Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003994.1

Orthogroup ID

OG0016820

Physical Location & Seq

Genomic Coordinates Reverse (-)

54342 .. 54881

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003994.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgccaaccacagtgactgacgtcgaggcagagccaagacagaggtttttcgctgccacaggcccacagcggattcgggaacaagttcttccgccggaagaggaaaaatcaaattgctggagtgcctcgctggaaatgcattggagctattatagtcaatggaaagagaaggattctcatttcatggtttattcattgccccaaagcatacctgagatgtggccggattttattcagaaggccaaagatggaggcttggatgtgatacagacttatgtgttctggaatgggcatgaacctagcccaggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

104

Amino Acids

12.16

Weight (kDa)

5.08

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016820)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10962 FvH4_6g25590 FvH4_6g25680
rosa_chinensis	RchiOBHm_Chr4g0408091 RchiOBHm_Chr7g0201151
rosa_laevigata	RLG00000034352
rosa_multiflora	Rmu_sc0003994.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039630 Rroxscaffold_3G00260570
rosa_rugosa	Rorug03G0115900
rosa_samantha	Rh3DG185400 Rh5AG138800 Rh5AG329900 Rh6CG180300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AciI	CCGC	2 cut(s)	70, 92
AcoI	YGGCCR	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	61, 221, 240
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	306
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	3 cut(s)	63, 223, 242
BsiSI	CCGG	2 cut(s)	95, 224
BslI	CCNNNNNNNGG	1 cut(s)	305
BsnI	GGCC	3 cut(s)	63, 223, 242
BspACI	CCGC	2 cut(s)	70, 92
BspANI	GGCC	3 cut(s)	63, 223, 242
BspCNI	CTCAG	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	63, 223, 242
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	2 cut(s)	184, 293
CviJI	RGCY	7 cut(s)	34, 63, 147, 223, 242, 255, 303
CviKI_1	RGCY	7 cut(s)	34, 63, 147, 223, 242, 255, 303
DdeI	CTNAG	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	141
FaeI	CATG	2 cut(s)	187, 296
FaiI	YATR	5 cut(s)	153, 185, 209, 276, 294
FatI	CATG	2 cut(s)	183, 292
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	63, 223, 242
HapII	CCGG	2 cut(s)	95, 224
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	187, 296
HinfI	GANTC	2 cut(s)	73, 173
HpaII	CCGG	2 cut(s)	95, 224
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	77, 283
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	163, 232
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	187, 296
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	45, 103, 108, 116, 225, 237, 268, 291
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	80, 110
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	5 cut(s)	19, 36, 94, 136, 245
Mph1103I	ATGCAT	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	95, 224
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	187, 296
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	73, 173
PkrI	GCNGC	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	5 cut(s)	24, 47, 149, 214, 301
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	70, 92
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	73, 173
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	172, 183, 309
TspRI	CASTG	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.