FvH4_4g10890

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015258
Physical Location & Seq
Reverse (-)
14574223 .. 14578314
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10890.t1

Sequence Viewer

Length: 1107 bp
ATGGCAAGAGCTGCGCTTGGCCGAGCATCTTGTATTCTCAAGTCATCTCCTCCCAAACCCGAACTTGTTCTCTCTCGAATTCCAAGGTACTCTTTCTCTCCCGTATCCCATGTTGGTGGGCACAGCTTGCCAAACGTACCAAACCCGTCGTCATTCAGGAACCTGAGCCATGGGTCGGTGAGATTGGTGATATCAGAGGGTAAGCCCAAGTTTGAGACGTATCAAGTTGACCCTCCCAACAAACACAAGTGGTTGACCAAGAAGAGGTTCAAGATTCAGAGCAAGAGGGAGAAGCAGGAGAGGAAAGCAGCCAATAAGAGGGACCCTCGTCGGCTTGGTATCAAGAAGAAACGCCACAAGTTTGCTAATGCTCCTGACGAAAAAATCAAGTACAAGCTTGAAAAGGCCAGAATTAAGGAGGCTTTGCTGATTGAGAGACTTAAGCGGTATGAAATTCCAAAAGTTCAGGGTCCTGTGGTACAACCAAATTATTTGACAGGTGAGGAGCGGTTTTATGTGAAGAAAATGGCCCAAAAGAAGTCAAACTATGCCCCGATTGGCAGACGAGGAATTTTCGGAGGTGTTATTCTCAATATGCATATGCATTGGAAGAAACATGAAACGGTGAAGGTTATTTGCAAGCTGTGTAAGCCTGGCCAAGTACATGAGTTTGCACAAGAAATTGCTAGACTGAGTGGGGGAACCCCAATTCAGATAGTTGGAGATGATACCATAATATTTTATCGAGGAAAGAACTATGTGCAGCCGGAAGTAATGTCACCTGTAGATACTTTATCAAAGAAAAGGGCACTGGAGAAATCCAAATATGAGCAATCTCTTGAGTCTGTGCGGAACTTCATTGCTATTGCTGAGAAGGAATTGGAGCTCTATTACAGGCACAATGCGCTTTATGGTGACCCAAATGATGAAAAATCCATTTCAGTTTTGGATGGTCCTACAAATGAAACCGAGACATCAGAGAAACATAAATTACTAGAAAACCAAACTCTAGACTCTGCTAGTGATTTCTTTTCTAAAGGTCTTCTTGAGACAGAATCAGACTCCTCAGATTCAGAACTGTTTGAAAATTTTGAAGATGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

369

Amino Acids

42.13

Weight (kDa)

