RLG00000008767

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015258
Physical Location & Seq
Reverse (-)
36715362 .. 36720192
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008767

Sequence Viewer

Length: 1098 bp
ATGGCAAAAGCTGTGTTTCGTCTAGCATCTTCCGTTCTCAAATCTTCGCCTCCTAAACTTGTTCTCCTTGGAATTCGAAGGTCGGGTTTTCTAAGCCATGACTACTTGCGGCGCCCAAATGTACCAAACCCATGTTGGCTTTTCAGAAACATGAGCCATGGGTCTGTGAGTTTGGTGATATCTCAAGGAAAACCCAAGTTTGAGACGTACCAAATTGATCCTCCTAAGAAGCACAAGTGGTTGACCAAGAAGAGGTTGAAGATTCAGAGGAAGAGGGAGAAGCAGGAGAGGAAAGCAGCCAACAAGAGGGACCCCCGTCGGCTTCGCATTAAGGGGAACAAGAAGAAGTTTGCTAATGCTGAGGACAAAATCAAGTTCAAGCTTGAAAAGGCCAGAGTTAAGGAGGGTTTGCTGATTGAAAGACTTAAGCGGTATGAAATTCCAAAAGTTCAGGGTCCTGTGGTACAACCAAATTATCTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCCCAAAAGAAGTCTAACTATGCCCCAATTGGCAAACGAGGAATTTTTGGAGGTGTTATCCTTAATATGCATATGCATTGGAAGAAACATGAAACTGTAAAGGTTATTTGCAAGCCCTGCAAGCCTGGCCAAGTACATGACTATGCACAGGAAATTGCTAGACTGAGTGGGGGAATCCCAATTCAGGTTGTTGGAGATGACACCATAATATTTTATCGAGGAAAGAACTATGTGCAGCCGGCAGTAATGTCACCCGTAGATACTTTATCGAAAAAAAGGGCACTGGAGAAATCCAAATATGAGCAATCGCTAGAGTCTGTGCGGCACTTCATTGCTATTGCTGAGAAGGAATTGGAGCTCTATTACAGGCACATTGCGCTTTATGGTAACCCAAATGATGGAAATCCCATTTCAGTTTTGGATGGTCCTACAAAAGAAACTGAGGCATCAGAGAAACATAAAATACTAGAAAACCAAATTCTAGACTCTGCTAGTGATTTCTTTTCCGCAGGTCTTCTTGAGACAGAATCAGACTCATCAGATTCAGAGCTGTTAAAAGCTGATGATTTTGAAGATCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

366

Amino Acids

41.89

Weight (kDa)

