Prupe.1G196500_v2.0.a1

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015258
Physical Location & Seq
Forward (+)
18755482 .. 18762393
6912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G196500.1

Sequence Viewer

Length: 1254 bp
ATGGCAAGAGCTGTGTTTGGTATTGCTGTTCGTAGAGCTTCTTCGATTCTCAAATCGTCACCTTCCAAACCTCTCTTCCTAAGGTCAGGTTTTCCAACCCAAGAACCAATTTTCTTTCCAGCCGAACACTTGCCTCTGCCAAACCCACCAAACTCATCATGGGTTTTCAGAAACTTGAGCCATGGAACGGTGAATTTGGTTATATCACAAGGGAAACCCAAGTTTGAGATGCACGAGATCGATCCTCCGAAAAAGGAGAAGTGGAAGACCAAGAAGAGGTTTAAGCTACAGAGAATGAGAGAGAAGCAGGAGAGAAAAGCGGCCAATAGGAAGGACCCACGTCGGCTCGGCATCAAGAGGAAGAAAAGGCAGAAGTTTGCCACTGCTGACGAGAGGATCAAGTACAAGCTTGAAAAGGCTAGAATAAAGGAAGCTTTGCTGATTGAAAGACTTAAGAGGTATGAAGTTCCAAAAGTTCAGGGTCCTGAAGTAAAACCAGATGACTTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCCCAAAAGAAGTCTAATTATGCACCAATTGGCAAACGAGGAATTTTCGGAGGTGTTATTCTTAACATGCATATGCATTGGAAGAAACATGAAACCGTCAAGGTGATTTGCAAGCCGTGTAAACCTGGACAAGTACATGAATATGCCCAGGAAATTGCCAGACTGAGTGGTGGGATCCCAATTCAAATAGTTGGAGATGACACCATAGTATTTTATCGAGGAAAGAACTATGTGCAGCCAAAAGTTATGTCACCTGTAAATACTTTGTCCAAGAAAAAGGCACTGGAAAAGTTTAAGTACGAGCAATCTCTCGAGTCTGTGCGGCACTTCATTGCTATTGCAGAGAAAGAATTGGAGCTCTACTACAGGCATATTGCACTTTACGGTGACCCAAATGACAGAAATCCCTTGTCAATCTTGGATAGTCCAACAGAAGAGACCAAGGAATCAGGGAACCTTAAAATACTTGGAAAGCAAAAACTTGATTCCACTAGTGATTTCTTTTCCGCGGGTCTCTCAGGGACAGAAGCAGATTCTTCAAACTCTGAGCTATCAGAAACTGATGGTTCTGAACATGACAACTTATCACTAAGTGAATCAGATTCTGAAGATGACAAGATATATAGTTCTGATGATGAAGCATGCACCTCGAAGACGCAACTGTTTGATTTTAAGCATGAGAGATTGGAACGTAGACGAGAAAATTTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

418

Amino Acids

47.96

Weight (kDa)

