FvH4_4g11723

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015139
Physical Location & Seq
Forward (+)
15469905 .. 15472834
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11723.t1

Sequence Viewer

Length: 2340 bp
ATGTCGTTGCCAAGAATGTCAAAGACTCATCAAAACCTCTGGAAATCAATAAACCCCAAAAACCCAACAGCCTTCTCTTCACTCATCTCCACCAAAACCCACACCCCCTCATCAAACCCCATTTCCACCAAAACCCACGCCGACCCATTTCTTCCTAACCCAGACGTCGGCCACGTCGCCGACGGCCTCATCTCCATCTTCACCAACCAACCTTTCTCCCCAGACAACCCAAATTTGAAGCATTTTGCTTCAAGAATCACCCCAAAAGCAGTCGAATGTGTCCTCAATGGCCTCAAGAGCTGGAAAGTAGCACACTTGTTCTTCACATGGGCATCCAACCAATCTGGGTACACCCACAATTGCTACACTTACAATGCCATGGCTTCACACCTATCACGTGCTCGACAAAATGCCCCAATGAAGGCCTTGGCCATGGAGCTTGTGGGTTCCAATTGTTATATGACCCCTGGCGCTCTGGGGTTCTTTCTAAGATGCTTGGGGAGTGTGGCGTTGGTTGAAGAAGCCAACATTTTGTTTGATGAGATTTGTAAAAAGGGTCTTTGTGTTCCTAATGGATATAGCTATAACTGTTTGTTGGAGGCTGTGTCTAAGTCAGGTTCGATTGAATTGGTAGAGAAGAGAATGAAGGAAATGAGGGATGCTGGTTGGGATTTCGATAGGTACACGTTGACTGCGGCGTTAAAGGTTTATTGCAATGCAGGGAAGTTCGAAAAGGCTATGGAGGTTTATGATGAAATGCATGAGAAGGGCTGGGTTGATGCTCATGCTATGTGCATTTTGGTGTTGTATTTGTGCAAGTGGGGTGAGGTTGACAAGGCTTTTGATTTGATTGAAAGAATGGAGCATCAGAATCTTGGGTTGAATGAGAAGACATTTCGTGTTTTGATTCATGGGTTTGTGAAGGAGTCCAGAGTGGATAAGGCTCTTCATTTGTTTGATAAGATGCAGAAGACAGGTTTCTCTGTTGATGTTTCTCTTTATGATGTACTGATTGGAGGGCTCTGTGAGAATAGAGAGATTGAGAAAGCCTTGTCTATGTATTCGGAAATGAAGGATTTGGGAATCCAGTCTGATGTTAGAATCCTTAGGAAGCTCATATTAGCTTTTTCGGATGAAAGGGAAATGATACGGATGCTTGAGGAAAGTCGGGAAGATTTGAATGAAGAGGGTATGCTTATGCTTTGCAGTTCTGTGCTGAATGGTCTGGTTGATAACGGCTCCGTTGACAGAGCTTATCAACTGCTTCAGGCAATGATGAAAAACGAATCTGATGTTGATCCAGCAGTAAAGAAAAAGGTTCGTCCTACCACTCTTTCTTTTGAAACTGTTATTGATGGCCTTCTAAAATTTGGTAAGTTGCCTATGGCGTTAAGCCTGTTGGAAGACGTGAATCGGATAGGGTGTAAAGCAAATGTTAGAATCTACAATAATGTAATTCATGAACTGTGCAAATCAAATAAATTGGAGGAAAGTTTTAAACTTCTGAGAGAGATGGAGCAATCTGGAATTGAACCCACACATTTTACCCATAACTCAATATTTGGTTGCCTCTGTAGAAGAGAGGATGTTCAAGGAAGCCTTAACCTTTTGAAGGAGATGCGTGTTTGTGGACATCAGCCATGGGAAAAACATTCCAGCTTGCTCGTGAAGCAGTTGTGCCAACACGGGAAGGCAGCTGAAGCTTGTCATTTTCTTGATAAAATGGTTGAAGTGAATTTTCTCCCTGGTCTAGTTTCCTATTCTACGGTTATTCATGGATTGCTCAAAAATCAAGAAGTAGATCAAGCTTTACGGCTATTTCAGGACATCTGTGCTGATGGTTATTGTCCTGATGCGGTTTTCTATAACATATTGATAAATGGGCTATGTAAGGCCAAAAGAGTTTCGGAAGCAGAAAACTTTCTGATTGAGATGGTGATGAAGGGTCTTGTTCCCTCAGTTGTAACCTGCAATCTGCTGATAAATGGGTATTGTAAAAATGGTGATGTAGATAAAGCCATGACTTGCCTCTCCAGGATCTTTGGTGAACATAGAGAACCTAACGTGATTACATACACAACAGTAATAGATGGATTATGCAAGGCTGGAAGGATTGATGATGCTCTTGTGCTTTGGAACGACATGGCAAAGAAAGGATGTGCTCCAAACAGAATTACTTTTATGGCTCTTATCAATGGTCTCTGCGAGTGTGGTAAGCCTGTTGAGGCTTTAGCTTATCTTCATGAGATGGAAGAGAAGGAAATGAAACCCGAGATACCTGTATATTCAGCAGTAATAAGTGCTTTAGTCTCTAACCAAAACCTTCCTCCTGCCACTTGA

