MD04G1042300.v1.1

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015258
Physical Location & Seq
Forward (+)
4990923 .. 4995360
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1042300.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGCAAGAGCTGTGTTTTCGGCTGCTGTTCGCAGAGCTTCTTCGGTTCTCAAATCGCCTTCCAAACCCCACTCTCTAAGGTCAGGTTTTCCAACCCAAGAACCAATTTTCATTGCAACCAAACACTTGCCTCTGCCAAATCCTCTAAACCCATCATGGGTTTTCAGAAACTTGAGCCATGGGTCGGTGAATTTGGTGATATCACAGGGGAAACCCAAGTTCGAGATGCACGAAATCGATCCACCAAAAAAGGAGAAGTGGTTGACCAAGAAGAGGTTGAAGCAACAGAGAATGAGAGAAAAGCAGGAGAGAAGAGCCGCCAATAGGAAGGATCCACGTCGGCTCGGCATTCAGAGGAAAAAGAAAGGGCAGAAGTTTGCTAATGCTGAGGGGAGAATCAAGTACAAGCTTGAAAAGGCTAGAATAAAGGAAGCTTTGCTGATTGAAAGACTTAAGAGGTATGAAATTCCAAAAGTCCAGGGTCCTGAGGTACAACCAGATGACCTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCTCAAAAGAAGTCTAATTATGCACCAATTGGAAAACGAGGAATTTTCGGGGGCGTTATTCTTAACATGCATATGCATTGGAAAAAACATGAAACCGTCAAGGTGATTTGCAAGCCATGTAAACCTGGCCAAGTACATGAATATGCCCAGGAAATTGCTAGACTGAGTGGCGGGATCCCAATTCAAATAGTTGGAGATGACACCATAGTATTCTATCGAGGAAAGAACTACGTCATGCCAAAAGTTATGTCACCCACAAATACTTTGTCCAAGAAAAAGGCACTGGAAAAGTTTAAGTACGAGCAATCCCTCGAGACTGTGCGGCACTTCATTGCTGTTGCTGAGAAGGAACTGGAGCTGTATTACAGACATATTGCGCTTTATGGTGACCCAAATGACAGAAATCCCATTTCAATCTTGGATAGTCCAACAAAAGAGACCAAGGAATCAGGGGAACTTGAAAAGCAAAAGGTAGATTCCACAAGTGATTTCTTTTCCGCGAGTCTTTCAGAGATAGACACAGGTTCCTCAATCTCAGAGCTATCAGAATGTGAGGATTCTGAAGATGACAACCTATCAATAAACGAATCAGATTCTGAAGATCACAACGTTATCAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

388

Amino Acids

44.34

Weight (kDa)