9.62

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 165 - 249 3.1e-18 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 508
AciI CCGC 3 cut(s) 445, 508, 850
AcoI YGGCCR 2 cut(s) 19, 655
AcsI RAATTY 4 cut(s) 78, 453, 570, 1087
AfaI GTAC 5 cut(s) 89, 138, 392, 480, 663
AfiI CCNNNNNNNGG 3 cut(s) 175, 264, 318
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 4 cut(s) 271, 401, 1085, 1094
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 5 cut(s) 11, 126, 397, 643, 886
AluI AGCT 5 cut(s) 11, 126, 397, 643, 886
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 4 cut(s) 209, 430, 965, 1043
AoxI GGCC 4 cut(s) 19, 405, 528, 655
ApeKI GCWGC 3 cut(s) 11, 308, 763
ApoI RAATTY 4 cut(s) 78, 453, 570, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 2 cut(s) 66, 266
AspLEI GCGC 2 cut(s) 16, 907
AspS9I GGNCC 4 cut(s) 322, 470, 529, 953
AsuHPI GGTGA 6 cut(s) 190, 199, 512, 637, 771, 926
AvaII GGWCC 3 cut(s) 322, 470, 953
BaeGI GKGCMC 2 cut(s) 123, 811
BalI TGGCCA 1 cut(s) 657
BanII GRGCYC 1 cut(s) 888
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 2 cut(s) 320, 775
BccI CCATC 1 cut(s) 944
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 4 cut(s) 209, 430, 965, 1043
BfaI CTAG 4 cut(s) 687, 995, 1010, 1020
BfmI CTRYAG 1 cut(s) 783
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 3 cut(s) 12, 309, 764
BlsI GCNGC 3 cut(s) 13, 310, 765
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 3 cut(s) 322, 470, 953
BmgT120I GGNCC 4 cut(s) 322, 470, 529, 953
BmiI GGNNCC 5 cut(s) 161, 323, 324, 471, 703
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 1034
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 833
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 23, 860, 1067
BsaJI CCNNGG 2 cut(s) 83, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 264, 318
Bse1I ACTGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 83, 169
BseGI GGATG 1 cut(s) 955
BseLI CCNNNNNNNGG 3 cut(s) 175, 264, 318
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 4 cut(s) 155, 683, 861, 1080
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 3 cut(s) 39, 518, 1054
BseSI GKGCMC 2 cut(s) 123, 811
BseXI GCAGC 2 cut(s) 320, 775
BsgI GTGCAG 1 cut(s) 782
BshFI GGCC 4 cut(s) 21, 407, 530, 657
BsiHKAI GWGCWC 1 cut(s) 888
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 175, 264, 318
BsmAI GTCTC 4 cut(s) 209, 430, 965, 1043
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 4 cut(s) 21, 407, 530, 657
Bsp1286I GDGCHC 3 cut(s) 123, 811, 888
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 3 cut(s) 445, 508, 850
BspANI GGCC 4 cut(s) 21, 407, 530, 657
BspCNI CTCAG 4 cut(s) 156, 684, 862, 1079
BspLI GGNNCC 5 cut(s) 161, 323, 324, 471, 703
BspTI CTTAAG 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 1 cut(s) 816
BssECI CCNNGG 2 cut(s) 83, 169
BssT1I CCWWGG 2 cut(s) 83, 169
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 625, 1080
Bst6I CTCTTC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 440
BstAPI GCANNNNNTGC 2 cut(s) 11, 127
BstC8I GCNNGC 2 cut(s) 128, 641
BstDEI CTNAG 4 cut(s) 164, 692, 870, 1066
BstDSI CCRYGG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 914
BstF5I GGATG 1 cut(s) 955
BstHHI GCGC 2 cut(s) 16, 907
BstMAI GTCTC 4 cut(s) 209, 430, 965, 1043
BstMWI GCNNNNNNNGC 4 cut(s) 11, 127, 649, 904
BstNI CCWGG 1 cut(s) 654
BstPAI GACNNNNGTC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 2 cut(s) 123, 811
BstV1I GCAGC 2 cut(s) 320, 775
BstV2I GAAGAC 1 cut(s) 1034
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 4 cut(s) 21, 407, 530, 657
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 955
BtsIMutI CAGTG 1 cut(s) 809
Cac8I GCNNGC 2 cut(s) 128, 641
CfoI GCGC 2 cut(s) 16, 907
Cfr13I GGNCC 4 cut(s) 322, 470, 529, 953
Csp6I GTAC 5 cut(s) 88, 137, 391, 479, 662
CviAII CATG 4 cut(s) 110, 170, 617, 665
CviQI GTAC 5 cut(s) 88, 137, 391, 479, 662
DdeI CTNAG 4 cut(s) 164, 692, 870, 1066
EaeI YGGCCR 2 cut(s) 19, 655
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 2 cut(s) 83, 169
Eco24I GRGCYC 1 cut(s) 888
Eco32I GATATC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 322, 470, 953
Eco53kI GAGCTC 1 cut(s) 886
Eco91I GGTNACC 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 886
EcoO109I RGGNCCY 2 cut(s) 322, 470
EcoO65I GGTNACC 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 83, 169
EcoT22I ATGCAT 2 cut(s) 600, 606
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 2 cut(s) 83, 169
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 4 cut(s) 113, 173, 620, 668
