Rh4BG136200

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015258
Physical Location & Seq
Forward (+)
24236217 .. 24242307
6091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG136200.1

Sequence Viewer

Length: 1101 bp
ATGGCAAAAGCTGTGTTTCGTCTAGCATCTTCCTTTCTCAAATCTTCGCCTCCTAAACTTGTTCTCTTTGGAATTCGAAGGTCGGGTTTTCTAAGCCATGAGTACTTGCGGCGGCGCCCAAATGTACCAAACCCAGGTTGGCTTTTCAGAAACATGAGCCATGGGTCTGTGAGTTTGGTGATTTCTCAAGGAAAACCCAAGTTTGAGACGTACCAGGTTGATCCTCCTAAGAAGCACAAGTGGTTGACCAAGAAGAGGTTGAAGATTCAGAGGAAGAGGGAGAAGCAGGAGAGGAAAGCAGCGAACAAGAGGGACCCCCGTCGGCTTCGCATTAAGGGGAACAAGAAAAAGTTTGCTAATGCTGAGGACAAAATCAAGTTCAAGCTTGAAAAGGCCAGAGTTAAGGAGGCTTTGCTGATTGAAAGACTTAAGCGGTATGAAATTCCAAAAGTTCAGGGTCCTGTGGTACAACCAAATTATCTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCCCAAAAGAAGTCTAACTATGCCCCAATTGGCAAACGAGGAATTTTTGGAGGTGTTATTCTTAATATGCATTTGCATTGGAAGAAACATGAAACGGTAAAGGTTATTTGCAAGCCCTGCAAGCCTGGCCAAGTACATGAGTATGCACAGGAAATTGCTAGACTGAGTGGGGGAATCCCAATTCAGGTTGTTGGAGATGACACCATAATATTTTATCGAGGAAAGAACTATGTGCAGCCGGCAGTAATGTCACCCGTAGATACTTTATCGAAAAAAAGGGCACTGGAGAAATCCAAATATGAGCAATCGCTGGAGTCTGTGCGGCACTTCATTGCTATTGCTGAGAAGGAATTGGAGCTCTATTACAGGCACATTGCGCTTTATGGTAACCCAAATGATGGAAATCCCATTTCAGTTTTGGATGGTCCTACAAAAGAAACTGAGGCATCAGAGAAACATAAAATACTAGAAAACCAAATTCTAGACTCTGCTAGTGATTTCTTTTCTGCAGGTCTTCTTGAGACAGAATCAGACTCATCAGATTCAGAGCTGTTAAAAGCTGATGATTTTGAAGATCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

366

Amino Acids

42.09

Weight (kDa)