9.81

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 160 - 244 5e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 493
AciI CCGC 5 cut(s) 109, 430, 493, 835, 1020
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 4 cut(s) 72, 438, 555, 990
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 4 cut(s) 123, 209, 465, 648
AfiI CCNNNNNNNGG 4 cut(s) 252, 306, 697, 911
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 5 cut(s) 259, 379, 386, 419, 1085
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 5 cut(s) 11, 382, 871, 1063, 1073
AluI AGCT 5 cut(s) 11, 382, 871, 1063, 1073
Alw21I GWGCWC 1 cut(s) 873
Alw26I GTCTC 2 cut(s) 197, 1028
AlwI GGATC 1 cut(s) 212
AoxI GGCC 3 cut(s) 390, 513, 640
ApeKI GCWGC 2 cut(s) 296, 748
ApoI RAATTY 4 cut(s) 72, 438, 555, 990
AspLEI GCGC 2 cut(s) 114, 892
AspS9I GGNCC 4 cut(s) 310, 455, 514, 938
AsuHPI GGTGA 3 cut(s) 187, 497, 756
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 3 cut(s) 310, 455, 938
BaeGI GKGCMC 1 cut(s) 796
BalI TGGCCA 1 cut(s) 642
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 873
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 308, 760
BccI CCATC 2 cut(s) 905, 929
BciT130I CCWGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 197, 1028
BfaI CTAG 6 cut(s) 23, 672, 824, 980, 995, 1005
BfoI RGCGCY 1 cut(s) 115
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 1013
BisI GCNGC 4 cut(s) 110, 297, 749, 836
BlsI GCNGC 4 cut(s) 111, 298, 750, 837
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 3 cut(s) 310, 455, 938
BmgT120I GGNCC 4 cut(s) 310, 455, 514, 938
BmiI GGNNCC 4 cut(s) 113, 311, 312, 456
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 2 cut(s) 35, 968
BoxI GACNNNNGTC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 1019
BpmI CTGGAG 1 cut(s) 818
Bpu10I CCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 168, 1052
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 67, 157
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 306, 697, 911
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 1 cut(s) 801
Bse3DI GCAATG 2 cut(s) 843, 885
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 67, 157
BseGI GGATG 1 cut(s) 940
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 4 cut(s) 252, 306, 697, 911
BseMI GCAATG 2 cut(s) 843, 885
BseMII CTCAG 4 cut(s) 351, 668, 846, 945
BseNI ACTGG 1 cut(s) 801
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 796
BseXI GCAGC 2 cut(s) 308, 760
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 3 cut(s) 392, 515, 642
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 873
BsiSI CCGG 1 cut(s) 752
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 4 cut(s) 252, 306, 697, 911
BsmAI GTCTC 2 cut(s) 197, 1028
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 3 cut(s) 392, 515, 642
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 796, 873
Bsp143I GATC 2 cut(s) 217, 1087
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 5 cut(s) 109, 430, 493, 835, 1020
BspANI GGCC 3 cut(s) 392, 515, 642
BspCNI CTCAG 4 cut(s) 352, 669, 847, 946
BspLI GGNNCC 4 cut(s) 113, 311, 312, 456
BspMI ACCTGC 1 cut(s) 1013
BspPI GGATC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 493
BsrDI GCAATG 2 cut(s) 843, 885
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 1 cut(s) 801
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 2 cut(s) 67, 157
BssMI GATC 2 cut(s) 217, 1087
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 67, 157
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 2 cut(s) 245, 266
BstACI GRCGYC 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 630
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 626, 635, 753
BstDEI CTNAG 6 cut(s) 92, 225, 360, 677, 855, 954
BstDSI CCRYGG 1 cut(s) 157
BstEII GGTNACC 1 cut(s) 899
BstF5I GGATG 1 cut(s) 940
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 892
BstKTI GATC 2 cut(s) 220, 1090
BstMAI GTCTC 2 cut(s) 197, 1028
BstMBI GATC 2 cut(s) 217, 1087
BstMWI GCNNNNNNNGC 4 cut(s) 630, 634, 639, 889
BstNI CCWGG 1 cut(s) 639
BstPAI GACNNNNGTC 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 796
BstV1I GCAGC 2 cut(s) 308, 760
BstV2I GAAGAC 1 cut(s) 1019
BsuRI GGCC 3 cut(s) 392, 515, 642
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 940
BtsIMutI CAGTG 1 cut(s) 794
BveI ACCTGC 1 cut(s) 1013
Cac8I GCNNGC 3 cut(s) 626, 635, 753
CfoI GCGC 2 cut(s) 114, 892
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 4 cut(s) 310, 455, 514, 938
Csp6I GTAC 4 cut(s) 122, 208, 464, 647
CviAII CATG 6 cut(s) 98, 132, 151, 158, 602, 650
CviQI GTAC 4 cut(s) 122, 208, 464, 647
DdeI CTNAG 6 cut(s) 92, 225, 360, 677, 855, 954
DinI GGCGCC 1 cut(s) 113
DpnI GATC 2 cut(s) 219, 1089
DpnII GATC 2 cut(s) 217, 1087
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 2 cut(s) 245, 266
EarI CTCTTC 2 cut(s) 245, 266
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 67, 157
Eco24I GRGCYC 1 cut(s) 873
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 3 cut(s) 310, 455, 938
Eco53kI GAGCTC 1 cut(s) 871
Eco91I GGTNACC 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 871
EcoO109I RGGNCCY 2 cut(s) 310, 455
EcoO65I GGTNACC 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 637
