Rorug04G0072100

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015258
Physical Location & Seq
Forward (+)
11051984 .. 11052862
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0072100.1

Sequence Viewer

Length: 879 bp
ATGGCATCACTAGCAACCCATTTCTCAGCGTTCGTGCTTCTCTCCCCGGTGGGCCTCCGCCGCCTGCTCTGCTCCTCCTCCCTGTACCTGAGAAACCCATCTCAGTTCCGCGCCAAAACTTGGTACTTCTCCGACCCCAAATGGAAAAACTTCGATCTCTACTCTCTCATCATCGCCCTCCCCATAGCCTCCTTCTCCGAGATCTTCCTCTTCCTCGCCTTCTCCGGCCACCCCACCTACCACTTCGCCTTCTTCCAGCAGTCCGCCACTATCTTCCTCTTCTGGCTCCTCCTCCTCTTGATCATCTGCCGCGAAAACCTAGACCCTATGCACATCGACGAGGGCTTCGTCTTCGTCTTGGCCGCGATCACGTTCTTCATCGAGTATTCCGTCATCGGAAAAGGTATCTCCGGTTTGGGTGGGACCATGTACGACATGTTGGGTGCACTCACTCTCGCATGTGCCTTTTCTTGCTTGTACTTGTCGTTCCGCCCGTGGTCGTTTTTCGCCGAGTTTTTCTTGTCGTCCGGGTTGGTTTTTAAAGGTACGTGGATGTTGCAGCTAGGGTTGTCATTTTACACTGACACGTTTGGGCTGAAAGGGTGTAAGAAGATGGCTGTGTGGCCCCATAAGTCTGAGAATGCCGAGTTGAAGTGTGATCTTGAGGAGGATGGGTTGAGGGGTTTGGCTGTGATGACATTGTTGTTTATTGGGCATGCAATTGGGGTAATGGTGTTGAGTTTTGTGTTGTTTGGGTGGCTGGCAAGGAACTGGAATTGGCGGAGCGGCGAGGCTAGCGGACCGTTGCTGCAACAGCTGGAATCAGAGCACCAACTTGTGTTGATGCGTGCTACGAGTCAAGAGATTGAGCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

292

Amino Acids

33.1

Weight (kDa)