9.59

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 1234
AccII CGCG 1 cut(s) 1049
AciI CCGC 5 cut(s) 320, 520, 862, 1047, 1049
AclWI GGATC 4 cut(s) 236, 404, 709, 722
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 3 cut(s) 193, 582, 1243
AcuI CTGAAG 2 cut(s) 507, 1167
AdeI CACNNNGTG 1 cut(s) 1133
AfaI GTAC 3 cut(s) 404, 675, 839
AfiI CCNNNNNNNGG 2 cut(s) 187, 276
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 4 cut(s) 413, 446, 725, 1080
AhlI ACTAGT 1 cut(s) 1031
AjiI CACGTC 1 cut(s) 341
AjnI CCWGG 2 cut(s) 664, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 7 cut(s) 11, 38, 286, 409, 434, 898, 1090
AluI AGCT 7 cut(s) 11, 38, 286, 409, 434, 898, 1090
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 2 cut(s) 971, 1058
AlwI GGATC 4 cut(s) 236, 404, 709, 722
AlwNI CAGNNNCTG 2 cut(s) 1100, 1145
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 2 cut(s) 321, 540
ApeKI GCWGC 1 cut(s) 775
ApoI RAATTY 3 cut(s) 193, 582, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 773, 805
AspS9I GGNCC 3 cut(s) 334, 482, 541
AsuHPI GGTGA 6 cut(s) 51, 202, 524, 655, 783, 938
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 2 cut(s) 334, 482
AxyI CCTNAGG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 714
BanII GRGCYC 1 cut(s) 900
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 272, 1199
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 1 cut(s) 787
BccI CCATC 1 cut(s) 1097
BceAI ACGGC 1 cut(s) 640
BcgI CGANNNNNNTGC 2 cut(s) 1170, 1204
BciT130I CCWGG 2 cut(s) 666, 689
BcoDI GTCTC 2 cut(s) 971, 1058
BcuI ACTAGT 1 cut(s) 1031
BfaI CTAG 2 cut(s) 420, 1032
BfmI CTRYAG 2 cut(s) 287, 904
BfrI CTTAAG 1 cut(s) 452
BisI GCNGC 3 cut(s) 321, 776, 863
BlsI GCNGC 3 cut(s) 322, 777, 864
Bme1390I CCNGG 2 cut(s) 666, 689
Bme18I GGWCC 2 cut(s) 334, 482
BmeT110I CYCGRG 1 cut(s) 851
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 334, 482, 541
BmiI GGNNCC 4 cut(s) 336, 483, 716, 995
BmrFI CCNGG 2 cut(s) 666, 689
BmsI GCATC 2 cut(s) 219, 360
BoxI GACNNNNGTC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 272, 1199
BpuEI CTTGAG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 971, 1058
BsaJI CCNNGG 4 cut(s) 181, 687, 981, 1047
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 276
Bse1I ACTGG 1 cut(s) 828
Bse21I CCTNAGG 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 2 cut(s) 666, 689
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 181, 687, 981, 1047
BseLI CCNNNNNNNGG 2 cut(s) 187, 276
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 695, 1071, 1077
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 794
Bsh1236I CGCG 1 cut(s) 1049
BshFI GGCC 2 cut(s) 323, 542
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 900
BsiHKCI CYCGRG 1 cut(s) 851
BslFI GGGAC 1 cut(s) 1075
BslI CCNNNNNNNGG 2 cut(s) 187, 276
BsmAI GTCTC 2 cut(s) 971, 1058
BsmFI GGGAC 1 cut(s) 1075
BsnI GGCC 2 cut(s) 323, 542
Bso31I GGTCTC 2 cut(s) 971, 1058
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 900
Bsp143I GATC 4 cut(s) 237, 241, 396, 714
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 5 cut(s) 320, 520, 862, 1047, 1049
BspANI GGCC 2 cut(s) 323, 542
BspCNI CTCAG 3 cut(s) 696, 1070, 1078
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 1049
BspLI GGNNCC 4 cut(s) 336, 483, 716, 995
BspPI GGATC 4 cut(s) 236, 404, 709, 722
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 2 cut(s) 971, 1058
BsrBI CCGCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 1 cut(s) 828
BssECI CCNNGG 4 cut(s) 181, 687, 981, 1047
BssMI GATC 4 cut(s) 237, 241, 396, 714
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 2 cut(s) 181, 981
