Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013958

Physical Location & Seq

Genomic Coordinates Forward (+)

14538148 .. 14539196

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATTTACGGTCGACATGATATTGGATTTACGATGATATATAATAACAAGACACAAACCCATTGTTTCCAAAAACTACTCGACCAATACCCACCGCAAGAAACAGACCCTTGTCATATATCAAGCTCTCTCTCTCTCTCTCTCTCGATGCCAACCATTTTCTTCAGGGTTTTCCTCATTTACAATCTTGTTCATGCATTCCTTCTCTCTTTGCTACCCAAATCTCTGAGACGACCTCTCCAAAACCAAGCCAAAGTCGACAAACGCAGAAGCAGTGTTGGTGCGGCCAACAAGGTCGAAATGCAGCCGACTGAGCTGAAGCGGGTGTTCCAAGTGTTCGACAGGAACGGTGACGGGCGCATCAGCAAAGAGGAGCTGAGCCATTCGCTCGAGAACTTGGGAATCTTCATCCCTGACCAGGAGCTGTTCAACATGATCCACAAGATCGACGTCGACGGAGACGGGTGCGTCGACATTGACGAGTTCGGGGAGCTTTACCAGTCCATAATGGACGAGCGGGACGACGAGGACGACATGAAGGAGGCGTTCGGGGTTTTCGATCAGAACGGTGACGGCTTCATCACCGTCGACGAGTTGAGGACGGTCTTGTCCTCCCTCGGCCTCAAGCAAGGCAGGTCCATGGAGGACTGCACCAGGATGATTATGAAGGTCGACGTCGACGGAGATGGCATGGTCAATTACAACGAGTTCAGGCAGATGATGAAGGGAGGAGGCTTTGGCGCTTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031302 GO:0031303 GO:0031410 GO:0031982 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

251

Amino Acids

28.5

Weight (kDa)