EcoRV GATATC 1 cut(s) 180
EcoT14I CCWWGG 2 cut(s) 67, 157
EcoT22I ATGCAT 2 cut(s) 585, 591
EcoT38I GRGCYC 1 cut(s) 873
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 2 cut(s) 67, 157
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 6 cut(s) 101, 135, 154, 161, 605, 653
FaqI GGGAC 1 cut(s) 323
FatI CATG 6 cut(s) 97, 131, 150, 157, 601, 649
FauNDI CATATG 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 110, 297, 749, 836
FokI GGATG 1 cut(s) 947
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 4 cut(s) 110, 297, 749, 836
FspBI CTAG 6 cut(s) 23, 672, 824, 980, 995, 1005
GlaI GCGC 2 cut(s) 113, 891
GluI GCNGC 4 cut(s) 110, 297, 749, 836
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 3 cut(s) 392, 515, 642
HapII CCGG 1 cut(s) 752
HhaI GCGC 2 cut(s) 114, 892
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 6 cut(s) 101, 135, 154, 161, 605, 653
Hin6I GCGC 2 cut(s) 112, 890
HinP1I GCGC 2 cut(s) 112, 890
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 7 cut(s) 262, 687, 827, 998, 1040, 1046, 1055
HpaII CCGG 1 cut(s) 752
HphI GGTGA 3 cut(s) 187, 497, 756
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 7 cut(s) 146, 267, 480, 964, 1045, 1054, 1060
Hpy188III TCNNGA 2 cut(s) 995, 1031
Hpy8I GTNNAC 1 cut(s) 243
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 72, 853
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 6 cut(s) 583, 589, 624, 633, 659, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 630, 634, 639, 889
HpyF3I CTNAG 6 cut(s) 92, 225, 360, 677, 855, 954
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 6 cut(s) 101, 135, 154, 161, 605, 653
HspAI GCGC 2 cut(s) 112, 890
KasI GGCGCC 1 cut(s) 111
KflI GGGWCCC 1 cut(s) 310
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Kzo9I GATC 2 cut(s) 217, 1087
LmnI GCTCC 2 cut(s) 490, 868
Lsp1109I GCAGC 2 cut(s) 308, 760
LweI GCATC 2 cut(s) 35, 968
MaeI CTAG 6 cut(s) 23, 672, 824, 980, 995, 1005
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 762, 899
MalI GATC 2 cut(s) 219, 1089
MbiI CCGCTC 1 cut(s) 493
MboI GATC 2 cut(s) 217, 1087
MfeI CAATTG 1 cut(s) 540
MhlI GDGCHC 2 cut(s) 796, 873
MlsI TGGCCA 1 cut(s) 642
MluNI TGGCCA 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 3 cut(s) 836, 992, 1040
MmeI TCCRAC 1 cut(s) 685
Mox20I TGGCCA 1 cut(s) 642
Mph1103I ATGCAT 2 cut(s) 585, 591
MroNI GCCGGC 1 cut(s) 751
MscI TGGCCA 1 cut(s) 642
MseI TTAA 5 cut(s) 330, 399, 426, 576, 1067
MslI CAYNNNNRTG 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 642
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 630, 634, 639, 889
NaeI GCCGGC 1 cut(s) 753
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 585
NdeII GATC 2 cut(s) 217, 1087
NgoMIV GCCGGC 1 cut(s) 751
NlaIII CATG 6 cut(s) 101, 135, 154, 161, 605, 653
NlaIV GGNNCC 4 cut(s) 113, 311, 312, 456
NmuCI GTSAC 1 cut(s) 762
NsiI ATGCAT 2 cut(s) 585, 591
NspV TTCGAA 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 4 cut(s) 262, 687, 1040, 1055
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 4 cut(s) 111, 298, 750, 837
PleI GAGTC 3 cut(s) 835, 992, 1040
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 3 cut(s) 835, 992, 1040
PpuMI RGGWCCY 2 cut(s) 310, 455
PshAI GACNNNNGTC 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 873
Psp5II RGGWCCY 2 cut(s) 310, 455
Psp6I CCWGG 1 cut(s) 637
PspEI GGTNACC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 4 cut(s) 113, 311, 312, 456
PspPI GGNCC 4 cut(s) 310, 455, 514, 938
PspPPI RGGWCCY 2 cut(s) 310, 455
RsaI GTAC 4 cut(s) 123, 209, 465, 648
RsaNI GTAC 4 cut(s) 122, 208, 464, 647
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 1 cut(s) 873
SaqAI TTAA 5 cut(s) 330, 399, 426, 576, 1067
SatI GCNGC 4 cut(s) 110, 297, 749, 836
Sau3AI GATC 2 cut(s) 217, 1087
Sau96I GGNCC 4 cut(s) 310, 455, 514, 938
SchI GAGTC 3 cut(s) 836, 992, 1040
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 796, 873
SfaNI GCATC 2 cut(s) 35, 968
SfoI GGCGCC 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 3 cut(s) 310, 455, 938
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 3 cut(s) 183, 425, 1031
SmoI CTYRAG 3 cut(s) 183, 425, 1031
SsiI CCGC 5 cut(s) 109, 430, 493, 835, 1020
SspDI GGCGCC 1 cut(s) 111
SspI AATATT 1 cut(s) 723
SspMI CTAG 6 cut(s) 23, 672, 824, 980, 995, 1005
SstI GAGCTC 1 cut(s) 873
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 67, 157
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 1 cut(s) 209
TaqI TCGA 3 cut(s) 76, 730, 782
TatI WGTACW 1 cut(s) 646
TauI GCSGC 2 cut(s) 112, 838
TfiI GAWTC 4 cut(s) 262, 687, 1040, 1055
Tru1I TTAA 5 cut(s) 330, 399, 426, 576, 1067
Tru9I TTAA 5 cut(s) 330, 399, 426, 576, 1067
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 762
TseI GCWGC 2 cut(s) 296, 748
Tsp45I GTSAC 1 cut(s) 762
TspDTI ATGAA 4 cut(s) 450, 518, 618, 832
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 801
Van91I CCANNNNNTGG 1 cut(s) 911
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 3 cut(s) 310, 455, 938
XapI RAATTY 4 cut(s) 72, 438, 555, 990
XbaI TCTAGA 1 cut(s) 994
XcmI CCANNNNNNNNNTGG 2 cut(s) 132, 928
XspI CTAG 6 cut(s) 23, 672, 824, 980, 995, 1005
Zsp2I ATGCAT 2 cut(s) 585, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.