Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8120260.1

Orthogroup ID

OG0013958

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 619

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8120260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

atgccaaccattttggtcaggattttccttatttacaatcttcttaatgcattcctcctctctttggtacccaaaaaactgagacctcttctcccctcatgttggtttcctgacataaaccaaaacgaagccaaagccaaaaccagaaccaaaacaagaaccagtgttgctgacaagaacaagggtcagggtcaggatcaagatcagctgagaatcacaagaatggagccgactgagctgaagcgcgtgttccaaatgttcgaccagaacggcgacgggcgcatcagcagaaaggagctgagcgattcgctggagaacttgggcatcttcatccctgacaaggagctgttcaacatgatccagaagatcgacgtcgacggagacgggtgcgtcgacattgacgagttcggagagctgtaccaatccataatggacgagcggaacgaggaggaagacatgaaggaggcattcaacgttttcgatcagaacggtgatggcttcatcgccgtcgacgagttgaggtccgtcttgtcctccctcggcctcaagcaaggcaagtccatagaggactgcaagaggatgattatgaatgtcgacgtcgatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031302 GO:0031303 GO:0031410 GO:0031982 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

202

Amino Acids

23.12

Weight (kDa)

4.72

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43290
fragaria_vesca	FvH4_4g10830
malus_domestica	MD04G1041400.v1.1 MD13G1272800.v1.1
prunus_persica	Prupe.1G194800_v2.0.a1
pyrus_communis	pycom04g03640
rosa_chinensis	RchiOBHm_Chr4g0406651
rosa_laevigata	RLG00000008762
rosa_multiflora	Rmu_co8120260.1_g000001 Rmu_sc0002774.1_g000003 Rmu_sc0019587.1_g000005
rosa_roxburghii	Rroxscaffold_5G00351490
rosa_rugosa	Rorug04G0072700
rosa_samantha	Rh4AG140000 Rh4BG136900 Rh4DG134100
rosa_wichuraiana	Rw4G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AatII	GACGTC	2 cut(s)	375, 600
Acc65I	GGTACC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	4 cut(s)	375, 393, 510, 594
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	439
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	2 cut(s)	204, 352
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	372, 597
AfaI	GTAC	2 cut(s)	69, 419
AfiI	CCNNNNNNNGG	3 cut(s)	64, 102, 340
AgsI	TTSAA	2 cut(s)	352, 472
AluBI	AGCT	5 cut(s)	208, 238, 298, 346, 415
AluI	AGCT	5 cut(s)	208, 238, 298, 346, 415
Alw26I	GTCTC	2 cut(s)	76, 375
AlwI	GGATC	2 cut(s)	204, 352
AoxI	GGCC	1 cut(s)	541
Asp718I	GGTACC	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	246, 282
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	459
BccI	CCATC	2 cut(s)	488, 596
BceAI	ACGGC	2 cut(s)	286, 491
BcoDI	GTCTC	2 cut(s)	76, 375
BlpI	GCTNAGC	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	69, 228
BmsI	GCATC	2 cut(s)	291, 333
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	372, 597
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 102, 340
Bse1I	ACTGG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	2 cut(s)	330, 585
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	64, 102, 340
BseMII	CTCAG	4 cut(s)	71, 200, 225, 290
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	2 cut(s)	47, 461
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	64, 102, 340
BsmAI	GTCTC	2 cut(s)	76, 375
BsmBI	CGTCTC	1 cut(s)	375
BsmI	GAATGC	2 cut(s)	50, 467
BsnI	GGCC	1 cut(s)	543
Bso31I	GGTCTC	1 cut(s)	76
Bsp143I	GATC	5 cut(s)	196, 202, 357, 366, 481
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	4 cut(s)	72, 201, 226, 291
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	69, 228
BspPI	GGATC	2 cut(s)	204, 352
BspT107I	GGYRCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	5 cut(s)	196, 202, 357, 366, 481
BssNI	GRCGYC	2 cut(s)	372, 597
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	372, 597
BstDEI	CTNAG	4 cut(s)	80, 209, 234, 299
BstF5I	GGATG	2 cut(s)	330, 585
