RchiOBHm_Chr4g0406531

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015258
Physical Location & Seq
Forward (+)
28364146 .. 28369334
5189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37787

Sequence Viewer

Length: 1104 bp
ATGGCAAAAGCTGCTGTGTTTCGTCTAGCGTCTTCCGTTCTCAAATCTTCGCCTCCTAAACTTGTTCTCTTTGGAATTCGAAGGCCGGGTTTTCTAAGCCATGAGTACTTGCGGCGGAGCCCAAATGTACCAAACCCAGGTTGGGTTGTCAGAAACATGAGCCATGGGTCTGTGAGTTTGGTGATATCTCAAGGTAAACCCAAATTTGAGACGTACCAAGTTGATCCTCCTAAGAAGCACAAGTGGTTGACCAAGAAGAGGTTGAAGATTCAGAGGAAGAGGGAGAAGCAGGAGAGGAAAGCAGCGAACAAGAGGGACCCCCGTCGGCTTCGCATTCAGGGGAACAAGAAAAAGTTTGCTAATGCTGAGGACAAAATCAAGTTCAAGCTTGAAAAGGCCAGAGTTAAGGAGGCTTTGCTGATTGAAAGACTTAAGCGGTATGAAATTCCAAAAGTTCAGGGTCCTGTGGTACAACCAAATTATCTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCCCAAAAGAAGTCTAACTATGCCCCAATTGGCAAACGAGGAATTTTTGGAGGTGTTATTCTTAATATGCATTTGCATTGGAAGAAACATGAAACGGTAAAGGTTATTTGCAAGCCCTGCAAGCCTGGCCAAGTACATGAGTATGCACAGGAAATTGCTACACTGAGTGGGGGAATCCCAATTCAGGTTGTTGGAGATGACACCATAATATTTTATCGAGGAAAGAACTATGTGCAGCCGGCAGTAATGTCACCCGTAGATACTTTATCAAAAAAAAGGGCACTGGAGAAATCCAAATATGAGCAATCGCTGGAGTCTGTGCGGCACTTCATTGCTATTGCTGAGAAGGAATTGGAGCTCTATTACAGGCACATTGCGCTTTATGGTAACCCAAATGATGGAAATCCCATTTCAGTTTTGGATGGTCCTACAAAAGAAACTGAGGCATCAGAGAAACATAAAATACTAGAAAACCAAATTCTAGACTCTGCTAGTGATTTCTTTTCTGCAGGTCTTCTTGAGACTGAATCAGACTCATCAGATTCAGAGCTGTTAAAAGCTGATGATTTTGAAGATCACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

367

Amino Acids

41.94

Weight (kDa)

