Prupe.1G194800_v2.0.a1

Calmodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013958
Physical Location & Seq
Forward (+)
18428468 .. 18429235
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G194800.1

Sequence Viewer

Length: 681 bp
ATGCCAACCATTTTCCCAAGGATTTTCCTTATTTACAACCTTCTTAATACATTCCTCCTCTCTTTGGTCCCCAAGAATCTAAGGCCTCTCCTCCCTTCTTCTTGGTTCCCCTGCCAAACCAATCTTGTTGCTACCAATACATCATTACCCCATTTTCCACCATCTTCATCTTCGTCTTCTTTGCCTCTGCCCTTGCCTTTGCCCTGTGGTGCTCCAAAAGTTATTCGAATGGACCCCAATGAGCTAAAACGTGTGTTTCAAATGTTTGATCGCAATGGGGACGGCCGGATCACCAAGCAGGAGTTGAATGACTCTTTGGAGAACTTGGGCATCTTTATCCCGGATAAGGAGCTCTTCAACATGATCCAAAAGATTGACGTAAACGGGGACGGGTGCGTCGACATTGATGAGTTTGGAGAGTTGTACCAGTCTATCATGGATGAGCGCGATGAGGATGAAGACATGAAGGAGGCTTTTAATGTGTTCGATCAAAATGGAGACGGGTTCATCACCGTTGATGAGTTGAGGTCGGTTTTGTCCTCGCTCGGGCTTAAGCAGGGGAGGACTATAGAGGACTGCAAGAGGATGATCATGAAGGTGGATGTGGATGGAGATGGAAGGGTCAACTACAAGGAGTTCAAGCAAATGATGAAGGGAGGTGGGTTTAGCGCATTGAGTTAA

Protein Analysis

227

Amino Acids

25.51

Weight (kDa)