9.87

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 161 - 245 3.6e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1016
AccB1I GGYRCC 1 cut(s) 114
AccB7I CCANNNNNTGG 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 5 cut(s) 109, 112, 433, 496, 838
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 4 cut(s) 72, 441, 558, 993
AcyI GRCGYC 1 cut(s) 115
AfaI GTAC 5 cut(s) 104, 126, 212, 468, 651
AfiI CCNNNNNNNGG 4 cut(s) 134, 255, 700, 914
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 5 cut(s) 262, 382, 389, 422, 1088
AjnI CCWGG 3 cut(s) 133, 213, 640
AluBI AGCT 5 cut(s) 11, 385, 874, 1066, 1076
AluI AGCT 5 cut(s) 11, 385, 874, 1066, 1076
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 200, 1031
AlwI GGATC 1 cut(s) 215
AoxI GGCC 3 cut(s) 393, 516, 643
ApeKI GCWGC 2 cut(s) 299, 751
ApoI RAATTY 4 cut(s) 72, 441, 558, 993
AspLEI GCGC 2 cut(s) 117, 895
AspS9I GGNCC 4 cut(s) 313, 458, 517, 941
AsuHPI GGTGA 3 cut(s) 190, 500, 759
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 3 cut(s) 313, 458, 941
BaeGI GKGCMC 1 cut(s) 799
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 876
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 876
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 311, 763
BccI CCATC 2 cut(s) 908, 932
BciT130I CCWGG 3 cut(s) 135, 215, 642
BcoDI GTCTC 2 cut(s) 200, 1031
BfaI CTAG 5 cut(s) 23, 675, 983, 998, 1008
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 1016
BisI GCNGC 5 cut(s) 110, 113, 300, 752, 839
BlsI GCNGC 5 cut(s) 111, 114, 301, 753, 840
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 135, 215, 642
Bme18I GGWCC 3 cut(s) 313, 458, 941
BmgT120I GGNCC 4 cut(s) 313, 458, 517, 941
BmiI GGNNCC 4 cut(s) 116, 314, 315, 459
BmrFI CCNGG 3 cut(s) 135, 215, 642
BmsI GCATC 2 cut(s) 35, 971
BoxI GACNNNNGTC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 1022
BpmI CTGGAG 2 cut(s) 821, 848
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 171, 1055
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 133, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 255, 700, 914
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 804
Bse3DI GCAATG 2 cut(s) 846, 888
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 3 cut(s) 135, 215, 642
BseDI CCNNGG 2 cut(s) 133, 160
BseGI GGATG 1 cut(s) 943
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 4 cut(s) 134, 255, 700, 914
BseMI GCAATG 2 cut(s) 846, 888
BseMII CTCAG 4 cut(s) 354, 671, 849, 948
BseNI ACTGG 1 cut(s) 804
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 799
BseXI GCAGC 2 cut(s) 311, 763
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 3 cut(s) 395, 518, 645
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 876
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 4 cut(s) 134, 255, 700, 914
BsmAI GTCTC 2 cut(s) 200, 1031
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 3 cut(s) 395, 518, 645
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 799, 876
Bsp143I GATC 2 cut(s) 220, 1090
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 5 cut(s) 109, 112, 433, 496, 838
BspANI GGCC 3 cut(s) 395, 518, 645
BspCNI CTCAG 4 cut(s) 355, 672, 850, 949
BspLI GGNNCC 4 cut(s) 116, 314, 315, 459
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 1016
BspPI GGATC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 846, 888
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 1 cut(s) 804
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 2 cut(s) 133, 160
BssMI GATC 2 cut(s) 220, 1090
BssNI GRCGYC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 3 cut(s) 135, 215, 642
Bst4CI ACNGT 1 cut(s) 613
Bst6I CTCTTC 2 cut(s) 248, 269
