Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016820

Physical Location & Seq

Genomic Coordinates Forward (+)

28726255 .. 28727550

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGATTCATCCATGGGATGCCTTGTATTTTGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCCTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCTCGTTTAAAGAGCCTTTGGACACCATGGACCAGCTTGAGGAGATGCGGTCTTATTTGATTGCAAAGAGTAAGGAAGGCGGGGCGGATGTGATCCAGACTTATGCATTTTGGAGCGGTCATAAGCCCCAGAGAGGACAGGGAGATATGATATCGTCAAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.35

Weight (kDa)

4.62

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016820)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10962 FvH4_6g25590 FvH4_6g25680
rosa_chinensis	RchiOBHm_Chr4g0408091 RchiOBHm_Chr7g0201151
rosa_laevigata	RLG00000034352
rosa_multiflora	Rmu_sc0003994.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039630 Rroxscaffold_3G00260570
rosa_rugosa	Rorug03G0115900
rosa_samantha	Rh3DG185400 Rh5AG138800 Rh5AG329900 Rh6CG180300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	345
AciI	CCGC	4 cut(s)	277, 309, 314, 345
AclWI	GGATC	3 cut(s)	40, 126, 316
AfiI	CCNNNNNNNGG	3 cut(s)	56, 268, 362
AluBI	AGCT	3 cut(s)	153, 231, 265
AluI	AGCT	3 cut(s)	153, 231, 265
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	40, 126, 316
Ama87I	CYCGRG	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	54, 159, 259
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	221, 230
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	3 cut(s)	54, 159, 259
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	3 cut(s)	54, 159, 259
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	54, 159, 259
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	2 cut(s)	66, 264
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	50, 70, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 268, 362
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	50, 70, 255
BseGI	GGATG	3 cut(s)	66, 81, 322
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	56, 268, 362
BseRI	GAGGAG	3 cut(s)	152, 227, 284
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	56, 268, 362
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	45, 90, 112, 118, 321
Bsp19I	CCATGG	2 cut(s)	70, 255
BspACI	CCGC	4 cut(s)	277, 309, 314, 345
BspPI	GGATC	3 cut(s)	40, 126, 316
BsrBI	CCGCTC	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	50, 70, 255
BssMI	GATC	5 cut(s)	45, 90, 112, 118, 321
BssT1I	CCWWGG	2 cut(s)	70, 255
Bst4CI	ACNGT	2 cut(s)	54, 182
BstDSI	CCRYGG	3 cut(s)	50, 70, 255
BstF5I	GGATG	3 cut(s)	66, 81, 322
BstKTI	GATC	5 cut(s)	48, 93, 115, 121, 324
BstMBI	GATC	5 cut(s)	45, 90, 112, 118, 321
BstSCI	CCNGG	1 cut(s)	56
BtgI	CCRYGG	3 cut(s)	50, 70, 255
BtsCI	GGATG	3 cut(s)	66, 81, 322
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	54, 159, 259
CpoI	CGGWCCG	1 cut(s)	54
CspI	CGGWCCG	1 cut(s)	54
CviAII	CATG	2 cut(s)	71, 256
CviJI	RGCY	5 cut(s)	153, 231, 244, 265, 355
CviKI_1	RGCY	5 cut(s)	153, 231, 244, 265, 355
DpnI	GATC	5 cut(s)	47, 92, 114, 120, 323
DpnII	GATC	5 cut(s)	45, 90, 112, 118, 321
DraI	TTTAAA	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	70, 255
Eco24I	GRGCYC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	54, 159, 259
Eco53kI	GAGCTC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	70, 255
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	70, 255
FaeI	CATG	2 cut(s)	74, 259
FaiI	YATR	6 cut(s)	44, 72, 257, 333, 351, 377
FatI	CATG	2 cut(s)	70, 255
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	3 cut(s)	53, 88, 329
FriOI	GRGCYC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	147
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	74, 259
HinfI	GANTC	3 cut(s)	63, 143, 188
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	221, 230
Hpy188I	TCNGA	2 cut(s)	205, 228
Hpy188III	TCNNGA	2 cut(s)	116, 325
Hpy99I	CGWCG	3 cut(s)	126, 169, 205
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	54, 182
HpyCH4V	TGCA	2 cut(s)	293, 335
Hsp92II	CATG	2 cut(s)	74, 259
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	45, 90, 112, 118, 321
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	6 cut(s)	70, 101, 275, 338, 353, 371
LweI	GCATC	2 cut(s)	66, 264
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	5 cut(s)	47, 92, 114, 120, 323
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	5 cut(s)	45, 90, 112, 118, 321
MhlI	GDGCHC	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	137, 197
MmeI	TCCRAC	2 cut(s)	114, 183
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	2 cut(s)	70, 255
NdeII	GATC	5 cut(s)	45, 90, 112, 118, 321
NlaIII	CATG	2 cut(s)	74, 259
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	56
PleI	GAGTC	2 cut(s)	137, 196
PpsI	GAGTC	2 cut(s)	137, 196
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	159
PspPI	GGNCC	3 cut(s)	54, 159, 259
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	154
Rsr2I	CGGWCCG	1 cut(s)	54
RsrII	CGGWCCG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	5 cut(s)	45, 90, 112, 118, 321
Sau96I	GGNCC	3 cut(s)	54, 159, 259
SchI	GAGTC	2 cut(s)	137, 197
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	155, 161, 225, 233, 267
SfaNI	GCATC	2 cut(s)	66, 264
Sfr274I	CTCGAG	1 cut(s)	154
SinI	GGWCC	3 cut(s)	54, 159, 259
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	154, 266
SmoI	CTYRAG	2 cut(s)	154, 266
SsiI	CCGC	4 cut(s)	277, 309, 314, 345
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	70, 255
TaaI	ACNGT	2 cut(s)	54, 182
TaqI	TCGA	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	3 cut(s)	54, 159, 259
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.