9.79

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 162 - 246 4.9e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 499
AciI CCGC 5 cut(s) 112, 115, 436, 499, 841
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 5 cut(s) 75, 203, 444, 561, 996
AdeI CACNNNGTG 1 cut(s) 686
AfaI GTAC 5 cut(s) 107, 129, 215, 471, 654
AfiI CCNNNNNNNGG 5 cut(s) 137, 142, 258, 703, 917
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 5 cut(s) 265, 385, 392, 425, 1091
AjnI CCWGG 2 cut(s) 136, 643
AluBI AGCT 5 cut(s) 11, 388, 877, 1069, 1079
AluI AGCT 5 cut(s) 11, 388, 877, 1069, 1079
Alw21I GWGCWC 1 cut(s) 879
Alw26I GTCTC 2 cut(s) 203, 1034
AlwI GGATC 1 cut(s) 218
AoxI GGCC 4 cut(s) 83, 396, 519, 646
ApeKI GCWGC 3 cut(s) 11, 302, 754
ApoI RAATTY 5 cut(s) 75, 203, 444, 561, 996
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 4 cut(s) 316, 461, 520, 944
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 193, 503, 762
AsuII TTCGAA 1 cut(s) 79
AvaII GGWCC 3 cut(s) 316, 461, 944
BaeGI GKGCMC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 648
BanII GRGCYC 2 cut(s) 122, 879
BbsI GAAGAC 2 cut(s) 24, 1025
Bbv12I GWGCWC 1 cut(s) 879
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 314, 766
BccI CCATC 2 cut(s) 911, 935
BciT130I CCWGG 2 cut(s) 138, 645
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 203, 1034
BfaI CTAG 4 cut(s) 26, 986, 1001, 1011
BfmI CTRYAG 1 cut(s) 1026
BfrI CTTAAG 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 1019
BisI GCNGC 5 cut(s) 12, 113, 303, 755, 842
BlsI GCNGC 5 cut(s) 13, 114, 304, 756, 843
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 3 cut(s) 87, 138, 645
Bme18I GGWCC 3 cut(s) 316, 461, 944
BmgT120I GGNCC 4 cut(s) 316, 461, 520, 944
BmiI GGNNCC 4 cut(s) 119, 317, 318, 462
BmrFI CCNGG 3 cut(s) 87, 138, 645
BmsI GCATC 1 cut(s) 974
BoxI GACNNNNGTC 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 24, 1025
BpmI CTGGAG 2 cut(s) 824, 851
Bpu10I CCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 174, 1058
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 2 cut(s) 136, 163
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 142, 258, 703, 917
Bse118I RCCGGY 1 cut(s) 757
Bse1I ACTGG 1 cut(s) 807
Bse3DI GCAATG 2 cut(s) 849, 891
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 2 cut(s) 138, 645
BseDI CCNNGG 2 cut(s) 136, 163
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 5 cut(s) 137, 142, 258, 703, 917
BseMI GCAATG 2 cut(s) 849, 891
BseMII CTCAG 4 cut(s) 357, 674, 852, 951
BseNI ACTGG 1 cut(s) 807
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 802
BseXI GCAGC 2 cut(s) 314, 766
BsgI GTGCAG 1 cut(s) 773
BshFI GGCC 4 cut(s) 85, 398, 521, 648
BsiHKAI GWGCWC 1 cut(s) 879
BsiSI CCGG 2 cut(s) 86, 758
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 5 cut(s) 137, 142, 258, 703, 917
BsmAI GTCTC 2 cut(s) 203, 1034
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 4 cut(s) 85, 398, 521, 648
Bsp119I TTCGAA 1 cut(s) 79
Bsp1286I GDGCHC 3 cut(s) 122, 802, 879
Bsp143I GATC 2 cut(s) 223, 1093
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 5 cut(s) 112, 115, 436, 499, 841
BspANI GGCC 4 cut(s) 85, 398, 521, 648
BspCNI CTCAG 4 cut(s) 358, 675, 853, 952
BspLI GGNNCC 4 cut(s) 119, 317, 318, 462
BspMAI CTGCAG 1 cut(s) 1030
BspMI ACCTGC 1 cut(s) 1019
BspPI GGATC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 79
BspTI CTTAAG 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 499
BsrDI GCAATG 2 cut(s) 849, 891
BsrFI RCCGGY 1 cut(s) 757
BsrI ACTGG 1 cut(s) 807