BstACI GRCGYC 1 cut(s) 115
BstAFI CTTAAG 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 633
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 629, 638, 756
BstDEI CTNAG 6 cut(s) 92, 228, 363, 680, 858, 957
BstDSI CCRYGG 1 cut(s) 160
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 1 cut(s) 943
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 895
BstKTI GATC 2 cut(s) 223, 1093
BstMAI GTCTC 2 cut(s) 200, 1031
BstMBI GATC 2 cut(s) 220, 1090
BstMWI GCNNNNNNNGC 4 cut(s) 633, 637, 642, 892
BstNI CCWGG 3 cut(s) 135, 215, 642
BstPAI GACNNNNGTC 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 3 cut(s) 133, 213, 640
BstSFI CTRYAG 1 cut(s) 1023
BstSLI GKGCMC 1 cut(s) 799
BstV1I GCAGC 2 cut(s) 311, 763
BstV2I GAAGAC 1 cut(s) 1022
BsuRI GGCC 3 cut(s) 395, 518, 645
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 797
BveI ACCTGC 1 cut(s) 1016
Cac8I GCNNGC 3 cut(s) 629, 638, 756
CfoI GCGC 2 cut(s) 117, 895
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 4 cut(s) 313, 458, 517, 941
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 5 cut(s) 103, 125, 211, 467, 650
CviAII CATG 5 cut(s) 98, 154, 161, 605, 653
CviQI GTAC 5 cut(s) 103, 125, 211, 467, 650
DdeI CTNAG 6 cut(s) 92, 228, 363, 680, 858, 957
DinI GGCGCC 1 cut(s) 116
DpnI GATC 2 cut(s) 222, 1092
DpnII GATC 2 cut(s) 220, 1090
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 248, 269
EarI CTCTTC 2 cut(s) 248, 269
Ecl136II GAGCTC 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 876
Eco47I GGWCC 3 cut(s) 313, 458, 941
Eco53kI GAGCTC 1 cut(s) 874
Eco91I GGTNACC 1 cut(s) 902
EcoICRI GAGCTC 1 cut(s) 874
EcoO109I RGGNCCY 2 cut(s) 313, 458
EcoO65I GGTNACC 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 133, 213, 640
EcoT14I CCWWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 876
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 5 cut(s) 101, 157, 164, 608, 656
FaqI GGGAC 1 cut(s) 326
FatI CATG 5 cut(s) 97, 153, 160, 604, 652
Fnu4HI GCNGC 5 cut(s) 110, 113, 300, 752, 839
FokI GGATG 1 cut(s) 950
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 5 cut(s) 110, 113, 300, 752, 839
FspBI CTAG 5 cut(s) 23, 675, 983, 998, 1008
GlaI GCGC 2 cut(s) 116, 894
GluI GCNGC 5 cut(s) 110, 113, 300, 752, 839
GsuI CTGGAG 2 cut(s) 821, 848
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 3 cut(s) 395, 518, 645
HapII CCGG 1 cut(s) 755
HhaI GCGC 2 cut(s) 117, 895
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 5 cut(s) 101, 157, 164, 608, 656
Hin6I GCGC 2 cut(s) 115, 893
HinP1I GCGC 2 cut(s) 115, 893
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 7 cut(s) 265, 690, 830, 1001, 1043, 1049, 1058
HpaII CCGG 1 cut(s) 755
HphI GGTGA 3 cut(s) 190, 500, 759
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 7 cut(s) 149, 270, 483, 967, 1048, 1057, 1063
Hpy188III TCNNGA 2 cut(s) 998, 1034
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 72, 856
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 7 cut(s) 586, 592, 627, 636, 662, 751, 1025
HpyF10VI GCNNNNNNNGC 4 cut(s) 633, 637, 642, 892
HpyF3I CTNAG 6 cut(s) 92, 228, 363, 680, 858, 957
HpySE526I ACGT 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 5 cut(s) 101, 157, 164, 608, 656
HspAI GCGC 2 cut(s) 115, 893
KasI GGCGCC 1 cut(s) 114
KflI GGGWCCC 1 cut(s) 313
KroI GCCGGC 1 cut(s) 754
KroNI GCCGGC 1 cut(s) 756
Kzo9I GATC 2 cut(s) 220, 1090
LmnI GCTCC 2 cut(s) 493, 871
Lsp1109I GCAGC 2 cut(s) 311, 763
LweI GCATC 2 cut(s) 35, 971
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 5 cut(s) 23, 675, 983, 998, 1008
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 765, 902
MalI GATC 2 cut(s) 222, 1092
MbiI CCGCTC 1 cut(s) 496