6.17

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 115 - 251 1.5e-21 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 786
AccII CGCG 3 cut(s) 111, 312, 365
AcoI YGGCCR 2 cut(s) 226, 360
AfaI GTAC 5 cut(s) 86, 125, 431, 479, 547
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 2 cut(s) 435, 585
AgsI TTSAA 1 cut(s) 652
AluBI AGCT 3 cut(s) 562, 817, 871
AluI AGCT 3 cut(s) 562, 817, 871
Alw21I GWGCWC 2 cut(s) 448, 831
Alw44I GTGCAC 1 cut(s) 444
AoxI GGCC 4 cut(s) 52, 226, 360, 623
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 559, 808
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 4 cut(s) 52, 423, 624, 800
AsuC2I CCSGG 2 cut(s) 47, 529
AsuNHI GCTAGC 1 cut(s) 794
AvaII GGWCC 2 cut(s) 423, 800
BaeGI GKGCMC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 448, 831
BbvI GCAGC 2 cut(s) 571, 795
BccI CCATC 3 cut(s) 106, 607, 665
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 2 cut(s) 47, 529
BfaI CTAG 4 cut(s) 11, 320, 563, 795
BglII AGATCT 1 cut(s) 201
BisI GCNGC 6 cut(s) 61, 310, 363, 560, 787, 809
BlsI GCNGC 6 cut(s) 62, 311, 364, 561, 788, 810
Bme1390I CCNGG 2 cut(s) 47, 529
Bme18I GGWCC 2 cut(s) 423, 800
BmgT120I GGNCC 4 cut(s) 52, 423, 624, 800
BmiI GGNNCC 3 cut(s) 287, 424, 626
BmrFI CCNGG 2 cut(s) 47, 529
BmsI GCATC 2 cut(s) 14, 834
BmtI GCTAGC 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 2 cut(s) 47, 529
BsaAI YACGTR 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 45, 494
BsaWI WCCGGW 1 cut(s) 410
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 776
BseDI CCNNGG 2 cut(s) 45, 494
BseGI GGATG 2 cut(s) 558, 676
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 4 cut(s) 39, 80, 116, 627
BseNI ACTGG 1 cut(s) 776
BseRI GAGGAG 6 cut(s) 64, 67, 278, 281, 284, 680
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 2 cut(s) 571, 795
Bsh1236I CGCG 3 cut(s) 111, 312, 365
BshFI GGCC 4 cut(s) 54, 228, 362, 625
BsiHKAI GWGCWC 2 cut(s) 448, 831
BsiSI CCGG 4 cut(s) 47, 225, 411, 528
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 4 cut(s) 54, 228, 362, 625
Bsp1286I GDGCHC 2 cut(s) 448, 831
Bsp143I GATC 5 cut(s) 154, 201, 300, 366, 658
BspANI GGCC 4 cut(s) 54, 228, 362, 625
BspCNI CTCAG 4 cut(s) 38, 81, 115, 628
BspFNI CGCG 3 cut(s) 111, 312, 365
BspLI GGNNCC 3 cut(s) 287, 424, 626
BspOI GCTAGC 1 cut(s) 798
BsrBI CCGCTC 1 cut(s) 786
BsrI ACTGG 1 cut(s) 776
BssECI CCNNGG 2 cut(s) 45, 494
BssMI GATC 5 cut(s) 154, 201, 300, 366, 658
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 2 cut(s) 215, 284
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 5 cut(s) 65, 717, 762, 796, 849
BstDEI CTNAG 4 cut(s) 25, 89, 102, 636
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 2 cut(s) 558, 676
BstFNI CGCG 3 cut(s) 111, 312, 365
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 157, 204, 303, 369, 661
BstMBI GATC 5 cut(s) 154, 201, 300, 366, 658
BstMWI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 795, 814
BstNSI RCATGY 3 cut(s) 439, 462, 719
BstSCI CCNGG 2 cut(s) 45, 527
BstSLI GKGCMC 1 cut(s) 448
BstUI CGCG 3 cut(s) 111, 312, 365
BstV1I GCAGC 2 cut(s) 571, 795
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 4 cut(s) 54, 228, 362, 625
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 558, 676
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 5 cut(s) 65, 717, 762, 796, 849
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 4 cut(s) 52, 423, 624, 800
CpoI CGGWCCG 1 cut(s) 800
Csp6I GTAC 5 cut(s) 85, 124, 430, 478, 546
CspI CGGWCCG 1 cut(s) 800
CviAII CATG 4 cut(s) 427, 436, 459, 716
CviQI GTAC 5 cut(s) 85, 124, 430, 478, 546
DdeI CTNAG 4 cut(s) 25, 89, 102, 636
DpnI GATC 5 cut(s) 156, 203, 302, 368, 660
DpnII GATC 5 cut(s) 154, 201, 300, 366, 658
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 226, 360
Eam1104I CTCTTC 2 cut(s) 215, 284
EarI CTCTTC 2 cut(s) 215, 284
EciI GGCGGA 4 cut(s) 47, 253, 479, 796
