Rh5AG138800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016820
Physical Location & Seq
Forward (+)
14403074 .. 14405170
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG138800.1

Sequence Viewer

Length: 606 bp
ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGATTCATCCATGGGATGCCTTGTATTTTGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCCTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCACGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAAAAGCCCCAAATGGGATTTGAAACAAGAAAGAAAAGAAGTACCTACTGGCTAGTATTGGTTGGGATGCGGTCTTATTTGATTGCAAAGAGTAAGGAAGGCAGGGCGGATGTGATCCAGACTTATGCATTTTGGAGAGGTCATAAGCCCCAGAGAGGACAGGTGTGCCATGAGTTTTTGTCCACAGCTAGTCCGGGTATTGATATTCATTCTGAACAACTTGTTCAATACAACTTTGAAGGGAGATATGATATCGTCAAGTTTGTGAAGTTATTTGGAGAAATTTTGCAAGGTTTGGCTACTATTTTGGAGAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.65

Weight (kDa)

5.86

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 355, 392
AclWI GGATC 3 cut(s) 40, 126, 394
AcsI RAATTY 1 cut(s) 567
AfaI GTAC 2 cut(s) 328, 602
AfiI CCNNNNNNNGG 4 cut(s) 56, 268, 299, 440
AgsI TTSAA 3 cut(s) 308, 512, 524
AluBI AGCT 3 cut(s) 153, 265, 473
AluI AGCT 3 cut(s) 153, 265, 473
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 3 cut(s) 40, 126, 394
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 567
AspS9I GGNCC 4 cut(s) 54, 159, 242, 259
AsuC2I CCSGG 2 cut(s) 58, 480
AsuHPI GGTGA 2 cut(s) 221, 230
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 54, 159, 259
Bbv12I GWGCWC 1 cut(s) 233
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 2 cut(s) 58, 480
BfaI CTAG 4 cut(s) 147, 338, 474, 604
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 2 cut(s) 58, 480
Bme18I GGWCC 3 cut(s) 54, 159, 259
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 54, 159, 242, 259
BmrFI CCNGG 2 cut(s) 58, 480
BmsI GCATC 2 cut(s) 66, 342
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 58, 480
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 50, 70, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 268, 299, 440
Bse1I ACTGG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 50, 70, 255
BseGI GGATG 4 cut(s) 66, 81, 357, 400
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 4 cut(s) 56, 268, 299, 440
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 3 cut(s) 152, 227, 284
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 2 cut(s) 57, 479
BslI CCNNNNNNNGG 4 cut(s) 56, 268, 299, 440
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 5 cut(s) 45, 90, 112, 118, 399
Bsp19I CCATGG 2 cut(s) 70, 255
BspACI CCGC 2 cut(s) 355, 392
BspANI GGCC 1 cut(s) 244
BspPI GGATC 3 cut(s) 40, 126, 394
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 50, 70, 255
BssMI GATC 5 cut(s) 45, 90, 112, 118, 399
BssT1I CCWWGG 2 cut(s) 70, 255
Bst4CI ACNGT 2 cut(s) 54, 182
BstDSI CCRYGG 3 cut(s) 50, 70, 255
BstF5I GGATG 4 cut(s) 66, 81, 357, 400
BstKTI GATC 5 cut(s) 48, 93, 115, 121, 402
BstMBI GATC 5 cut(s) 45, 90, 112, 118, 399
BstSCI CCNGG 2 cut(s) 56, 478
BsuRI GGCC 1 cut(s) 244
BtgI CCRYGG 3 cut(s) 50, 70, 255
BtsCI GGATG 4 cut(s) 66, 81, 357, 400
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 4 cut(s) 54, 159, 242, 259
CpoI CGGWCCG 1 cut(s) 54
Csp6I GTAC 2 cut(s) 327, 601
CspI CGGWCCG 1 cut(s) 54
CviAII CATG 3 cut(s) 71, 256, 455
CviJI RGCY 8 cut(s) 153, 244, 265, 292, 337, 433, 473, 584