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	246, 282
BstKTI	GATC	5 cut(s)	199, 205, 360, 369, 484
BstMAI	GTCTC	2 cut(s)	76, 375
BstMBI	GATC	5 cut(s)	196, 202, 357, 366, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 279
BstUI	CGCG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	330, 585
BtsIMutI	CAGTG	1 cut(s)	169
CfoI	GCGC	2 cut(s)	246, 282
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	68, 418
CviAII	CATG	3 cut(s)	99, 355, 457
CviQI	GTAC	2 cut(s)	68, 418
DdeI	CTNAG	4 cut(s)	80, 209, 234, 299
DpnI	GATC	5 cut(s)	198, 204, 359, 368, 483
DpnII	GATC	5 cut(s)	196, 202, 357, 366, 481
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	3 cut(s)	102, 358, 460
FaiI	YATR	7 cut(s)	100, 116, 356, 428, 458, 563, 587
FatI	CATG	3 cut(s)	98, 354, 456
FblI	GTMKAC	4 cut(s)	375, 393, 510, 594
FokI	GGATG	2 cut(s)	317, 592
GlaI	GCGC	2 cut(s)	245, 281
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	543
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	246, 282
Hin1I	GRCGYC	2 cut(s)	372, 597
Hin1II	CATG	3 cut(s)	102, 358, 460
Hin6I	GCGC	2 cut(s)	244, 280
HinP1I	GCGC	2 cut(s)	244, 280
HincII	GTYRAC	4 cut(s)	376, 394, 511, 595
HindII	GTYRAC	4 cut(s)	376, 394, 511, 595
HinfI	GANTC	2 cut(s)	213, 305
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	4 cut(s)	376, 394, 511, 595
Hpy188I	TCNGA	2 cut(s)	410, 486
Hpy188III	TCNNGA	5 cut(s)	19, 110, 194, 200, 361
Hpy8I	GTNNAC	4 cut(s)	376, 394, 511, 595
Hpy99I	CGWCG	9 cut(s)	278, 374, 377, 380, 395, 512, 515, 599, 602
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	3 cut(s)	372, 474, 597
HpyCH4V	TGCA	2 cut(s)	50, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 279
HpyF3I	CTNAG	4 cut(s)	80, 209, 234, 299
HpySE526I	ACGT	3 cut(s)	372, 474, 597
Hsp92I	GRCGYC	2 cut(s)	372, 597
Hsp92II	CATG	3 cut(s)	102, 358, 460
HspAI	GCGC	2 cut(s)	244, 280
KpnI	GGTACC	1 cut(s)	71
Kzo9I	GATC	5 cut(s)	196, 202, 357, 366, 481
LmnI	GCTCC	3 cut(s)	226, 295, 343
LweI	GCATC	2 cut(s)	291, 333
MaeII	ACGT	3 cut(s)	372, 474, 597
MalI	GATC	5 cut(s)	198, 204, 359, 368, 483
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	5 cut(s)	196, 202, 357, 366, 481
MboII	GAAGA	5 cut(s)	32, 80, 319, 376, 464
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	208
Mva1269I	GAATGC	2 cut(s)	50, 467
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	235, 279
NdeII	GATC	5 cut(s)	196, 202, 357, 366, 481
NlaIII	CATG	3 cut(s)	102, 358, 460
NlaIV	GGNNCC	2 cut(s)	69, 228
NmeAIII	GCCGAG	1 cut(s)	519
NsiI	ATGCAT	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	4 cut(s)	390, 399, 441, 510
PctI	GAATGC	2 cut(s)	50, 467
PfeI	GAWTC	2 cut(s)	213, 305
Psp1406I	AACGTT	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	69, 228
PspPI	GGNCC	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	69, 419
RsaNI	GTAC	2 cut(s)	68, 418
RseI	CAYNNNNRTG	1 cut(s)	221
SalI	GTCGAC	4 cut(s)	374, 392, 509, 593
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	5 cut(s)	196, 202, 357, 366, 481
Sau96I	GGNCC	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	291, 333
SgrDI	CGTCGACG	2 cut(s)	374, 509
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SsiI	CCGC	1 cut(s)	439
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	3 cut(s)	375, 477, 600
TaqI	TCGA	8 cut(s)	261, 369, 375, 393, 480, 510, 594, 600
TfiI	GAWTC	2 cut(s)	213, 305
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	319, 473, 490, 602
TspGWI	ACGGA	2 cut(s)	393, 514
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	522
XmiI	GTMKAC	4 cut(s)	375, 393, 510, 594
ZraI	GACGTC	2 cut(s)	373, 598
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.