
SfaNI	GCATC	2 cut(s)	304, 541
Sfr274I	CTCGAG	1 cut(s)	53
Sfr303I	CCGCGG	1 cut(s)	379
SgrBI	CCGCGG	1 cut(s)	379
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	53, 575
SmoI	CTYRAG	2 cut(s)	53, 575
Sse9I	AATT	5 cut(s)	177, 296, 417, 580, 755
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	3 cut(s)	329, 376, 378
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	147, 444
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	230, 765
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	556, 788
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	54, 125, 246, 421, 465
TasI	AATT	5 cut(s)	177, 296, 417, 580, 755
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	26, 94, 513, 634
Tru1I	TTAA	4 cut(s)	18, 509, 537, 701
Tru9I	TTAA	4 cut(s)	18, 509, 537, 701
TseI	GCWGC	6 cut(s)	32, 35, 410, 482, 503, 585
TspDTI	ATGAA	2 cut(s)	306, 789
Van91I	CCANNNNNTGG	1 cut(s)	766
XapI	RAATTY	3 cut(s)	177, 417, 755
XhoI	CTCGAG	1 cut(s)	53
XmnI	GAANNNNTTC	3 cut(s)	48, 180, 240
XspI	CTAG	2 cut(s)	147, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.