CviKI_1 RGCY 8 cut(s) 153, 244, 265, 292, 337, 433, 473, 584
CviQI GTAC 2 cut(s) 327, 601
DpnI GATC 5 cut(s) 47, 92, 114, 120, 401
DpnII GATC 5 cut(s) 45, 90, 112, 118, 399
DraI TTTAAA 1 cut(s) 238
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 70, 255
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 3 cut(s) 54, 159, 259
Eco88I CYCGRG 1 cut(s) 154
EcoO109I RGGNCCY 2 cut(s) 159, 242
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 2 cut(s) 70, 255
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 70, 255
FaeI CATG 3 cut(s) 74, 259, 458
FaiI YATR 7 cut(s) 44, 72, 257, 411, 429, 456, 534
FatI CATG 3 cut(s) 70, 255, 454
FbaI TGATCA 1 cut(s) 112
FokI GGATG 4 cut(s) 53, 88, 364, 407
FspBI CTAG 4 cut(s) 147, 338, 474, 604
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 57, 479
Hin1II CATG 3 cut(s) 74, 259, 458
HinfI GANTC 3 cut(s) 63, 143, 188
HpaII CCGG 2 cut(s) 57, 479
HphI GGTGA 2 cut(s) 221, 230
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 205, 228, 499
Hpy188III TCNNGA 2 cut(s) 116, 403
Hpy8I GTNNAC 1 cut(s) 468
Hpy99I CGWCG 3 cut(s) 126, 169, 205
HpyAV CCTTC 2 cut(s) 377, 518
HpyCH4III ACNGT 2 cut(s) 54, 182
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 371, 413, 574
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 3 cut(s) 74, 259, 458
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 45, 90, 112, 118, 399
LweI GCATC 2 cut(s) 66, 342
MaeI CTAG 4 cut(s) 147, 338, 474, 604
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 47, 92, 114, 120, 401
MboI GATC 5 cut(s) 45, 90, 112, 118, 399
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 567
MlyI GAGTC 2 cut(s) 137, 197
MmeI TCCRAC 2 cut(s) 114, 183
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 1 cut(s) 237
MspI CCGG 2 cut(s) 57, 479
MspR9I CCNGG 2 cut(s) 58, 480
NciI CCSGG 2 cut(s) 58, 480
NcoI CCATGG 2 cut(s) 70, 255
NdeII GATC 5 cut(s) 45, 90, 112, 118, 399
NlaIII CATG 3 cut(s) 74, 259, 458
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 56
PleI GAGTC 2 cut(s) 137, 196
PpsI GAGTC 2 cut(s) 137, 196
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
PspPI GGNCC 4 cut(s) 54, 159, 242, 259
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 154
RsaI GTAC 2 cut(s) 328, 602
RsaNI GTAC 2 cut(s) 327, 601
Rsr2I CGGWCCG 1 cut(s) 54
RsrII CGGWCCG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 5 cut(s) 45, 90, 112, 118, 399
Sau96I GGNCC 4 cut(s) 54, 159, 242, 259
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 2 cut(s) 137, 197
ScrFI CCNGG 2 cut(s) 58, 480
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 2 cut(s) 66, 342
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 3 cut(s) 54, 159, 259
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 154, 266
SmoI CTYRAG 2 cut(s) 154, 266
Sse9I AATT 1 cut(s) 567
SsiI CCGC 2 cut(s) 355, 392
SspMI CTAG 4 cut(s) 147, 338, 474, 604
StyD4I CCNGG 2 cut(s) 56, 478
StyI CCWWGG 2 cut(s) 70, 255
TaaI ACNGT 2 cut(s) 54, 182
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 567
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 55, 482
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 54, 159, 259
XapI RAATTY 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 4 cut(s) 147, 338, 474, 604
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.