Rmu_ssc0000186.1_g000035

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000186.1
OG0015258
Physical Location & Seq
Forward (+)
192905 .. 197711
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000186.1_g000035.1.cds

Sequence Viewer

Length: 1104 bp
atggcaaaagctgctgtgtttcgtctagcgtcttccgttctcaaatcttcgcctcctaaacttggtctctttggaattcgaaggtcgggttttctaagccatgagtacttgcggcggcgcccaaatgtaccaaacccaggctgggttgtcagaaacatgagccatgggtctgtgagtttggtgatatctcaaggtaaacccaaatttgagacgtaccaagttgatcctcctaagaagcacaagtggttgaccaagaagaggttgaagattcagaggaagagggagaagcaggagaggaaagcagcgaacaagagggacccccgccggcttcgcattaaggggaacaagaaaaagtttgctaatgctgaggacaaaatcaagttcaagcttgaaaaggccagagttaaggaggctttgctgattgaaagacttaagcggtatgaaattccaaaagttcagggtcctgtggtacaaccaaattatctgacaggtgaggagcggttttatatgaagaaaatggcccaaaagaagtctaactatgccccaattggcaaacgaggaatttttggaggtgttattcttaatatgcatttgcattggaagaaacatgaaacggtaaaggttatttgcaagccctgcaagcctggccaagtacatgagtatgcacaggaaattgctagactgagtgggggaatcccaattcaggttgttggagatgacaccataatattttatcgaggaaagaactatgtgcaaccggcagtaatgtcacccgtagatactttatcaaaaaaaagggcactggagaaatccaaatatgagcaatcgctggagtctgtgcgacacttcattgctattgctgagaaggaattggagctctattacaggcacattgcgctttatggaaacccaaatgatggaaatcccatttcagttttggatggtcctacaaaagaaactgaggcatcagagaaacataaaatactagaaaaccaaattctagactctgctagtgatttcttttctgcaggtcttcttgagactgaatcagactcatcagattcagagctgttaaaagctgatgattttgaagatcacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

367

Amino Acids

42.01

Weight (kDa)