9.61

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 169 - 253 3.9e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 520
AccII CGCG 1 cut(s) 1040
AciI CCGC 5 cut(s) 318, 520, 711, 862, 1038
AclI AACGTT 1 cut(s) 1149
AclWI GGATC 5 cut(s) 233, 326, 339, 709, 722
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 3 cut(s) 190, 465, 582
AcuI CTGAAG 2 cut(s) 1122, 1158
AfaI GTAC 4 cut(s) 404, 492, 675, 839
AfiI CCNNNNNNNGG 4 cut(s) 157, 184, 273, 324
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 6 cut(s) 280, 413, 446, 725, 954, 1001
AjiI CACGTC 1 cut(s) 338
AjnI CCWGG 3 cut(s) 477, 664, 687
AluBI AGCT 6 cut(s) 11, 38, 409, 434, 898, 1081
AluI AGCT 6 cut(s) 11, 38, 409, 434, 898, 1081
Alw26I GTCTC 2 cut(s) 848, 971
AlwI GGATC 5 cut(s) 233, 326, 339, 709, 722
AlwNI CAGNNNCTG 1 cut(s) 1136
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 1 cut(s) 667
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 190, 465, 582
ArsI GACNNNNNNTTYG 4 cut(s) 773, 791, 805, 823
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 6 cut(s) 199, 208, 524, 655, 783, 938
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 1 cut(s) 482
AxyI CCTNAGG 1 cut(s) 486
BalI TGGCCA 1 cut(s) 669
BamHI GGATCC 2 cut(s) 331, 714
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 479, 666, 689
BcoDI GTCTC 2 cut(s) 848, 971
BfaI CTAG 2 cut(s) 420, 699
BfrI CTTAAG 1 cut(s) 452
BisI GCNGC 3 cut(s) 24, 318, 863
BlsI GCNGC 3 cut(s) 25, 319, 864
Bme1390I CCNGG 3 cut(s) 479, 666, 689
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 851
BmgBI CACGTC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 4 cut(s) 333, 483, 716, 1066
BmrFI CCNGG 3 cut(s) 479, 666, 689
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 914
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 4 cut(s) 178, 478, 687, 981
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 184, 273, 324
Bse1I ACTGG 2 cut(s) 828, 897
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 2 cut(s) 111, 870
BseBI CCWGG 3 cut(s) 479, 666, 689
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 4 cut(s) 178, 478, 687, 981
BseLI CCNNNNNNNGG 4 cut(s) 157, 184, 273, 324
BseMI GCAATG 2 cut(s) 111, 870
BseMII CTCAG 5 cut(s) 378, 477, 695, 873, 1089
BseNI ACTGG 2 cut(s) 828, 897
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 1040
BshFI GGCC 1 cut(s) 669
BshVI ATCGAT 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 851
BslI CCNNNNNNNGG 4 cut(s) 157, 184, 273, 324
BsmAI GTCTC 2 cut(s) 848, 971
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 669
Bso31I GGTCTC 1 cut(s) 971
BsoBI CYCGRG 1 cut(s) 851
Bsp143I GATC 4 cut(s) 238, 331, 714, 1141
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 5 cut(s) 318, 520, 711, 862, 1038
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 5 cut(s) 379, 478, 696, 874, 1088
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 1040
BspLI GGNNCC 4 cut(s) 333, 483, 716, 1066
BspPI GGATC 5 cut(s) 233, 326, 339, 709, 722
BspQI GCTCTTC 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 971
BsrBI CCGCTC 1 cut(s) 520
BsrDI GCAATG 2 cut(s) 111, 870
BsrI ACTGG 2 cut(s) 828, 897
BssECI CCNNGG 4 cut(s) 178, 478, 687, 981
BssMI GATC 4 cut(s) 238, 331, 714, 1141
BssT1I CCWWGG 2 cut(s) 178, 981
Bst2UI CCWGG 3 cut(s) 479, 666, 689
Bst4CI ACNGT 2 cut(s) 637, 859
Bst6I CTCTTC 2 cut(s) 266, 307
BstAFI CTTAAG 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 6 cut(s) 77, 387, 486, 704, 882, 1075
BstDSI CCRYGG 1 cut(s) 178
BstEII GGTNACC 1 cut(s) 926
BstFNI CGCG 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 4 cut(s) 241, 334, 717, 1144
BstMAI GTCTC 2 cut(s) 848, 971
BstMBI GATC 4 cut(s) 238, 331, 714, 1141
BstNI CCWGG 3 cut(s) 479, 666, 689
BstNSI RCATGY 1 cut(s) 610
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 3 cut(s) 477, 664, 687
BstUI CGCG 1 cut(s) 1040
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 331, 714
BstYI RGATCY 2 cut(s) 331, 714
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 1 cut(s) 669
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 821
Cac8I GCNNGC 1 cut(s) 653
CaiI CAGNNNCTG 1 cut(s) 1136
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 1 cut(s) 482
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 4 cut(s) 403, 491, 674, 838
CviAII CATG 7 cut(s) 156, 179, 607, 629, 657, 677, 775
CviQI GTAC 4 cut(s) 403, 491, 674, 838
DdeI CTNAG 6 cut(s) 77, 387, 486, 704, 882, 1075
DpnI GATC 4 cut(s) 240, 333, 716, 1143
DpnII GATC 4 cut(s) 238, 331, 714, 1141
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 266, 307
EarI CTCTTC 2 cut(s) 266, 307
Eco130I CCWWGG 2 cut(s) 178, 981
Eco31I GGTCTC 1 cut(s) 971
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 482
Eco57I CTGAAG 2 cut(s) 1122, 1158
Eco81I CCTNAGG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 851
