pycom13g28110

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015258
Physical Location & Seq
Reverse (-)
24097319 .. 24099223
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28110.2

Sequence Viewer

Length: 546 bp
ATGGCAAGAGCTGTGGTTTCTGTCGCTGTTTGCAGAGCTGCTTTGGTTCTCAAATCGTCGCCTTCCCAACCTATCTTTCTAAGGTCAGGTTTTCCAACCCAAGAACCAATTTTCATTGCAACAAAACACTTGCCTCTCCCAAACCCATCATGGGTTCTCCGAAATTTGAGCCACGGGTGGGTGAATTTGGTGATATCACATGGGAAACCCAGGTTCGAGATGCACGAAATCGATCCACCAAAAAAGAAGTGGCTGACCAAGAAGAGGTTGAAGCAGCATAGAGTGAGAGAGAAGCAGGAGAGAAGAGCCGCCAATAGGAAGGACCCACGTCGGCTCGGAGTTTCGAAGAAGAAAAGGCTGAAGTTTGCAAATGCTGAGGAGAGAATCAAATACAAGCTTGAAAAGGCTAGAATAAAGGAAGCTTTGCTGATCGAAAGACTTAAGAGGTATGAAATTCCAAACGTCCAGGGTCCTGATGTACAACCAGATGACCTGACAGGCGAGGAGCGTTTTTATATGGAGAAAAATGGCTCAAAAGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

182

Amino Acids

21.12

Weight (kDa)

10.45

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 309
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 3 cut(s) 163, 184, 453
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 4 cut(s) 151, 178, 264, 315
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 271, 401
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 2 cut(s) 209, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 4 cut(s) 11, 38, 397, 422
AluI AGCT 4 cut(s) 11, 38, 397, 422
AlwI GGATC 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 38, 274
ApoI RAATTY 3 cut(s) 163, 184, 453
AspS9I GGNCC 2 cut(s) 322, 470
AsuHPI GGTGA 2 cut(s) 193, 202
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 2 cut(s) 322, 470
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 25, 286
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 2 cut(s) 211, 467
BfaI CTAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 3 cut(s) 39, 275, 309
BlsI GCNGC 3 cut(s) 40, 276, 310
Bme1390I CCNGG 2 cut(s) 211, 467
Bme18I GGWCC 2 cut(s) 322, 470
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 322, 470
BmiI GGNNCC 2 cut(s) 324, 471
BmrFI CCNGG 2 cut(s) 211, 467
BmsI GCATC 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 172, 209, 466
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 178, 264, 315
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 211, 467
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 172, 209, 466
BseLI CCNNNNNNNGG 4 cut(s) 151, 178, 264, 315
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 2 cut(s) 392, 518
BseXI GCAGC 2 cut(s) 25, 286
BshVI ATCGAT 1 cut(s) 231
BslI CCNNNNNNNGG 4 cut(s) 151, 178, 264, 315
Bsp119I TTCGAA 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 2 cut(s) 232, 429
BspACI CCGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 367
BspDI ATCGAT 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 324, 471
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 114
BsrGI TGTACA 1 cut(s) 478
BssECI CCNNGG 3 cut(s) 172, 209, 466
BssMI GATC 2 cut(s) 232, 429
Bst2UI CCWGG 2 cut(s) 211, 467
Bst6I CTCTTC 2 cut(s) 257, 298
BstAFI CTTAAG 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 478
BstBI TTCGAA 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 80, 375
BstDSI CCRYGG 1 cut(s) 172
BstKTI GATC 2 cut(s) 235, 432
BstMBI GATC 2 cut(s) 232, 429
BstNI CCWGG 2 cut(s) 211, 467
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 209, 465
BstV1I GCAGC 2 cut(s) 25, 286
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 322, 470
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 479
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 2 cut(s) 150, 200
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 2 cut(s) 80, 375
DpnI GATC 2 cut(s) 234, 431
DpnII GATC 2 cut(s) 232, 429
Eam1104I CTCTTC 2 cut(s) 257, 298
EarI CTCTTC 2 cut(s) 257, 298
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 322, 470
Eco57I CTGAAG 1 cut(s) 380
EcoO109I RGGNCCY 2 cut(s) 322, 470
EcoRII CCWGG 2 cut(s) 209, 465
EcoRV GATATC 1 cut(s) 195
FaeI CATG 2 cut(s) 153, 203
FaiI YATR 6 cut(s) 151, 201, 279, 450, 516, 518
FatI CATG 2 cut(s) 149, 199
Fnu4HI GCNGC 3 cut(s) 39, 275, 309
Fsp4HI GCNGC 3 cut(s) 39, 275, 309
FspBI CTAG 1 cut(s) 408
GluI GCNGC 3 cut(s) 39, 275, 309
Hin1II CATG 2 cut(s) 153, 203
HindIII AAGCTT 2 cut(s) 395, 420
HinfI GANTC 1 cut(s) 384
HphI GGTGA 2 cut(s) 193, 202
Hpy188I TCNGA 2 cut(s) 161, 338
Hpy188III TCNNGA 2 cut(s) 217, 473
Hpy99I CGWCG 2 cut(s) 61, 333
HpyAV CCTTC 2 cut(s) 72, 313
HpyCH4IV ACGT 2 cut(s) 328, 462
HpyCH4V TGCA 4 cut(s) 33, 119, 223, 368
HpyF3I CTNAG 2 cut(s) 80, 375
HpySE526I ACGT 2 cut(s) 328, 462
Hsp92II CATG 2 cut(s) 153, 203
Kzo9I GATC 2 cut(s) 232, 429
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 2 cut(s) 25, 286
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 328, 462
MalI GATC 2 cut(s) 234, 431
MboI GATC 2 cut(s) 232, 429
MboII GAAGA 4 cut(s) 274, 315, 358, 361
MluCI AATT 4 cut(s) 108, 163, 184, 453
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 144, 258, 370, 438, 496
MseI TTAA 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 211, 467
MvaI CCWGG 2 cut(s) 211, 467
NdeII GATC 2 cut(s) 232, 429
NlaIII CATG 2 cut(s) 153, 203
NlaIV GGNNCC 2 cut(s) 324, 471
NspV TTCGAA 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 3 cut(s) 40, 276, 310
PpuMI RGGWCCY 2 cut(s) 322, 470
PshAI GACNNNNGTC 1 cut(s) 327
Psp5II RGGWCCY 2 cut(s) 322, 470
Psp6I CCWGG 2 cut(s) 209, 465
PspGI CCWGG 2 cut(s) 209, 465
PspN4I GGNNCC 2 cut(s) 324, 471
PspPI GGNCC 2 cut(s) 322, 470
PspPPI RGGWCCY 2 cut(s) 322, 470
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 39, 275, 309
Sau3AI GATC 2 cut(s) 232, 429
Sau96I GGNCC 2 cut(s) 322, 470
ScrFI CCNGG 2 cut(s) 211, 467
SfaNI GCATC 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 2 cut(s) 322, 470
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 108, 163, 184, 453
SsiI CCGC 1 cut(s) 309
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 209, 465
TaiI ACGT 2 cut(s) 331, 465
TaqI TCGA 4 cut(s) 216, 231, 344, 432
TasI AATT 4 cut(s) 108, 163, 184, 453
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseI GCWGC 2 cut(s) 38, 274
TspDTI ATGAA 2 cut(s) 103, 465
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 322, 470
XapI RAATTY 3 cut(s) 163, 184, 453
XcmI CCANNNNNNNNNTGG 2 cut(s) 147, 246
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.