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 666, 689
Bst4CI ACNGT 4 cut(s) 190, 637, 926, 1203
Bst6I CTCTTC 3 cut(s) 80, 269, 969
BstAFI CTTAAG 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 653, 1183
BstDEI CTNAG 5 cut(s) 80, 704, 1057, 1086, 1130
BstDSI CCRYGG 2 cut(s) 181, 1047
BstEII GGTNACC 1 cut(s) 926
BstFNI CGCG 1 cut(s) 1049
BstKTI GATC 4 cut(s) 240, 244, 399, 717
BstMAI GTCTC 2 cut(s) 971, 1058
BstMBI GATC 4 cut(s) 237, 241, 396, 714
BstNI CCWGG 2 cut(s) 666, 689
BstNSI RCATGY 2 cut(s) 610, 1185
BstPAI GACNNNNGTC 1 cut(s) 339
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 2 cut(s) 664, 687
BstSFI CTRYAG 2 cut(s) 287, 904
BstUI CGCG 1 cut(s) 1049
BstV1I GCAGC 1 cut(s) 787
BstV2I GAAGAC 2 cut(s) 272, 1199
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu15I ATCGAT 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 2 cut(s) 323, 542
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 2 cut(s) 181, 1047
BtrI CACGTC 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 821
Cac8I GCNNGC 2 cut(s) 653, 1183
CaiI CAGNNNCTG 2 cut(s) 1100, 1145
Cfr13I GGNCC 3 cut(s) 334, 482, 541
Cfr42I CCGCGG 1 cut(s) 1050
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 1 cut(s) 1204
Csp6I GTAC 3 cut(s) 403, 674, 838
CviAII CATG 8 cut(s) 159, 182, 607, 629, 677, 1115, 1182, 1217
CviQI GTAC 3 cut(s) 403, 674, 838
DdeI CTNAG 5 cut(s) 80, 704, 1057, 1086, 1130
DpnI GATC 4 cut(s) 239, 243, 398, 716
DpnII GATC 4 cut(s) 237, 241, 396, 714
DraIII CACNNNGTG 1 cut(s) 1133
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 3 cut(s) 80, 269, 969
EarI CTCTTC 3 cut(s) 80, 269, 969
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 2 cut(s) 181, 981
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 2 cut(s) 971, 1058
Eco47I GGWCC 2 cut(s) 334, 482
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 2 cut(s) 507, 1167
Eco81I CCTNAGG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 851
Eco91I GGTNACC 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 898
EcoO109I RGGNCCY 2 cut(s) 334, 482
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 664, 687
EcoT14I CCWWGG 2 cut(s) 181, 981
EcoT22I ATGCAT 2 cut(s) 612, 618
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 2 cut(s) 181, 981
FaeI CATG 8 cut(s) 162, 185, 610, 632, 680, 1118, 1185, 1220
FaqI GGGAC 1 cut(s) 1075
FatI CATG 8 cut(s) 158, 181, 606, 628, 676, 1114, 1181, 1216
FauI CCCGC 1 cut(s) 1042
FauNDI CATATG 1 cut(s) 612
FblI GTMKAC 1 cut(s) 1234
Fnu4HI GCNGC 3 cut(s) 321, 776, 863
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 3 cut(s) 321, 776, 863
FspBI CTAG 2 cut(s) 420, 1032
GluI GCNGC 3 cut(s) 321, 776, 863
HaeIII GGCC 2 cut(s) 323, 542
HgaI GACGC 1 cut(s) 1204
Hin1II CATG 8 cut(s) 162, 185, 610, 632, 680, 1118, 1185, 1220
HindIII AAGCTT 2 cut(s) 407, 432
HinfI GANTC 7 cut(s) 46, 854, 986, 1025, 1073, 1136, 1142
HphI GGTGA 6 cut(s) 51, 202, 524, 655, 783, 938
Hpy166II GTNNAC 2 cut(s) 662, 1235
Hpy188I TCNGA 9 cut(s) 170, 249, 590, 1087, 1096, 1111, 1141, 1147, 1171
Hpy188III TCNNGA 3 cut(s) 355, 485, 851
Hpy8I GTNNAC 2 cut(s) 662, 1235
Hpy99I CGWCG 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 72, 325
HpyCH4III ACNGT 4 cut(s) 190, 637, 926, 1203
HpyCH4IV ACGT 2 cut(s) 340, 1231
HpyCH4V TGCA 9 cut(s) 232, 563, 610, 616, 651, 775, 881, 917, 1185
HpyF3I CTNAG 5 cut(s) 80, 704, 1057, 1086, 1130
HpySE526I ACGT 2 cut(s) 340, 1231
Hsp92II CATG 8 cut(s) 162, 185, 610, 632, 680, 1118, 1185, 1220
KspI CCGCGG 1 cut(s) 1050
Kzo9I GATC 4 cut(s) 237, 241, 396, 714
LmnI GCTCC 2 cut(s) 517, 895
Lsp1109I GCAGC 1 cut(s) 787