MboI GATC 2 cut(s) 220, 1090
MboII GAAGA 9 cut(s) 21, 36, 265, 274, 286, 520, 610, 1022, 1100
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 799, 876
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 9 cut(s) 72, 441, 475, 543, 558, 669, 696, 866, 993
MluNI TGGCCA 1 cut(s) 645
Mly113I GGCGCC 1 cut(s) 115
MlyI GAGTC 3 cut(s) 839, 995, 1043
MmeI TCCRAC 1 cut(s) 688
Mox20I TGGCCA 1 cut(s) 645
Mph1103I ATGCAT 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 645
MseI TTAA 5 cut(s) 333, 402, 429, 579, 1070
MslI CAYNNNNRTG 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 645
MspCI CTTAAG 1 cut(s) 428
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 3 cut(s) 135, 215, 642
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 3 cut(s) 135, 215, 642
MwoI GCNNNNNNNGC 4 cut(s) 633, 637, 642, 892
NaeI GCCGGC 1 cut(s) 756
NarI GGCGCC 1 cut(s) 115
NcoI CCATGG 1 cut(s) 160
NdeII GATC 2 cut(s) 220, 1090
NgoMIV GCCGGC 1 cut(s) 754
NlaIII CATG 5 cut(s) 101, 157, 164, 608, 656
NlaIV GGNNCC 4 cut(s) 116, 314, 315, 459
NmuCI GTSAC 1 cut(s) 765
NsiI ATGCAT 1 cut(s) 588
NspV TTCGAA 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 756
PfeI GAWTC 4 cut(s) 265, 690, 1043, 1058
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 5 cut(s) 111, 114, 301, 753, 840
PleI GAGTC 3 cut(s) 838, 995, 1043
PluTI GGCGCC 1 cut(s) 118
PpsI GAGTC 3 cut(s) 838, 995, 1043
PpuMI RGGWCCY 2 cut(s) 313, 458
PshAI GACNNNNGTC 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 876
Psp5II RGGWCCY 2 cut(s) 313, 458
Psp6I CCWGG 3 cut(s) 133, 213, 640
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 3 cut(s) 133, 213, 640
PspN4I GGNNCC 4 cut(s) 116, 314, 315, 459
PspPI GGNCC 4 cut(s) 313, 458, 517, 941
PspPPI RGGWCCY 2 cut(s) 313, 458
PstI CTGCAG 1 cut(s) 1027
RsaI GTAC 5 cut(s) 104, 126, 212, 468, 651
RsaNI GTAC 5 cut(s) 103, 125, 211, 467, 650
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 1 cut(s) 876
SaqAI TTAA 5 cut(s) 333, 402, 429, 579, 1070
SatI GCNGC 5 cut(s) 110, 113, 300, 752, 839
Sau3AI GATC 2 cut(s) 220, 1090
Sau96I GGNCC 4 cut(s) 313, 458, 517, 941
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 3 cut(s) 839, 995, 1043
ScrFI CCNGG 3 cut(s) 135, 215, 642
SduI GDGCHC 2 cut(s) 799, 876
SexAI ACCWGGT 1 cut(s) 213
SfaNI GCATC 2 cut(s) 35, 971
SfcI CTRYAG 1 cut(s) 1023
SfoI GGCGCC 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 3 cut(s) 313, 458, 941
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 186, 428, 1034
SmoI CTYRAG 3 cut(s) 186, 428, 1034
Sse9I AATT 9 cut(s) 72, 441, 475, 543, 558, 669, 696, 866, 993
SsiI CCGC 5 cut(s) 109, 112, 433, 496, 838
SspDI GGCGCC 1 cut(s) 114
SspI AATATT 1 cut(s) 726
SspMI CTAG 5 cut(s) 23, 675, 983, 998, 1008
SstI GAGCTC 1 cut(s) 876
StyD4I CCNGG 3 cut(s) 133, 213, 640
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 613
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 76, 733, 785
TasI AATT 9 cut(s) 72, 441, 475, 543, 558, 669, 696, 866, 993
TatI WGTACW 2 cut(s) 102, 649
TauI GCSGC 3 cut(s) 112, 115, 841
TfiI GAWTC 4 cut(s) 265, 690, 1043, 1058
Tru1I TTAA 5 cut(s) 333, 402, 429, 579, 1070
Tru9I TTAA 5 cut(s) 333, 402, 429, 579, 1070
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 765
TseI GCWGC 2 cut(s) 299, 751
Tsp45I GTSAC 1 cut(s) 765
TspDTI ATGAA 4 cut(s) 453, 521, 621, 835
TspRI CASTG 1 cut(s) 804
Van91I CCANNNNNTGG 1 cut(s) 914
Vha464I CTTAAG 1 cut(s) 428
VpaK11BI GGWCC 3 cut(s) 313, 458, 941
XapI RAATTY 4 cut(s) 72, 441, 558, 993
XbaI TCTAGA 1 cut(s) 997
XcmI CCANNNNNNNNNTGG 2 cut(s) 135, 931
XspI CTAG 5 cut(s) 23, 675, 983, 998, 1008
ZrmI AGTACT 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.