FalI AAGNNNNNCTT 4 cut(s) 76, 108, 1029, 1061
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 109, 169, 616, 664
FauNDI CATATG 1 cut(s) 600
Fnu4HI GCNGC 3 cut(s) 12, 309, 764
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 3 cut(s) 12, 309, 764
FspBI CTAG 4 cut(s) 687, 995, 1010, 1020
GlaI GCGC 2 cut(s) 15, 906
GluI GCNGC 3 cut(s) 12, 309, 764
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 4 cut(s) 21, 407, 530, 657
HapII CCGG 1 cut(s) 767
HhaI GCGC 2 cut(s) 16, 907
Hin1II CATG 4 cut(s) 113, 173, 620, 668
Hin6I GCGC 2 cut(s) 14, 905
HinP1I GCGC 2 cut(s) 14, 905
HincII GTYRAC 2 cut(s) 229, 255
HindII GTYRAC 2 cut(s) 229, 255
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 6 cut(s) 274, 842, 1013, 1055, 1061, 1070
HpaII CCGG 1 cut(s) 767
HphI GGTGA 6 cut(s) 190, 199, 512, 637, 771, 926
Hpy166II GTNNAC 2 cut(s) 229, 255
Hpy188I TCNGA 8 cut(s) 196, 279, 578, 714, 979, 1060, 1069, 1075
Hpy188III TCNNGA 8 cut(s) 75, 157, 271, 343, 374, 839, 1010, 1046
Hpy8I GTNNAC 2 cut(s) 229, 255
Hpy99I CGWCG 2 cut(s) 151, 333
HpyAV CCTTC 2 cut(s) 622, 868
HpyCH4III ACNGT 2 cut(s) 625, 1080
HpyCH4IV ACGT 2 cut(s) 135, 218
HpyCH4V TGCA 5 cut(s) 598, 604, 639, 674, 763
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 127, 649, 904
HpyF3I CTNAG 4 cut(s) 164, 692, 870, 1066
HpySE526I ACGT 2 cut(s) 135, 218
Hsp92II CATG 4 cut(s) 113, 173, 620, 668
HspAI GCGC 2 cut(s) 14, 905
KflI GGGWCCC 1 cut(s) 322
LmnI GCTCC 3 cut(s) 376, 505, 883
Lsp1109I GCAGC 2 cut(s) 320, 775
LweI GCATC 1 cut(s) 35
MaeI CTAG 4 cut(s) 687, 995, 1010, 1020
MaeII ACGT 2 cut(s) 135, 218
MaeIII GTNAC 2 cut(s) 777, 914
MbiI CCGCTC 1 cut(s) 508
MboII GAAGA 6 cut(s) 274, 358, 532, 622, 1034, 1106
MhlI GDGCHC 3 cut(s) 123, 811, 888
MlsI TGGCCA 1 cut(s) 657
MluNI TGGCCA 1 cut(s) 657
MlyI GAGTC 3 cut(s) 851, 1007, 1055
MmeI TCCRAC 1 cut(s) 700
Mox20I TGGCCA 1 cut(s) 657
Mph1103I ATGCAT 2 cut(s) 600, 606
MroXI GAANNNNTTC 2 cut(s) 66, 266
MscI TGGCCA 1 cut(s) 657
MseI TTAA 2 cut(s) 414, 441
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 657
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 654
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 4 cut(s) 11, 127, 649, 904
NcoI CCATGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 600
NlaIII CATG 4 cut(s) 113, 173, 620, 668
NlaIV GGNNCC 5 cut(s) 161, 323, 324, 471, 703
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 777, 914
NsiI ATGCAT 2 cut(s) 600, 606
PdmI GAANNNNTTC 2 cut(s) 66, 266
PfeI GAWTC 3 cut(s) 274, 1055, 1070
PkrI GCNGC 3 cut(s) 13, 310, 765
PleI GAGTC 3 cut(s) 850, 1007, 1055
PpsI GAGTC 3 cut(s) 850, 1007, 1055
PpuMI RGGWCCY 2 cut(s) 322, 470
PshAI GACNNNNGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 888
Psp5II RGGWCCY 2 cut(s) 322, 470
Psp6I CCWGG 1 cut(s) 652
PspEI GGTNACC 1 cut(s) 914
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 5 cut(s) 161, 323, 324, 471, 703
PspPI GGNCC 4 cut(s) 322, 470, 529, 953
PspPPI RGGWCCY 2 cut(s) 322, 470
RsaI GTAC 5 cut(s) 89, 138, 392, 480, 663
RsaNI GTAC 5 cut(s) 88, 137, 391, 479, 662
RseI CAYNNNNRTG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 414, 441
SatI GCNGC 3 cut(s) 12, 309, 764
Sau96I GGNCC 4 cut(s) 322, 470, 529, 953
SchI GAGTC 3 cut(s) 851, 1007, 1055
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 3 cut(s) 123, 811, 888
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 3 cut(s) 322, 470, 953
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 4 cut(s) 38, 440, 839, 1046
SmoI CTYRAG 4 cut(s) 38, 440, 839, 1046
SsiI CCGC 3 cut(s) 445, 508, 850
SspI AATATT 1 cut(s) 738
SspMI CTAG 4 cut(s) 687, 995, 1010, 1020
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 2 cut(s) 83, 169
TaaI ACNGT 2 cut(s) 625, 1080
TaiI ACGT 2 cut(s) 138, 221
TaqI TCGA 2 cut(s) 76, 745
TatI WGTACW 2 cut(s) 390, 661
TfiI GAWTC 3 cut(s) 274, 1055, 1070
Tru1I TTAA 2 cut(s) 414, 441
Tru9I TTAA 2 cut(s) 414, 441
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 2 cut(s) 777, 914
TseI GCWGC 3 cut(s) 11, 308, 763
Tsp45I GTSAC 2 cut(s) 777, 914
TspDTI ATGAA 5 cut(s) 465, 633, 847, 942, 978
TspRI CASTG 1 cut(s) 816
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 3 cut(s) 322, 470, 953
XapI RAATTY 4 cut(s) 78, 453, 570, 1087
XbaI TCTAGA 1 cut(s) 1009
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XmnI GAANNNNTTC 2 cut(s) 66, 266
XspI CTAG 4 cut(s) 687, 995, 1010, 1020
Zsp2I ATGCAT 2 cut(s) 600, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.