FvH4_6g25680

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016820
Physical Location & Seq
Forward (+)
19652621 .. 19653271
651 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25680.t1

Sequence Viewer

Length: 282 bp
ATGCCGAACGTGGCGGATTCAGGGTTGTTGGGTTTTGCTGTGAGGAAGAGAATGGAATATTTGTTAATATTTTTTTGGGCTGAGACAGGAGGAAATATGGGTTTTCTAATCGATTTTGCCAGTTTCCTACTTCCTTGGATGTGGCCGGCTTTGACTCAGAAGGCCAAAGATGGAGGCTTGGACATGATACAAACCTATGTGTTTTGGGATGGGCAAGATCCAAGCCCAGGAAAGGTTAAGGCTGCAAAATGTGCACAGAAGCATGTTGAATATACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

94

Amino Acids

10.5

Weight (kDa)

6.71

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 45 - 81 3.7e-07 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 227, 232
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 77
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 143, 162
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 164, 203
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 134, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 232
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 134, 226
BseGI GGATG 2 cut(s) 144, 214
BseLI CCNNNNNNNGG 2 cut(s) 227, 232
BseMII CTCAG 2 cut(s) 72, 170
BseNI ACTGG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 2 cut(s) 145, 164
BshVI ATCGAT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 227, 232
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 145, 164
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 145, 164
BspCNI CTCAG 2 cut(s) 73, 169
BspDI ATCGAT 1 cut(s) 111
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 134, 226
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 81, 156
BstF5I GGATG 2 cut(s) 144, 214
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 2 cut(s) 145, 164
BsuTUI ATCGAT 1 cut(s) 111
BtsCI GGATG 2 cut(s) 144, 214
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 111
CviAII CATG 2 cut(s) 184, 263
CviJI RGCY 7 cut(s) 80, 145, 149, 164, 177, 225, 242
CviKI_1 RGCY 7 cut(s) 80, 145, 149, 164, 177, 225, 242
DdeI CTNAG 2 cut(s) 81, 156
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 2 cut(s) 187, 266
FaiI YATR 5 cut(s) 98, 185, 198, 264, 273
FatI CATG 2 cut(s) 183, 262
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 2 cut(s) 151, 221
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 145, 164
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 187, 266
HinfI GANTC 2 cut(s) 17, 154
HpaII CCGG 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 245, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 81, 156
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 187, 266
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 6, 72, 133, 159, 213, 240
Lsp1109I GCAGC 1 cut(s) 229
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 256
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 3 cut(s) 36, 83, 167
MroNI GCCGGC 1 cut(s) 145
MseI TTAA 3 cut(s) 65, 237, 280
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 251
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 187, 266
NspI RCATGY 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 217
SaqAI TTAA 3 cut(s) 65, 237, 280
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 256
SetI ASST 3 cut(s) 12, 197, 237
SsiI CCGC 1 cut(s) 14
SspI AATATT 2 cut(s) 59, 69
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 134
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 111
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 3 cut(s) 65, 237, 280
Tru9I TTAA 3 cut(s) 65, 237, 280
TseI GCWGC 1 cut(s) 242
VneI GTGCAC 1 cut(s) 252
XceI RCATGY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.