4.94

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	104 - 167	1.9e-14	EF-hand domain pair
EF-hand_1	PF00036	105 - 130	5.9e-07	EF hand domain
EF-hand_6	PF13405	105 - 134	1.8e-07	EF-hand domain
EF-hand_5	PF13202	106 - 127	6.5e-08	EF hand
EF-hand_7	PF13499	176 - 242	1.8e-14	EF-hand domain pair
EF-hand_6	PF13405	178 - 207	2.7e-08	EF-hand domain
EF-hand_1	PF00036	179 - 206	1.7e-07	EF hand domain
EF-hand_5	PF13202	180 - 203	5.4e-07	EF hand
EF-hand_1	PF00036	217 - 242	3.7e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43290
fragaria_vesca	FvH4_4g10830
malus_domestica	MD04G1041400.v1.1 MD13G1272800.v1.1
prunus_persica	Prupe.1G194800_v2.0.a1
pyrus_communis	pycom04g03640
rosa_chinensis	RchiOBHm_Chr4g0406651
rosa_laevigata	RLG00000008762
rosa_multiflora	Rmu_co8120260.1_g000001 Rmu_sc0002774.1_g000003 Rmu_sc0019587.1_g000005
rosa_roxburghii	Rroxscaffold_5G00351490
rosa_rugosa	Rorug04G0072700
rosa_samantha	Rh4AG140000 Rh4BG136900 Rh4DG134100
rosa_wichuraiana	Rw4G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	467, 607
AatII	GACGTC	2 cut(s)	453, 678
Acc36I	ACCTGC	1 cut(s)	624
AccBSI	CCGCTC	1 cut(s)	517
AccI	GTMKAC	7 cut(s)	13, 258, 453, 471, 588, 672, 678
AciI	CCGC	4 cut(s)	95, 284, 322, 517
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	148, 338
AcyI	GRCGYC	2 cut(s)	450, 675
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	417, 653
AluBI	AGCT	5 cut(s)	126, 316, 376, 424, 493
AluI	AGCT	5 cut(s)	126, 316, 376, 424, 493
Alw26I	GTCTC	2 cut(s)	223, 453
AlwI	GGATC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	285, 619
ApeKI	GCWGC	1 cut(s)	304
AspLEI	GCGC	2 cut(s)	360, 743
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	3 cut(s)	362, 574, 581
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	2 cut(s)	419, 655
BcoDI	GTCTC	2 cut(s)	223, 453
BfoI	RGCGCY	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	624
BisI	GCNGC	2 cut(s)	285, 305
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	286, 306
Bme1390I	CCNGG	2 cut(s)	419, 655
Bme18I	GGWCC	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	419, 655
BmsI	GCATC	2 cut(s)	138, 369
BoxI	GACNNNNGTC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	608
BsaHI	GRCGYC	2 cut(s)	450, 675
BsaJI	CCNNGG	2 cut(s)	616, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	419, 655
BseDI	CCNNGG	2 cut(s)	616, 639
BseGI	GGATG	2 cut(s)	408, 663
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	3 cut(s)	218, 303, 368
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	2 cut(s)	386, 744
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	634
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	287, 621
BsiEI	CGRYCG	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	223, 453
BsmBI	CGTCTC	2 cut(s)	223, 453
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	287, 621
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	3 cut(s)	435, 444, 559
Bsp1720I	GCTNAGC	1 cut(s)	377
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	4 cut(s)	95, 284, 322, 517
BspANI	GGCC	2 cut(s)	287, 621
BspCNI	CTCAG	3 cut(s)	219, 304, 369
BspMI	ACCTGC	1 cut(s)	624
BspPI	GGATC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	616, 639
BssMI	GATC	3 cut(s)	435, 444, 559
BssNI	GRCGYC	2 cut(s)	450, 675
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	419, 655
Bst4CI	ACNGT	5 cut(s)	11, 350, 569, 586, 604
BstACI	GRCGYC	2 cut(s)	450, 675
BstDEI	CTNAG	3 cut(s)	227, 312, 377
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	408, 663
BstH2I	RGCGCY	1 cut(s)	744
BstHHI	GCGC	2 cut(s)	360, 743
BstKTI	GATC	3 cut(s)	438, 447, 562
BstMAI	GTCTC	2 cut(s)	223, 453
BstMBI	GATC	3 cut(s)	435, 444, 559
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	419, 655
BstPAI	GACNNNNGTC	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	417, 653
BstV1I	GCAGC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	287, 621
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	408, 663
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	424
CfoI	GCGC	2 cut(s)	360, 743