9.87

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1019
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 5 cut(s) 112, 115, 322, 436, 499
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 5 cut(s) 75, 203, 444, 561, 996
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 5 cut(s) 107, 129, 215, 471, 654
AfiI CCNNNNNNNGG 6 cut(s) 62, 137, 142, 258, 703, 917
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 5 cut(s) 265, 385, 392, 425, 1091
AjnI CCWGG 2 cut(s) 136, 643
AluBI AGCT 5 cut(s) 11, 388, 877, 1069, 1079
AluI AGCT 5 cut(s) 11, 388, 877, 1069, 1079
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 3 cut(s) 71, 203, 1034
AlwI GGATC 1 cut(s) 218
AoxI GGCC 3 cut(s) 396, 519, 646
ApeKI GCWGC 2 cut(s) 11, 302
ApoI RAATTY 5 cut(s) 75, 203, 444, 561, 996
AspLEI GCGC 2 cut(s) 120, 898
AspS9I GGNCC 4 cut(s) 316, 461, 520, 944
AsuHPI GGTGA 3 cut(s) 193, 503, 762
AsuII TTCGAA 1 cut(s) 79
AvaII GGWCC 3 cut(s) 316, 461, 944
BaeGI GKGCMC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 879
BbsI GAAGAC 2 cut(s) 24, 1025
Bbv12I GWGCWC 1 cut(s) 879
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 911, 935
BciT130I CCWGG 2 cut(s) 138, 645
BcoDI GTCTC 3 cut(s) 71, 203, 1034
BfaI CTAG 5 cut(s) 26, 678, 986, 1001, 1011
BfmI CTRYAG 1 cut(s) 1026
BfoI RGCGCY 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 1019
BisI GCNGC 4 cut(s) 12, 113, 116, 303
BlsI GCNGC 4 cut(s) 13, 114, 117, 304
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 138, 645
Bme18I GGWCC 3 cut(s) 316, 461, 944
BmgT120I GGNCC 4 cut(s) 316, 461, 520, 944
BmiI GGNNCC 4 cut(s) 119, 317, 318, 462
BmrFI CCNGG 2 cut(s) 138, 645
BmsI GCATC 1 cut(s) 974
BpiI GAAGAC 2 cut(s) 24, 1025
BpmI CTGGAG 2 cut(s) 824, 851
Bpu10I CCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 174, 1058
BsaBI GATNNNNATC 1 cut(s) 921
BsaHI GRCGYC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 136, 163
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 137, 142, 258, 703, 917
Bse118I RCCGGY 2 cut(s) 324, 757
Bse1I ACTGG 1 cut(s) 807
Bse3DI GCAATG 2 cut(s) 849, 891
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 2 cut(s) 138, 645
BseDI CCNNGG 2 cut(s) 136, 163
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 6 cut(s) 62, 137, 142, 258, 703, 917
BseMI GCAATG 2 cut(s) 849, 891
BseMII CTCAG 4 cut(s) 357, 674, 852, 951
BseNI ACTGG 1 cut(s) 807
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 3 cut(s) 398, 521, 648
BshNI GGYRCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 879
BsiSI CCGG 2 cut(s) 325, 758
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 6 cut(s) 62, 137, 142, 258, 703, 917
BsmAI GTCTC 3 cut(s) 71, 203, 1034
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 3 cut(s) 398, 521, 648
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 802, 879
Bsp143I GATC 2 cut(s) 223, 1093
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 5 cut(s) 112, 115, 322, 436, 499
BspANI GGCC 3 cut(s) 398, 521, 648
BspCNI CTCAG 4 cut(s) 358, 675, 853, 952
BspLI GGNNCC 4 cut(s) 119, 317, 318, 462
BspMAI CTGCAG 1 cut(s) 1030
BspMI ACCTGC 1 cut(s) 1019
BspPI GGATC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 499
BsrDI GCAATG 2 cut(s) 849, 891
BsrFI RCCGGY 2 cut(s) 324, 757
BsrI ACTGG 1 cut(s) 807
BssAI RCCGGY 2 cut(s) 324, 757
BssECI CCNNGG 2 cut(s) 136, 163
BssMI GATC 2 cut(s) 223, 1093
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 138, 645
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 251, 272
BstACI GRCGYC 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 431
BstAPI GCANNNNNTGC 2 cut(s) 11, 636
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 326, 632, 641
BstDEI CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 946
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 898
BstKTI GATC 2 cut(s) 226, 1096
BstMAI GTCTC 3 cut(s) 71, 203, 1034
BstMBI GATC 2 cut(s) 223, 1093
BstMWI GCNNNNNNNGC 6 cut(s) 11, 330, 636, 640, 645, 895
BstNI CCWGG 2 cut(s) 138, 645
BstSCI CCNGG 2 cut(s) 136, 643
BstSFI CTRYAG 1 cut(s) 1026
BstSLI GKGCMC 1 cut(s) 802
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 2 cut(s) 24, 1025
BsuRI GGCC 3 cut(s) 398, 521, 648
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 800
BveI ACCTGC 1 cut(s) 1019
Cac8I GCNNGC 3 cut(s) 326, 632, 641
CfoI GCGC 2 cut(s) 120, 898
Cfr10I RCCGGY 2 cut(s) 324, 757
Cfr13I GGNCC 4 cut(s) 316, 461, 520, 944
CseI GACGC 1 cut(s) 18
Csp6I GTAC 5 cut(s) 106, 128, 214, 470, 653
CviAII CATG 5 cut(s) 101, 157, 164, 608, 656
CviQI GTAC 5 cut(s) 106, 128, 214, 470, 653
DdeI CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
DinI GGCGCC 1 cut(s) 119
DpnI GATC 2 cut(s) 225, 1095
DpnII GATC 2 cut(s) 223, 1093
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 2 cut(s) 251, 272
EarI CTCTTC 2 cut(s) 251, 272
Ecl136II GAGCTC 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 879
Eco31I GGTCTC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 3 cut(s) 316, 461, 944
Eco53kI GAGCTC 1 cut(s) 877
EcoICRI GAGCTC 1 cut(s) 877
EcoO109I RGGNCCY 2 cut(s) 316, 461
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 136, 643
