Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016820

Physical Location & Seq

Genomic Coordinates Reverse (-)

18771440 .. 18771960

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCGGTCTTATTTGATTGCAAAGAGTAAGGAAGGCGGGGCGGATGTGATCCAGACTTATGCATTTTGGAGCGGTCATAAGCCCCAGAGAGGACAGGTGTGCCATGAGTTTTTGTCCACAGCTAGTCCGGGGCGATTGCCTTGGAGATATGATATCGTCAAGTTTGTGAAGTTAGTGGGAGCTAGTGAACTCTATCTCCATCTTTGCATAGGGCTCTACGTCTGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009505 GO:0015925 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

76

Amino Acids

8.56

Weight (kDa)

9.15

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	5 - 76	8.4e-11	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016820)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g10962 FvH4_6g25590 FvH4_6g25680
rosa_chinensis	RchiOBHm_Chr4g0408091 RchiOBHm_Chr7g0201151
rosa_laevigata	RLG00000034352
rosa_multiflora	Rmu_sc0003994.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039630 Rroxscaffold_3G00260570
rosa_rugosa	Rorug03G0115900
rosa_samantha	Rh3DG185400 Rh5AG138800 Rh5AG329900 Rh6CG180300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	4 cut(s)	4, 36, 41, 72
AclWI	GGATC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	2 cut(s)	122, 182
AluI	AGCT	2 cut(s)	122, 182
AlwI	GGATC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	216
BccI	CCATC	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	129
BfaI	CTAG	2 cut(s)	123, 183
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	128, 140
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	128, 140
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	4 cut(s)	4, 36, 41, 72
BspPI	GGATC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	128, 140
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	227
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	4 cut(s)	82, 122, 182, 214
CviKI_1	RGCY	4 cut(s)	82, 122, 182, 214
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	107
FaiI	YATR	5 cut(s)	60, 78, 105, 150, 209
FatI	CATG	1 cut(s)	103
FauI	CCCGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	123, 183
GlaI	GCGC	1 cut(s)	226
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	117, 188
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	117, 188
HpyAV	CCTTC	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	20, 62, 207
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	69, 179
LpnPI	CCDG	4 cut(s)	65, 80, 98, 141
MaeI	CTAG	2 cut(s)	123, 183
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	50
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	64
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	4 cut(s)	99, 124, 184, 222
SsiI	CCGC	4 cut(s)	4, 36, 41, 72
SspMI	CTAG	2 cut(s)	123, 183
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	222
XspI	CTAG	2 cut(s)	123, 183
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.