Eco47I GGWCC 2 cut(s) 423, 800
FaeI CATG 4 cut(s) 430, 439, 462, 719
FaiI YATR 7 cut(s) 185, 329, 428, 437, 460, 630, 717
FaqI GGGAC 1 cut(s) 436
FatI CATG 4 cut(s) 426, 435, 458, 715
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 61, 310, 363, 560, 787, 809
FokI GGATG 2 cut(s) 565, 683
Fsp4HI GCNGC 6 cut(s) 61, 310, 363, 560, 787, 809
FspBI CTAG 4 cut(s) 11, 320, 563, 795
GlaI GCGC 1 cut(s) 112
GluI GCNGC 6 cut(s) 61, 310, 363, 560, 787, 809
HaeIII GGCC 4 cut(s) 54, 228, 362, 625
HapII CCGG 4 cut(s) 47, 225, 411, 528
HhaI GCGC 1 cut(s) 113
Hin1II CATG 4 cut(s) 430, 439, 462, 719
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 821, 856
HpaII CCGG 4 cut(s) 47, 225, 411, 528
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 133, 199, 398, 637, 826
Hpy188III TCNNGA 3 cut(s) 298, 662, 860
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 3 cut(s) 202, 229, 259
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4IV ACGT 3 cut(s) 371, 548, 587
HpyCH4V TGCA 5 cut(s) 331, 446, 559, 719, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 795, 814
HpyF3I CTNAG 4 cut(s) 25, 89, 102, 636
HpySE526I ACGT 3 cut(s) 371, 548, 587
Hsp92II CATG 4 cut(s) 430, 439, 462, 719
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 5 cut(s) 154, 201, 300, 366, 658
LmnI GCTCC 3 cut(s) 77, 291, 783
Lsp1109I GCAGC 2 cut(s) 571, 795
LweI GCATC 2 cut(s) 14, 834
MaeI CTAG 4 cut(s) 11, 320, 563, 795
MaeII ACGT 3 cut(s) 371, 548, 587
MalI GATC 5 cut(s) 156, 203, 302, 368, 660
MbiI CCGCTC 1 cut(s) 786
MboI GATC 5 cut(s) 154, 201, 300, 366, 658
MboII GAAGA 8 cut(s) 196, 202, 244, 265, 271, 343, 367, 622
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 2 cut(s) 448, 831
MluCI AATT 2 cut(s) 720, 775
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 4 cut(s) 47, 225, 411, 528
MspR9I CCNGG 2 cut(s) 47, 529
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 646
MvnI CGCG 3 cut(s) 111, 312, 365
MwoI GCNNNNNNNGC 5 cut(s) 11, 60, 69, 795, 814
NciI CCSGG 2 cut(s) 47, 529
NdeII GATC 5 cut(s) 154, 201, 300, 366, 658
NheI GCTAGC 1 cut(s) 794
NlaIII CATG 4 cut(s) 430, 439, 462, 719
NlaIV GGNNCC 3 cut(s) 287, 424, 626
NmeAIII GCCGAG 2 cut(s) 535, 670
NspI RCATGY 3 cut(s) 439, 462, 719
PaeI GCATGC 1 cut(s) 719
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 3 cut(s) 345, 387, 491
PctI GAATGC 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 6 cut(s) 62, 311, 364, 561, 788, 810
PleI GAGTC 1 cut(s) 864
PpsI GAGTC 1 cut(s) 864
Ppu21I YACGTR 1 cut(s) 549
PscI ACATGT 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 287, 424, 626
PspPI GGNCC 4 cut(s) 52, 423, 624, 800
PsrI GAACNNNNNNTAC 2 cut(s) 470, 502
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 5 cut(s) 86, 125, 431, 479, 547
RsaNI GTAC 5 cut(s) 85, 124, 430, 478, 546
Rsr2I CGGWCCG 1 cut(s) 800
RsrII CGGWCCG 1 cut(s) 800
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 6 cut(s) 61, 310, 363, 560, 787, 809
Sau3AI GATC 5 cut(s) 154, 201, 300, 366, 658
Sau96I GGNCC 4 cut(s) 52, 423, 624, 800
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 2 cut(s) 47, 529
SduI GDGCHC 2 cut(s) 448, 831
SfaNI GCATC 2 cut(s) 14, 834
SinI GGWCC 2 cut(s) 423, 800
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SphI GCATGC 1 cut(s) 719
Sse9I AATT 2 cut(s) 720, 775
SspMI CTAG 4 cut(s) 11, 320, 563, 795
StyD4I CCNGG 2 cut(s) 45, 527
TaaI ACNGT 1 cut(s) 804
TaiI ACGT 3 cut(s) 374, 551, 590
TaqI TCGA 3 cut(s) 153, 336, 381
TasI AATT 2 cut(s) 720, 775
TatI WGTACW 1 cut(s) 477
TauI GCSGC 4 cut(s) 63, 312, 365, 789
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 1 cut(s) 586
TseI GCWGC 2 cut(s) 559, 808
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 444
VpaK11BI GGWCC 2 cut(s) 423, 800
XceI RCATGY 3 cut(s) 439, 462, 719
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 4 cut(s) 11, 320, 563, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.