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 879
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 104, 160, 167, 611, 659
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 100, 156, 163, 607, 655
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 4 cut(s) 12, 113, 116, 303
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 4 cut(s) 12, 113, 116, 303
FspBI CTAG 5 cut(s) 26, 678, 986, 1001, 1011
GlaI GCGC 2 cut(s) 119, 897
GluI GCNGC 4 cut(s) 12, 113, 116, 303
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 2 cut(s) 824, 851
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 3 cut(s) 398, 521, 648
HapII CCGG 2 cut(s) 325, 758
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 120, 898
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 5 cut(s) 104, 160, 167, 611, 659
Hin6I GCGC 2 cut(s) 118, 896
HinP1I GCGC 2 cut(s) 118, 896
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 7 cut(s) 268, 693, 833, 1004, 1046, 1052, 1061
HpaII CCGG 2 cut(s) 325, 758
HphI GGTGA 3 cut(s) 193, 503, 762
Hpy166II GTNNAC 2 cut(s) 197, 249
Hpy188I TCNGA 7 cut(s) 152, 273, 486, 970, 1051, 1060, 1066
Hpy188III TCNNGA 2 cut(s) 1001, 1037
Hpy8I GTNNAC 2 cut(s) 197, 249
HpyAV CCTTC 2 cut(s) 75, 859
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 7 cut(s) 589, 595, 630, 639, 665, 754, 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 330, 636, 640, 645, 895
HpyF3I CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 5 cut(s) 104, 160, 167, 611, 659
HspAI GCGC 2 cut(s) 118, 896
KasI GGCGCC 1 cut(s) 117
KflI GGGWCCC 1 cut(s) 316
KroI GCCGGC 1 cut(s) 324
KroNI GCCGGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 223, 1093
LmnI GCTCC 2 cut(s) 496, 874
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 974
MaeI CTAG 5 cut(s) 26, 678, 986, 1001, 1011
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 768
MalI GATC 2 cut(s) 225, 1095
MbiI CCGCTC 1 cut(s) 499
MboI GATC 2 cut(s) 223, 1093
MboII GAAGA 9 cut(s) 24, 39, 268, 277, 289, 523, 613, 1025, 1103
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 802, 879
MlsI TGGCCA 1 cut(s) 648
MluNI TGGCCA 1 cut(s) 648
Mly113I GGCGCC 1 cut(s) 118
MlyI GAGTC 3 cut(s) 842, 998, 1046
MmeI TCCRAC 1 cut(s) 691
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 1 cut(s) 591
MroNI GCCGGC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 648
MseI TTAA 5 cut(s) 336, 405, 432, 582, 1073
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 2 cut(s) 325, 758
MspR9I CCNGG 2 cut(s) 138, 645
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 2 cut(s) 138, 645
MwoI GCNNNNNNNGC 6 cut(s) 11, 330, 636, 640, 645, 895
NaeI GCCGGC 1 cut(s) 326
NarI GGCGCC 1 cut(s) 118
NcoI CCATGG 1 cut(s) 163
NdeII GATC 2 cut(s) 223, 1093
NgoMIV GCCGGC 1 cut(s) 324
NlaIII CATG 5 cut(s) 104, 160, 167, 611, 659
NlaIV GGNNCC 4 cut(s) 119, 317, 318, 462
NmuCI GTSAC 1 cut(s) 768
NsiI ATGCAT 1 cut(s) 591
NspV TTCGAA 1 cut(s) 79
PdiI GCCGGC 1 cut(s) 326
PfeI GAWTC 4 cut(s) 268, 693, 1046, 1061
PflMI CCANNNNNTGG 1 cut(s) 917
PkrI GCNGC 4 cut(s) 13, 114, 117, 304
PleI GAGTC 3 cut(s) 841, 998, 1046
PluTI GGCGCC 1 cut(s) 121
PpsI GAGTC 3 cut(s) 841, 998, 1046
PpuMI RGGWCCY 2 cut(s) 316, 461
Psp124BI GAGCTC 1 cut(s) 879
Psp5II RGGWCCY 2 cut(s) 316, 461
Psp6I CCWGG 2 cut(s) 136, 643
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 136, 643
PspN4I GGNNCC 4 cut(s) 119, 317, 318, 462
PspPI GGNCC 4 cut(s) 316, 461, 520, 944
PspPPI RGGWCCY 2 cut(s) 316, 461
PstI CTGCAG 1 cut(s) 1030
RsaI GTAC 5 cut(s) 107, 129, 215, 471, 654
RsaNI GTAC 5 cut(s) 106, 128, 214, 470, 653
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 879
SaqAI TTAA 5 cut(s) 336, 405, 432, 582, 1073
SatI GCNGC 4 cut(s) 12, 113, 116, 303
Sau3AI GATC 2 cut(s) 223, 1093
Sau96I GGNCC 4 cut(s) 316, 461, 520, 944
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 3 cut(s) 842, 998, 1046
ScrFI CCNGG 2 cut(s) 138, 645
SduI GDGCHC 2 cut(s) 802, 879
SfaNI GCATC 1 cut(s) 974
SfcI CTRYAG 1 cut(s) 1026
SfoI GGCGCC 1 cut(s) 119
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 3 cut(s) 316, 461, 944
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 3 cut(s) 189, 431, 1037
SmoI CTYRAG 3 cut(s) 189, 431, 1037
SsiI CCGC 5 cut(s) 112, 115, 322, 436, 499
SspDI GGCGCC 1 cut(s) 117
SspI AATATT 1 cut(s) 729
SspMI CTAG 5 cut(s) 26, 678, 986, 1001, 1011
SstI GAGCTC 1 cut(s) 879
StyD4I CCNGG 2 cut(s) 136, 643
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 79, 736
TatI WGTACW 2 cut(s) 105, 652
TauI GCSGC 2 cut(s) 115, 118
TfiI GAWTC 4 cut(s) 268, 693, 1046, 1061
Tru1I TTAA 5 cut(s) 336, 405, 432, 582, 1073
Tru9I TTAA 5 cut(s) 336, 405, 432, 582, 1073
TscAI CASTG 1 cut(s) 807
TseFI GTSAC 1 cut(s) 768
TseI GCWGC 2 cut(s) 11, 302
Tsp45I GTSAC 1 cut(s) 768
TspDTI ATGAA 4 cut(s) 456, 524, 624, 838
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 1 cut(s) 807
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 3 cut(s) 316, 461, 944
XapI RAATTY 5 cut(s) 75, 203, 444, 561, 996
XbaI TCTAGA 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 934
XspI CTAG 5 cut(s) 26, 678, 986, 1001, 1011
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.