FvH4_4g10962

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016820
Physical Location & Seq
Forward (+)
14675040 .. 14679822
4783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10962.t1

Sequence Viewer

Length: 270 bp
ATGAGAAGGAGAAATAGCTGTATTGGAAGAGAGGAAGTAAACTCGCACTTTGGGTGCTACTGTGTTCTTGAAATGGGTGAAGACCAGCAAATTGAGATTTCTGCATTAACCCTTTTGATATCAAAGATGTGGCCGGATTTGACTCAGAAGGCCAAAGATGGAGGCGTGGACATGATACAAACCTATGTGTTTTGGGATGGGCAAGACCCAAGCCCAGGAAAGGTTAAGGCTGCAAAATGTGCACAGAAGCGTGTTGGATATACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

90

Amino Acids

10.07

Weight (kDa)

7.66

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 41 - 76 7e-08 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 215, 220
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AoxI GGCC 2 cut(s) 131, 150
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 152, 191
BciT130I CCWGG 1 cut(s) 216
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 220
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 215, 220
BseMII CTCAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 133, 152
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 215, 220
BsnI GGCC 2 cut(s) 133, 152
Bsp1286I GDGCHC 1 cut(s) 244
BspANI GGCC 2 cut(s) 133, 152
BspCNI CTCAG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 133, 152
BtsCI GGATG 1 cut(s) 202
CviAII CATG 1 cut(s) 172
CviJI RGCY 5 cut(s) 18, 133, 152, 213, 230
CviKI_1 RGCY 5 cut(s) 18, 133, 152, 213, 230
DdeI CTNAG 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 120
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 173, 186, 261
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 133, 152
HapII CCGG 1 cut(s) 134
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 40, 169, 242
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 3 cut(s) 40, 169, 242
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 104, 233, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 175
LpnPI CCDG 4 cut(s) 98, 147, 201, 228
Lsp1109I GCAGC 1 cut(s) 217
MboII GAAGA 2 cut(s) 39, 92
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 25, 155
MseI TTAA 3 cut(s) 107, 225, 268
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
SaqAI TTAA 3 cut(s) 107, 225, 268
SatI GCNGC 1 cut(s) 231
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 20, 185, 225
Sse9I AATT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 90
Tru1I TTAA 3 cut(s) 107, 225, 268
Tru9I TTAA 3 cut(s) 107, 225, 268
TseI GCWGC 1 cut(s) 230
VneI GTGCAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.