Cfr13I	GGNCC	1 cut(s)	636
CseI	GACGC	1 cut(s)	457
CviAII	CATG	6 cut(s)	17, 194, 433, 535, 640, 691
DdeI	CTNAG	3 cut(s)	227, 312, 377
DpnI	GATC	3 cut(s)	437, 446, 561
DpnII	GATC	3 cut(s)	435, 444, 559
DrdI	GACNNNNNNGTC	2 cut(s)	467, 607
DseDI	GACNNNNNNGTC	2 cut(s)	467, 607
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	636
Eco57I	CTGAAG	2 cut(s)	148, 338
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	417, 653
EcoT14I	CCWWGG	1 cut(s)	639
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	2 cut(s)	223, 453
FaeI	CATG	6 cut(s)	20, 197, 436, 538, 643, 694
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	6 cut(s)	16, 193, 432, 534, 639, 690
FauI	CCCGC	2 cut(s)	315, 510
FblI	GTMKAC	7 cut(s)	13, 258, 453, 471, 588, 672, 678
Fnu4HI	GCNGC	2 cut(s)	285, 305
FokI	GGATG	2 cut(s)	395, 670
Fsp4HI	GCNGC	2 cut(s)	285, 305
GlaI	GCGC	2 cut(s)	359, 742
GluI	GCNGC	2 cut(s)	285, 305
HaeII	RGCGCY	1 cut(s)	744
HaeIII	GGCC	2 cut(s)	287, 621
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	360, 743
Hin1I	GRCGYC	2 cut(s)	450, 675
Hin1II	CATG	6 cut(s)	20, 197, 436, 538, 643, 694
Hin6I	GCGC	2 cut(s)	358, 741
HinP1I	GCGC	2 cut(s)	358, 741
HincII	GTYRAC	7 cut(s)	14, 259, 454, 472, 589, 673, 679
HindII	GTYRAC	7 cut(s)	14, 259, 454, 472, 589, 673, 679
HinfI	GANTC	1 cut(s)	402
HphI	GGTGA	3 cut(s)	362, 574, 581
Hpy166II	GTNNAC	7 cut(s)	14, 259, 454, 472, 589, 673, 679
Hpy188I	TCNGA	2 cut(s)	228, 564
Hpy188III	TCNNGA	2 cut(s)	145, 391
Hpy8I	GTNNAC	7 cut(s)	14, 259, 454, 472, 589, 673, 679
HpyAV	CCTTC	4 cut(s)	212, 532, 661, 718
HpyCH4III	ACNGT	5 cut(s)	11, 350, 569, 586, 604
HpyCH4IV	ACGT	2 cut(s)	450, 675
HpyCH4V	TGCA	3 cut(s)	197, 304, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	3 cut(s)	227, 312, 377
HpySE526I	ACGT	2 cut(s)	450, 675
Hsp92I	GRCGYC	2 cut(s)	450, 675
Hsp92II	CATG	6 cut(s)	20, 197, 436, 538, 643, 694
HspAI	GCGC	2 cut(s)	358, 741
Kzo9I	GATC	3 cut(s)	435, 444, 559
LmnI	GCTCC	3 cut(s)	373, 421, 490
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	138, 369
MaeII	ACGT	2 cut(s)	450, 675
MaeIII	GTNAC	2 cut(s)	350, 569
MalI	GATC	3 cut(s)	437, 446, 561
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	3 cut(s)	435, 444, 559
MboII	GAAGA	2 cut(s)	154, 397
MluCI	AATT	1 cut(s)	697
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	419, 655
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	2 cut(s)	419, 655
MwoI	GCNNNNNNNGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	3 cut(s)	435, 444, 559
NlaIII	CATG	6 cut(s)	20, 197, 436, 538, 643, 694
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	350, 569
NsiI	ATGCAT	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	5 cut(s)	468, 477, 519, 528, 555
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	286, 306
PshAI	GACNNNNGTC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	417, 653
PspGI	CCWGG	2 cut(s)	417, 653
PspPI	GGNCC	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	656
SalI	GTCGAC	7 cut(s)	12, 257, 452, 470, 587, 671, 677
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	2 cut(s)	285, 305
Sau3AI	GATC	3 cut(s)	435, 444, 559
Sau96I	GGNCC	1 cut(s)	636
ScrFI	CCNGG	2 cut(s)	419, 655
SfaNI	GCATC	2 cut(s)	138, 369
Sfr274I	CTCGAG	1 cut(s)	389
SgrDI	CGTCGACG	3 cut(s)	452, 587, 677
SinI	GGWCC	1 cut(s)	636
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	389, 623
SmoI	CTYRAG	2 cut(s)	389, 623
Sse9I	AATT	1 cut(s)	697
SsiI	CCGC	4 cut(s)	95, 284, 322, 517
StyD4I	CCNGG	2 cut(s)	417, 653
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	5 cut(s)	11, 350, 569, 586, 604
TaiI	ACGT	2 cut(s)	453, 678
TasI	AATT	1 cut(s)	697
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	350, 569
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	350, 569
TspDTI	ATGAA	6 cut(s)	182, 397, 551, 568, 680, 737
TspGWI	ACGGA	2 cut(s)	471, 696
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	7 cut(s)	13, 258, 453, 471, 588, 672, 678
ZraI	GACGTC	2 cut(s)	451, 676
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.