Eco91I GGTNACC 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 3 cut(s) 477, 664, 687
EcoRV GATATC 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 178, 981
EcoT22I ATGCAT 2 cut(s) 612, 618
ErhI CCWWGG 2 cut(s) 178, 981
FaeI CATG 7 cut(s) 159, 182, 610, 632, 660, 680, 778
FatI CATG 7 cut(s) 155, 178, 606, 628, 656, 676, 774
FauI CCCGC 1 cut(s) 704
FauNDI CATATG 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 24, 318, 863
Fsp4HI GCNGC 3 cut(s) 24, 318, 863
FspBI CTAG 2 cut(s) 420, 699
GlaI GCGC 1 cut(s) 918
GluI GCNGC 3 cut(s) 24, 318, 863
GsuI CTGGAG 1 cut(s) 914
HaeIII GGCC 1 cut(s) 669
HhaI GCGC 1 cut(s) 919
Hin1II CATG 7 cut(s) 159, 182, 610, 632, 660, 680, 778
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 2 cut(s) 407, 432
HinfI GANTC 7 cut(s) 396, 986, 1016, 1042, 1097, 1127, 1133
HphI GGTGA 6 cut(s) 199, 208, 524, 655, 783, 938
Hpy166II GTNNAC 2 cut(s) 264, 662
Hpy188I TCNGA 8 cut(s) 167, 354, 1051, 1078, 1087, 1102, 1132, 1138
Hpy188III TCNNGA 3 cut(s) 223, 485, 853
Hpy8I GTNNAC 2 cut(s) 264, 662
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 69, 322, 880
HpyCH4III ACNGT 2 cut(s) 637, 859
HpyCH4IV ACGT 3 cut(s) 337, 771, 1149
HpyCH4V TGCA 6 cut(s) 116, 229, 563, 610, 616, 651
HpyF3I CTNAG 6 cut(s) 77, 387, 486, 704, 882, 1075
HpySE526I ACGT 3 cut(s) 337, 771, 1149
Hsp92II CATG 7 cut(s) 159, 182, 610, 632, 660, 680, 778
HspAI GCGC 1 cut(s) 917
Kzo9I GATC 4 cut(s) 238, 331, 714, 1141
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 517, 895
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 420, 699
MaeII ACGT 3 cut(s) 337, 771, 1149
MaeIII GTNAC 2 cut(s) 789, 926
MalI GATC 4 cut(s) 240, 333, 716, 1143
MbiI CCGCTC 1 cut(s) 520
MboI GATC 4 cut(s) 238, 331, 714, 1141
MboII GAAGA 6 cut(s) 33, 283, 324, 544, 1115, 1151
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 2 cut(s) 331, 714
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 8 cut(s) 105, 190, 465, 556, 567, 582, 693, 720
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 1 cut(s) 1051
MmeI TCCRAC 3 cut(s) 116, 712, 992
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 2 cut(s) 612, 618
MscI TGGCCA 1 cut(s) 669
MseI TTAA 3 cut(s) 453, 603, 834
MslI CAYNNNNRTG 2 cut(s) 611, 681
Msp20I TGGCCA 1 cut(s) 669
MspCI CTTAAG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 479, 666, 689
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 3 cut(s) 479, 666, 689
MvnI CGCG 1 cut(s) 1040
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 612
NdeII GATC 4 cut(s) 238, 331, 714, 1141
NlaIII CATG 7 cut(s) 159, 182, 610, 632, 660, 680, 778
NlaIV GGNNCC 4 cut(s) 333, 483, 716, 1066
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 789, 926
NsiI ATGCAT 2 cut(s) 612, 618
NspI RCATGY 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 6 cut(s) 396, 986, 1016, 1097, 1127, 1133
PkrI GCNGC 3 cut(s) 25, 319, 864
PleI GAGTC 1 cut(s) 1050
PpsI GAGTC 1 cut(s) 1050
PpuMI RGGWCCY 1 cut(s) 482
Psp1406I AACGTT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 3 cut(s) 477, 664, 687
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 3 cut(s) 477, 664, 687
PspN4I GGNNCC 4 cut(s) 333, 483, 716, 1066
PspPI GGNCC 1 cut(s) 482
PspPPI RGGWCCY 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 1136
PsuI RGATCY 2 cut(s) 331, 714
RsaI GTAC 4 cut(s) 404, 492, 675, 839
RsaNI GTAC 4 cut(s) 403, 491, 674, 838
RseI CAYNNNNRTG 2 cut(s) 611, 681
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 453, 603, 834
SatI GCNGC 3 cut(s) 24, 318, 863
Sau3AI GATC 4 cut(s) 238, 331, 714, 1141
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 1 cut(s) 1051
ScrFI CCNGG 3 cut(s) 479, 666, 689
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 851
SinI GGWCC 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 2 cut(s) 611, 681
SmlI CTYRAG 3 cut(s) 172, 452, 851
SmoI CTYRAG 3 cut(s) 172, 452, 851
Sse9I AATT 8 cut(s) 105, 190, 465, 556, 567, 582, 693, 720
SsiI CCGC 5 cut(s) 318, 520, 711, 862, 1038
SspMI CTAG 2 cut(s) 420, 699
StyD4I CCNGG 3 cut(s) 477, 664, 687
StyI CCWWGG 2 cut(s) 178, 981
TaaI ACNGT 2 cut(s) 637, 859
TaiI ACGT 3 cut(s) 340, 774, 1152
TaqI TCGA 4 cut(s) 222, 237, 757, 852
TasI AATT 8 cut(s) 105, 190, 465, 556, 567, 582, 693, 720
TatI WGTACW 2 cut(s) 402, 673
TauI GCSGC 2 cut(s) 320, 865
TfiI GAWTC 6 cut(s) 396, 986, 1016, 1097, 1127, 1133
Tru1I TTAA 3 cut(s) 453, 603, 834
Tru9I TTAA 3 cut(s) 453, 603, 834
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 2 cut(s) 789, 926
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 789, 926
TspDTI ATGAA 6 cut(s) 100, 477, 545, 645, 693, 859
TspRI CASTG 1 cut(s) 828
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 3 cut(s) 190, 465, 582
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 851
XspI CTAG 2 cut(s) 420, 699
Zsp2I ATGCAT 2 cut(s) 612, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.