FvH4_6g25590

beta-galactosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016820
Physical Location & Seq
Forward (+)
19528201 .. 19531830
3630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25590.t1

Sequence Viewer

Length: 324 bp
ATGGCTCGACTGCTGAGGGTTAAGTTCCATCTCTACAAGATGTGGCCGGATTTGACTTCGAAGGCCAAAGATGGAGTCTTGGACATGATACAAACCTATGTGTTTTGGGATGGGCAAGATCCAAGCCCAGGAAAGGCGCTGGCGCCGACTTACTGTTTGCGCCTGGTGTTGGGCCTTGATATTCGCTGGTCTCTTGGCTCTTGCCGTGTGTTATTTCTCATCTTCTGGCGTCTTCTTGCTCTCCCGAAACTTCCAGAGATAGATGCAAGAGCCATTGACTGCCGTGCAAATTCCTCTTTTCAGAGGATCTACGTTGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

108

Amino Acids

12.39

Weight (kDa)

9.55

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AclWI GGATC 2 cut(s) 113, 314
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 143, 229
AfiI CCNNNNNNNGG 3 cut(s) 128, 133, 169
AjnI CCWGG 2 cut(s) 127, 162
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 2 cut(s) 113, 314
AoxI GGCC 3 cut(s) 44, 63, 172
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 139, 171
AspLEI GCGC 3 cut(s) 139, 145, 162
AspS9I GGNCC 1 cut(s) 172
AsuII TTCGAA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 14
BccI CCATC 3 cut(s) 36, 65, 104
BceAI ACGGC 2 cut(s) 189, 267
BciT130I CCWGG 2 cut(s) 129, 164
BcoDI GTCTC 1 cut(s) 195
BfoI RGCGCY 2 cut(s) 140, 146
Bme1390I CCNGG 2 cut(s) 129, 164
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 129, 164
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 143, 229
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 133, 169
BseBI CCWGG 2 cut(s) 129, 164
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 3 cut(s) 128, 133, 169
BseMII CTCAG 1 cut(s) 5
BshFI GGCC 3 cut(s) 46, 65, 174
BshNI GGYRCC 1 cut(s) 142
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 128, 133, 169
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 3 cut(s) 46, 65, 174
Bso31I GGTCTC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 59
Bsp143I GATC 2 cut(s) 118, 306
BspANI GGCC 3 cut(s) 46, 65, 174
BspCNI CTCAG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 113, 314
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 118, 306
BssNI GRCGYC 2 cut(s) 143, 229
Bst2UI CCWGG 2 cut(s) 129, 164
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 143, 229
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 2 cut(s) 140, 146
BstHHI GCGC 3 cut(s) 139, 145, 162
BstKTI GATC 2 cut(s) 121, 309
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 118, 306
BstNI CCWGG 2 cut(s) 129, 164
BstSCI CCNGG 2 cut(s) 127, 162
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 118, 306
BstYI RGATCY 2 cut(s) 118, 306
BsuRI GGCC 3 cut(s) 46, 65, 174
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 3 cut(s) 139, 145, 162
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 218
CviAII CATG 1 cut(s) 85
CviJI RGCY 7 cut(s) 5, 46, 65, 126, 174, 198, 272
CviKI_1 RGCY 7 cut(s) 5, 46, 65, 126, 174, 198, 272
DdeI CTNAG 1 cut(s) 14
DinI GGCGCC 1 cut(s) 144
DpnI GATC 2 cut(s) 120, 308
DpnII GATC 2 cut(s) 118, 306
EaeI YGGCCR 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 127, 162
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 99
FatI CATG 1 cut(s) 84
FokI GGATG 1 cut(s) 122
GlaI GCGC 3 cut(s) 138, 144, 161
HaeII RGCGCY 2 cut(s) 140, 146
HaeIII GGCC 3 cut(s) 46, 65, 174
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 139, 145, 162
Hin1I GRCGYC 2 cut(s) 143, 229
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 3 cut(s) 137, 143, 160
HinP1I GCGC 3 cut(s) 137, 143, 160
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 303, 323
Hpy188III TCNNGA 2 cut(s) 244, 254
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 266, 287
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 2 cut(s) 143, 229
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 3 cut(s) 137, 143, 160
KasI GGCGCC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 118, 306
LpnPI CCDG 9 cut(s) 60, 114, 125, 141, 149, 172, 176, 211, 267
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 312
MalI GATC 2 cut(s) 120, 308
MboI GATC 2 cut(s) 118, 306
MboII GAAGA 2 cut(s) 214, 224
MflI RGATCY 2 cut(s) 118, 306
MluCI AATT 1 cut(s) 289
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 3 cut(s) 9, 297, 304
MseI TTAA 1 cut(s) 21
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 129, 164
MvaI CCWGG 2 cut(s) 129, 164
NarI GGCGCC 1 cut(s) 143
NdeII GATC 2 cut(s) 118, 306
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 144
NspV TTCGAA 1 cut(s) 59
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 127, 162
PspGI CCWGG 2 cut(s) 127, 162
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 172
PsuI RGATCY 2 cut(s) 118, 306
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 2 cut(s) 118, 306
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 129, 164
SetI ASST 2 cut(s) 98, 315
SfaNI GCATC 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 59
Sse9I AATT 1 cut(s) 289
SspDI GGCGCC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 127, 162
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 7, 59
TasI AATT 1 cut(s) 289
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
XapI RAATTY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.