BssAI RCCGGY 1 cut(s) 757
BssECI CCNNGG 2 cut(s) 136, 163
BssMI GATC 2 cut(s) 223, 1093
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 138, 645
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 251, 272
BstAFI CTTAAG 1 cut(s) 431
BstAPI GCANNNNNTGC 2 cut(s) 11, 636
BstBI TTCGAA 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 632, 641, 759
BstDEI CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
BstDSI CCRYGG 1 cut(s) 163
BstEII GGTNACC 1 cut(s) 905
BstF5I GGATG 1 cut(s) 946
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 2 cut(s) 226, 1096
BstMAI GTCTC 2 cut(s) 203, 1034
BstMBI GATC 2 cut(s) 223, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 11, 636, 640, 645, 895
BstNI CCWGG 2 cut(s) 138, 645
BstPAI GACNNNNGTC 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 3 cut(s) 85, 136, 643
BstSFI CTRYAG 1 cut(s) 1026
BstSLI GKGCMC 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 314, 766
BstV2I GAAGAC 2 cut(s) 24, 1025
BsuRI GGCC 4 cut(s) 85, 398, 521, 648
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 680, 800
BveI ACCTGC 1 cut(s) 1019
Cac8I GCNNGC 3 cut(s) 632, 641, 759
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 1 cut(s) 757
Cfr13I GGNCC 4 cut(s) 316, 461, 520, 944
CseI GACGC 1 cut(s) 18
Csp6I GTAC 5 cut(s) 106, 128, 214, 470, 653
CviAII CATG 5 cut(s) 101, 157, 164, 608, 656
CviQI GTAC 5 cut(s) 106, 128, 214, 470, 653
DdeI CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
DpnI GATC 2 cut(s) 225, 1095
DpnII GATC 2 cut(s) 223, 1093
DraIII CACNNNGTG 1 cut(s) 686
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 2 cut(s) 251, 272
EarI CTCTTC 2 cut(s) 251, 272
EciI GGCGGA 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 122, 879
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 3 cut(s) 316, 461, 944
Eco53kI GAGCTC 1 cut(s) 877
Eco91I GGTNACC 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 877
EcoO109I RGGNCCY 2 cut(s) 316, 461
EcoO65I GGTNACC 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 136, 643
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 122, 879
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 104, 160, 167, 611, 659
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 100, 156, 163, 607, 655
Fnu4HI GCNGC 5 cut(s) 12, 113, 303, 755, 842
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 2 cut(s) 122, 879
Fsp4HI GCNGC 5 cut(s) 12, 113, 303, 755, 842
FspBI CTAG 4 cut(s) 26, 986, 1001, 1011
GlaI GCGC 1 cut(s) 897
GluI GCNGC 5 cut(s) 12, 113, 303, 755, 842
GsuI CTGGAG 2 cut(s) 824, 851
HaeIII GGCC 4 cut(s) 85, 398, 521, 648
HapII CCGG 2 cut(s) 86, 758
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 898
Hin1II CATG 5 cut(s) 104, 160, 167, 611, 659
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 7 cut(s) 268, 693, 833, 1004, 1046, 1052, 1061
HpaII CCGG 2 cut(s) 86, 758
HphI GGTGA 3 cut(s) 193, 503, 762
Hpy166II GTNNAC 2 cut(s) 197, 249
Hpy188I TCNGA 7 cut(s) 152, 273, 486, 970, 1051, 1060, 1066
Hpy188III TCNNGA 2 cut(s) 1001, 1037
Hpy8I GTNNAC 2 cut(s) 197, 249
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 75, 859
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 7 cut(s) 589, 595, 630, 639, 665, 754, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 636, 640, 645, 895
HpyF3I CTNAG 6 cut(s) 95, 231, 366, 683, 861, 960
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 5 cut(s) 104, 160, 167, 611, 659
HspAI GCGC 1 cut(s) 896
KflI GGGWCCC 1 cut(s) 316
KroI GCCGGC 1 cut(s) 757