4.73

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013958)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43290
fragaria_vesca FvH4_4g10830
malus_domestica MD04G1041400.v1.1 MD13G1272800.v1.1
prunus_persica Prupe.1G194800_v2.0.a1
pyrus_communis pycom04g03640
rosa_chinensis RchiOBHm_Chr4g0406651
rosa_laevigata RLG00000008762
rosa_multiflora Rmu_co8120260.1_g000001 Rmu_sc0002774.1_g000003 Rmu_sc0019587.1_g000005
rosa_roxburghii Rroxscaffold_5G00351490
rosa_rugosa Rorug04G0072700
rosa_samantha Rh4AG140000 Rh4BG136900 Rh4DG134100
rosa_wichuraiana Rw4G011400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 399
AccII CGCG 1 cut(s) 447
AclWI GGATC 2 cut(s) 296, 358
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 3 cut(s) 64, 346, 546
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 4 cut(s) 260, 307, 358, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 2 cut(s) 244, 352
AluI AGCT 2 cut(s) 244, 352
Alw21I GWGCWC 2 cut(s) 214, 354
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 2 cut(s) 296, 358
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 83, 283
AspLEI GCGC 2 cut(s) 447, 671
AspS9I GGNCC 2 cut(s) 67, 232
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 283, 502
AsuII TTCGAA 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 2 cut(s) 67, 232
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 168, 465
Bbv12I GWGCWC 2 cut(s) 214, 354
BccI CCATC 3 cut(s) 169, 602, 608
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 67, 232
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 2 cut(s) 67, 232
BmiI GGNNCC 3 cut(s) 69, 107, 234
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 168, 465
Bpu14I TTCGAA 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 346, 546
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 5 cut(s) 445, 460, 591, 607, 613
BseLI CCNNNNNNNGG 3 cut(s) 64, 346, 546
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 47, 80
BseX3I CGGCCG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 85, 285
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 214, 354
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 2 cut(s) 286, 341
BslFI GGGAC 3 cut(s) 53, 293, 401
BslI CCNNNNNNNGG 3 cut(s) 64, 346, 546
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 3 cut(s) 53, 293, 401
BsnI GGCC 2 cut(s) 85, 285
BsoBI CYCGRG 1 cut(s) 545
Bsp119I TTCGAA 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 214, 354
Bsp143I GATC 5 cut(s) 268, 288, 363, 487, 588
BspANI GGCC 2 cut(s) 85, 285
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 3 cut(s) 69, 107, 234
BspPI GGATC 2 cut(s) 296, 358
BspQI GCTCTTC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 5 cut(s) 268, 288, 363, 487, 588
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 5 cut(s) 445, 460, 591, 607, 613
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 2 cut(s) 447, 671
BstKTI GATC 5 cut(s) 271, 291, 366, 490, 591
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 5 cut(s) 268, 288, 363, 487, 588
BstMCI CGRYCG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 567
BstUI CGCG 1 cut(s) 447
BstV2I GAAGAC 2 cut(s) 168, 465
BstZI CGGCCG 1 cut(s) 283
BsuRI GGCC 2 cut(s) 85, 285
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 445, 460, 591, 607, 613
CciI TCATGA 1 cut(s) 591
CfoI GCGC 2 cut(s) 447, 671
Cfr13I GGNCC 2 cut(s) 67, 232
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 424
CviAII CATG 4 cut(s) 361, 436, 463, 592
CviJI RGCY 6 cut(s) 85, 244, 285, 352, 473, 550
CviKI_1 RGCY 6 cut(s) 85, 244, 285, 352, 473, 550
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 1 cut(s) 80
DpnI GATC 5 cut(s) 270, 290, 365, 489, 590
DpnII GATC 5 cut(s) 268, 288, 363, 487, 588
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 283
EagI CGGCCG 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 67, 232
Eco52I CGGCCG 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 4 cut(s) 364, 439, 466, 595
FaiI YATR 5 cut(s) 362, 437, 464, 569, 593
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 3 cut(s) 53, 293, 401
FatI CATG 4 cut(s) 360, 435, 462, 591
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 399
FokI GGATG 5 cut(s) 452, 467, 598, 614, 620
FriOI GRGCYC 1 cut(s) 354
GlaI GCGC 2 cut(s) 446, 670
HaeIII GGCC 2 cut(s) 85, 285
HapII CCGG 2 cut(s) 286, 341
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 447, 671
Hin1II CATG 4 cut(s) 364, 439, 466, 595
Hin6I GCGC 2 cut(s) 445, 669
HinP1I GCGC 2 cut(s) 445, 669
HincII GTYRAC 2 cut(s) 400, 625
HindII GTYRAC 2 cut(s) 400, 625
HinfI GANTC 2 cut(s) 76, 311
HpaII CCGG 2 cut(s) 286, 341
HphI GGTGA 2 cut(s) 283, 502
Hpy166II GTNNAC 3 cut(s) 382, 400, 625
Hpy188III TCNNGA 1 cut(s) 592
Hpy8I GTNNAC 3 cut(s) 382, 400, 625
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 6 cut(s) 50, 105, 460, 589, 612, 646
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 2 cut(s) 250, 378
HpyCH4V TGCA 1 cut(s) 579
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 250, 378
Hsp92II CATG 4 cut(s) 364, 439, 466, 595
HspAI GCGC 2 cut(s) 445, 669
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 5 cut(s) 268, 288, 363, 487, 588
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 217, 349
LpnPI CCDG 7 cut(s) 124, 217, 284, 299, 354, 440, 542
LweI GCATC 1 cut(s) 339
MaeII ACGT 2 cut(s) 250, 378
MalI GATC 5 cut(s) 270, 290, 365, 489, 590
MboI GATC 5 cut(s) 268, 288, 363, 487, 588
MboII GAAGA 6 cut(s) 90, 156, 162, 168, 346, 470
MhlI GDGCHC 2 cut(s) 214, 354
MlyI GAGTC 1 cut(s) 305
MseI TTAA 4 cut(s) 45, 477, 552, 679
MslI CAYNNNNRTG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 286, 341
MspR9I CCNGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 447
NciI CCSGG 1 cut(s) 341
NdeII GATC 5 cut(s) 268, 288, 363, 487, 588
NlaIII CATG 4 cut(s) 364, 439, 466, 595
NlaIV GGNNCC 3 cut(s) 69, 107, 234
NspV TTCGAA 1 cut(s) 226
PagI TCATGA 1 cut(s) 591
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 69, 107, 234
PspPI GGNCC 2 cut(s) 67, 232
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 354
SalI GTCGAC 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 4 cut(s) 45, 477, 552, 679
Sau3AI GATC 5 cut(s) 268, 288, 363, 487, 588
Sau96I GGNCC 2 cut(s) 67, 232
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 2 cut(s) 214, 354
SetI ASST 8 cut(s) 42, 246, 253, 354, 381, 530, 600, 661
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 226
SinI GGWCC 2 cut(s) 67, 232
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SseBI AGGCCT 1 cut(s) 85
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 2 cut(s) 253, 381
TaqI TCGA 3 cut(s) 226, 399, 486
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 4 cut(s) 45, 477, 552, 679
Tru9I TTAA 4 cut(s) 45, 477, 552, 679
TspDTI ATGAA 6 cut(s) 156, 471, 479, 496, 608, 665
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 67, 232
XmiI GTMKAC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.