LweI GCATC 2 cut(s) 219, 360
MaeI CTAG 2 cut(s) 420, 1032
MaeII ACGT 2 cut(s) 340, 1231
MaeIII GTNAC 3 cut(s) 57, 789, 926
MalI GATC 4 cut(s) 239, 243, 398, 716
MbiI CCGCTC 1 cut(s) 520
MboI GATC 4 cut(s) 237, 241, 396, 714
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 900
MluCI AATT 9 cut(s) 108, 193, 556, 567, 582, 693, 720, 890, 1243
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 3 cut(s) 119, 712, 992
Mph1103I ATGCAT 2 cut(s) 612, 618
MseI TTAA 6 cut(s) 282, 453, 603, 834, 999, 1212
MslI CAYNNNNRTG 2 cut(s) 611, 681
MspA1I CMGCKG 1 cut(s) 1049
MspCI CTTAAG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 666, 689
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 2 cut(s) 666, 689
MvnI CGCG 1 cut(s) 1049
NcoI CCATGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 612
NdeII GATC 4 cut(s) 237, 241, 396, 714
NlaIII CATG 8 cut(s) 162, 185, 610, 632, 680, 1118, 1185, 1220
NlaIV GGNNCC 4 cut(s) 336, 483, 716, 995
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 57, 789, 926
NsiI ATGCAT 2 cut(s) 612, 618
NspI RCATGY 2 cut(s) 610, 1185
PaeI GCATGC 1 cut(s) 1185
PaeR7I CTCGAG 1 cut(s) 851
PfeI GAWTC 6 cut(s) 46, 986, 1025, 1073, 1136, 1142
PkrI GCNGC 3 cut(s) 322, 777, 864
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PpuMI RGGWCCY 2 cut(s) 334, 482
PshAI GACNNNNGTC 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 900
Psp5II RGGWCCY 2 cut(s) 334, 482
Psp6I CCWGG 2 cut(s) 664, 687
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 664, 687
PspN4I GGNNCC 4 cut(s) 336, 483, 716, 995
PspPI GGNCC 3 cut(s) 334, 482, 541
PspPPI RGGWCCY 2 cut(s) 334, 482
PstNI CAGNNNCTG 2 cut(s) 1100, 1145
PsuI RGATCY 1 cut(s) 714
RsaI GTAC 3 cut(s) 404, 675, 839
RsaNI GTAC 3 cut(s) 403, 674, 838
RseI CAYNNNNRTG 2 cut(s) 611, 681
SacI GAGCTC 1 cut(s) 900
SacII CCGCGG 1 cut(s) 1050
SaqAI TTAA 6 cut(s) 282, 453, 603, 834, 999, 1212
SatI GCNGC 3 cut(s) 321, 776, 863
Sau3AI GATC 4 cut(s) 237, 241, 396, 714
Sau96I GGNCC 3 cut(s) 334, 482, 541
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 2 cut(s) 666, 689
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 2 cut(s) 219, 360
SfcI CTRYAG 2 cut(s) 287, 904
Sfr274I CTCGAG 1 cut(s) 851
Sfr303I CCGCGG 1 cut(s) 1050
SgrBI CCGCGG 1 cut(s) 1050
SinI GGWCC 2 cut(s) 334, 482
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 2 cut(s) 611, 681
SmlI CTYRAG 3 cut(s) 175, 452, 851
SmoI CTYRAG 3 cut(s) 175, 452, 851
SpeI ACTAGT 1 cut(s) 1031
SphI GCATGC 1 cut(s) 1185
Sse9I AATT 9 cut(s) 108, 193, 556, 567, 582, 693, 720, 890, 1243
SsiI CCGC 5 cut(s) 320, 520, 862, 1047, 1049
SspMI CTAG 2 cut(s) 420, 1032
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 2 cut(s) 664, 687
StyI CCWWGG 2 cut(s) 181, 981
TaaI ACNGT 4 cut(s) 190, 637, 926, 1203
TaiI ACGT 2 cut(s) 343, 1234
TaqI TCGA 5 cut(s) 44, 240, 757, 852, 1190
TasI AATT 9 cut(s) 108, 193, 556, 567, 582, 693, 720, 890, 1243
TatI WGTACW 2 cut(s) 402, 673
TauI GCSGC 2 cut(s) 323, 865
TfiI GAWTC 6 cut(s) 46, 986, 1025, 1073, 1136, 1142
Tru1I TTAA 6 cut(s) 282, 453, 603, 834, 999, 1212
Tru9I TTAA 6 cut(s) 282, 453, 603, 834, 999, 1212
TscAI CASTG 2 cut(s) 388, 828
TseFI GTSAC 3 cut(s) 57, 789, 926
TseI GCWGC 1 cut(s) 775
Tsp45I GTSAC 3 cut(s) 57, 789, 926
TspDTI ATGAA 6 cut(s) 477, 545, 645, 693, 859, 1191
TspRI CASTG 2 cut(s) 388, 828
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 334, 482
XapI RAATTY 3 cut(s) 193, 582, 1243
XceI RCATGY 2 cut(s) 610, 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 1234
XspI CTAG 2 cut(s) 420, 1032
Zsp2I ATGCAT 2 cut(s) 612, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.