KroNI GCCGGC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 223, 1093
LmnI GCTCC 3 cut(s) 117, 496, 874
Lsp1109I GCAGC 2 cut(s) 314, 766
LweI GCATC 1 cut(s) 974
MaeI CTAG 4 cut(s) 26, 986, 1001, 1011
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 768, 905
MalI GATC 2 cut(s) 225, 1095
MbiI CCGCTC 1 cut(s) 499
MboI GATC 2 cut(s) 223, 1093
MboII GAAGA 9 cut(s) 24, 39, 268, 277, 289, 523, 613, 1025, 1103
MfeI CAATTG 1 cut(s) 546
MhlI GDGCHC 3 cut(s) 122, 802, 879
MlsI TGGCCA 1 cut(s) 648
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 3 cut(s) 842, 998, 1046
MmeI TCCRAC 1 cut(s) 691
Mox20I TGGCCA 1 cut(s) 648
Mph1103I ATGCAT 1 cut(s) 591
MroNI GCCGGC 1 cut(s) 757
MscI TGGCCA 1 cut(s) 648
MseI TTAA 4 cut(s) 405, 432, 582, 1073
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 2 cut(s) 86, 758
MspR9I CCNGG 3 cut(s) 87, 138, 645
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 2 cut(s) 138, 645
MwoI GCNNNNNNNGC 5 cut(s) 11, 636, 640, 645, 895
NaeI GCCGGC 1 cut(s) 759
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 1 cut(s) 163
NdeII GATC 2 cut(s) 223, 1093
NgoMIV GCCGGC 1 cut(s) 757
NlaIII CATG 5 cut(s) 104, 160, 167, 611, 659
NlaIV GGNNCC 4 cut(s) 119, 317, 318, 462
NmuCI GTSAC 1 cut(s) 768
NsiI ATGCAT 1 cut(s) 591
NspV TTCGAA 1 cut(s) 79
PctI GAATGC 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 759
PfeI GAWTC 4 cut(s) 268, 693, 1046, 1061
PflMI CCANNNNNTGG 1 cut(s) 917
PkrI GCNGC 5 cut(s) 13, 114, 304, 756, 843
PleI GAGTC 3 cut(s) 841, 998, 1046
PpsI GAGTC 3 cut(s) 841, 998, 1046
PpuMI RGGWCCY 2 cut(s) 316, 461
PshAI GACNNNNGTC 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 879
Psp5II RGGWCCY 2 cut(s) 316, 461
Psp6I CCWGG 2 cut(s) 136, 643
PspEI GGTNACC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 136, 643
PspN4I GGNNCC 4 cut(s) 119, 317, 318, 462
PspPI GGNCC 4 cut(s) 316, 461, 520, 944
PspPPI RGGWCCY 2 cut(s) 316, 461
PstI CTGCAG 1 cut(s) 1030
RsaI GTAC 5 cut(s) 107, 129, 215, 471, 654
RsaNI GTAC 5 cut(s) 106, 128, 214, 470, 653
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 879
SaqAI TTAA 4 cut(s) 405, 432, 582, 1073
SatI GCNGC 5 cut(s) 12, 113, 303, 755, 842
Sau3AI GATC 2 cut(s) 223, 1093
Sau96I GGNCC 4 cut(s) 316, 461, 520, 944
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 3 cut(s) 842, 998, 1046
ScrFI CCNGG 3 cut(s) 87, 138, 645
SduI GDGCHC 3 cut(s) 122, 802, 879
SfaNI GCATC 1 cut(s) 974
SfcI CTRYAG 1 cut(s) 1026
SfuI TTCGAA 1 cut(s) 79
SinI GGWCC 3 cut(s) 316, 461, 944
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 3 cut(s) 189, 431, 1037
SmoI CTYRAG 3 cut(s) 189, 431, 1037
SsiI CCGC 5 cut(s) 112, 115, 436, 499, 841
SspI AATATT 1 cut(s) 729
SspMI CTAG 4 cut(s) 26, 986, 1001, 1011
SstI GAGCTC 1 cut(s) 879
StyD4I CCNGG 3 cut(s) 85, 136, 643
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 79, 736
TatI WGTACW 2 cut(s) 105, 652
TauI GCSGC 2 cut(s) 115, 844
TfiI GAWTC 4 cut(s) 268, 693, 1046, 1061
Tru1I TTAA 4 cut(s) 405, 432, 582, 1073
Tru9I TTAA 4 cut(s) 405, 432, 582, 1073
TscAI CASTG 2 cut(s) 687, 807
TseFI GTSAC 1 cut(s) 768
TseI GCWGC 3 cut(s) 11, 302, 754
Tsp45I GTSAC 1 cut(s) 768
TspDTI ATGAA 4 cut(s) 456, 524, 624, 838
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 687, 807
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 3 cut(s) 316, 461, 944
XapI RAATTY 5 cut(s) 75, 203, 444, 561, 996
XbaI TCTAGA 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 934
XspI CTAG 4 cut(s) 26, 986, 1001, 1011
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.