Rorug03G0115900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016820
Physical Location & Seq
Forward (+)
9414990 .. 9415749
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0115900.1

Sequence Viewer

Length: 537 bp
ATGTGGAACTCGGAGCGGCTGGTGCAGCAGCTTTTCAAGATGATCACTCCTATATGGTTAGAGTATGACGGGATTGGTGATGTACATGCTCCTCCGTTGAAGACACTGGAAACTTGGGTTAGAGTGCGTGGGCTTGCACCGCGGCTACGCAAGAAGGTTGCGCTCTCGCTGGTCGGCTCTTCAATGGGTTGGAGGAAGGAGGAGGAGCAGTGGGTTCAGCTTGAGTTGGATATTCGACAATGGGTTCGGGTTTTGAAATCTTTCTCTTTTTCATCGGAGGTTGAACCTGAATTATTGTTCAATTTTGAACGAATCCGAGGCTTTTGCAAGGTATGTGGACTGTTTCAACATGATGCAATTGGTTGTGGTAAGTTGTTTTTGCTTGAGAAAGAGGAGAAGGAGGTACAGGGGCTTGCAGTCGCTTTAAAGAGGTTGAACCTCATTTCGGTGGCAACGCCAAGAGCAGCTGGCATGGGTGTTCAGGAAGGCCAGGCGCTACTGGCATGTGAAGCGACGGCAAGAGGCCAGACGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.19

Weight (kDa)

8.73

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 76 - 122 1.4e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AccII CGCG 1 cut(s) 142
AciI CCGC 3 cut(s) 16, 140, 142
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 2 cut(s) 84, 405
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 9 cut(s) 37, 100, 183, 256, 284, 301, 308, 347, 436
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 3 cut(s) 31, 220, 467
AluI AGCT 3 cut(s) 31, 220, 467
AoxI GGCC 2 cut(s) 487, 523
ApeKI GCWGC 3 cut(s) 25, 28, 464
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 163, 496
AsuHPI GGTGA 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 37, 40, 476
BceAI ACGGC 2 cut(s) 517, 531
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 5 cut(s) 17, 26, 29, 143, 465
BlsI GCNGC 5 cut(s) 18, 27, 30, 144, 466
Bme1390I CCNGG 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 242, 404
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 140, 316
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 111, 504
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 2 cut(s) 140, 316
BseLI CCNNNNNNNGG 1 cut(s) 445
BseNI ACTGG 2 cut(s) 111, 504
BseRI GAGGAG 4 cut(s) 81, 215, 218, 407
BseXI GCAGC 3 cut(s) 37, 40, 476
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 489, 525
BslI CCNNNNNNNGG 1 cut(s) 445
BsnI GGCC 2 cut(s) 489, 525
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 3 cut(s) 16, 140, 142
BspANI GGCC 2 cut(s) 489, 525
BspFNI CGCG 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 111, 504
BssECI CCNNGG 2 cut(s) 140, 316
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 82
BstC8I GCNNGC 3 cut(s) 135, 414, 469
BstDSI CCRYGG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 163, 496
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 5 cut(s) 22, 25, 139, 500, 509
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 2 cut(s) 89, 507
BstSCI CCNGG 1 cut(s) 489
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 37, 40, 476
BstV2I GAAGAC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 489, 525
BtgI CCRYGG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 104, 215
Cac8I GCNNGC 3 cut(s) 135, 414, 469
CfoI GCGC 2 cut(s) 163, 496
Cfr42I CCGCGG 1 cut(s) 143
Csp6I GTAC 2 cut(s) 83, 404
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 4 cut(s) 86, 350, 472, 504
CviQI GTAC 2 cut(s) 83, 404
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 489
FaeI CATG 4 cut(s) 89, 353, 475, 507
FaiI YATR 8 cut(s) 53, 55, 66, 87, 334, 351, 473, 505
FatI CATG 4 cut(s) 85, 349, 471, 503
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 17, 26, 29, 143, 465
Fsp4HI GCNGC 5 cut(s) 17, 26, 29, 143, 465
GlaI GCGC 2 cut(s) 162, 495
GluI GCNGC 5 cut(s) 17, 26, 29, 143, 465
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 489, 525
HhaI GCGC 2 cut(s) 163, 496
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 4 cut(s) 89, 353, 475, 507
Hin6I GCGC 2 cut(s) 161, 494
HinP1I GCGC 2 cut(s) 161, 494
HinfI GANTC 1 cut(s) 312
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 3 cut(s) 13, 277, 317
Hpy188III TCNNGA 2 cut(s) 37, 482
Hpy8I GTNNAC 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 4 cut(s) 148, 190, 391, 479
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 25, 137, 327, 356, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 25, 139, 500, 509
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 4 cut(s) 89, 353, 475, 507
HspAI GCGC 2 cut(s) 161, 494
Ksp22I TGATCA 1 cut(s) 42
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 42
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 3 cut(s) 13, 94, 205
Lsp1109I GCAGC 3 cut(s) 37, 40, 476
LweI GCATC 1 cut(s) 343
MalI GATC 1 cut(s) 44
MbiI CCGCTC 1 cut(s) 16
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 112, 171
MfeI CAATTG 1 cut(s) 357
MluCI AATT 3 cut(s) 290, 301, 357
MmeI TCCRAC 2 cut(s) 170, 207
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 142, 467
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 5 cut(s) 22, 25, 139, 500, 509
NdeII GATC 1 cut(s) 42
NlaIII CATG 4 cut(s) 89, 353, 475, 507
NspI RCATGY 2 cut(s) 89, 507
PciSI GCTCTTC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 5 cut(s) 18, 27, 30, 144, 466
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 84, 405
RsaNI GTAC 2 cut(s) 83, 404
RseI CAYNNNNRTG 1 cut(s) 446
SacII CCGCGG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 5 cut(s) 17, 26, 29, 143, 465
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 491
SfaNI GCATC 1 cut(s) 343
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 221, 383
SmoI CTYRAG 2 cut(s) 221, 383
Sse9I AATT 3 cut(s) 290, 301, 357
SsiI CCGC 3 cut(s) 16, 140, 142
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 235
TasI AATT 3 cut(s) 290, 301, 357
TatI WGTACW 1 cut(s) 82
TauI GCSGC 2 cut(s) 19, 145
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 2 cut(s) 111, 215
TseI GCWGC 3 cut(s) 25, 28, 464
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 111, 215
XceI RCATGY 2 cut(s) 89, 507
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.