Protein Analysis

780

Amino Acids

87.43

Weight (kDa)

6.39

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 190 - 239 7.1e-06 PPR repeat family
TPR_24 PF23276 199 - 321 9.2e-08 Fungal tetratrico peptide repeats
PPR PF01535 229 - 257 5.3e-06 PPR repeat
PPR_long PF17177 245 - 392 2.4e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 263 - 308 2.6e-07 PPR repeat family
TPR_24 PF23276 271 - 356 2.9e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 330 - 366 1.8e-07 PPR repeat family
PPR_3 PF13812 465 - 523 1e-07 Pentatricopeptide repeat domain
PPR_long PF17177 467 - 577 4e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 474 - 506 1.4e-08 PPR repeat
PPR_2 PF13041 478 - 526 5.4e-14 PPR repeat family
PPR_1 PF12854 613 - 646 1.9e-11 PPR repeat
PPR_2 PF13041 617 - 656 7e-10 PPR repeat family
PPR PF01535 620 - 650 1e-06 PPR repeat
PPR_3 PF13812 643 - 696 2.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 648 - 674 6.4e-09 PPR repeat
PPR_2 PF13041 652 - 701 3.1e-15 PPR repeat family
PPR PF01535 655 - 679 4.9e-06 PPR repeat
PPR_3 PF13812 686 - 732 3.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 686 - 715 4e-13 PPR repeat
PPR_2 PF13041 687 - 735 4.4e-19 PPR repeat family
PPR PF01535 690 - 720 2e-08 PPR repeat
TPR_24 PF23276 690 - 778 3.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 711 - 771 6.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 718 - 751 9.8e-08 PPR repeat
PPR_2 PF13041 725 - 770 2.9e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08310 AT5G08310
fragaria_vesca FvH4_4g11722 FvH4_4g11723
prunus_persica Prupe.7G271800_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0408911
rosa_laevigata RLG00000008609
rosa_multiflora Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001
rosa_roxburghii Rroxscaffold_5G00353290
rosa_rugosa Rorug04G0088600
rosa_samantha Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800
rosa_wichuraiana Rw4G012550

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 1976
AciI CCGC 2 cut(s) 695, 1856
AclWI GGATC 2 cut(s) 1292, 2045
AcoI YGGCCR 2 cut(s) 169, 429
AcsI RAATTY 3 cut(s) 232, 1367, 1735
AcuI CTGAAG 2 cut(s) 1250, 1719
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 350, 683, 1008
AfiI CCNNNNNNNGG 3 cut(s) 167, 421, 1612
AflIII ACRYGT 1 cut(s) 684
AjiI CACGTC 2 cut(s) 175, 1408
AjnI CCWGG 3 cut(s) 466, 1744, 2033
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
Alw21I GWGCWC 2 cut(s) 403, 2164
Alw26I GTCTC 2 cut(s) 2204, 2314
AlwI GGATC 2 cut(s) 1292, 2045
Ama87I CYCGRG 1 cut(s) 2270
AoxI GGCC 7 cut(s) 169, 184, 289, 423, 429, 1357, 1893
ApeKI GCWGC 1 cut(s) 1694
ApoI RAATTY 3 cut(s) 232, 1367, 1735
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 1920
AspLEI GCGC 1 cut(s) 473
AsuHPI GGTGA 6 cut(s) 193, 250, 836, 1948, 2015, 2057
AsuII TTCGAA 1 cut(s) 729
AvaI CYCGRG 1 cut(s) 2270
AxyI CCTNAGG 1 cut(s) 1106
BalI TGGCCA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 1023
BauI CACGAG 1 cut(s) 1664
BbrPI CACGTG 1 cut(s) 398
BbsI GAAGAC 3 cut(s) 896, 977, 1410
Bbv12I GWGCWC 2 cut(s) 403, 2164
BbvI GCAGC 1 cut(s) 1706
BccI CCATC 7 cut(s) 203, 1349, 1507, 1832, 1927, 2084, 2242
BceAI ACGGC 3 cut(s) 199, 1252, 1829
BciT130I CCWGG 3 cut(s) 468, 1746, 2035
BcoDI GTCTC 2 cut(s) 2204, 2314
BfaI CTAG 1 cut(s) 1751
BfmI CTRYAG 1 cut(s) 1573
BfoI RGCGCY 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 1976
BisI GCNGC 2 cut(s) 696, 1695
BlsI GCNGC 2 cut(s) 697, 1696
Bme1390I CCNGG 3 cut(s) 468, 1746, 2035
BmeT110I CYCGRG 1 cut(s) 2270
BmgBI CACGTC 2 cut(s) 175, 1408
BmiI GGNNCC 2 cut(s) 448, 1240
BmrFI CCNGG 3 cut(s) 468, 1746, 2035
BpiI GAAGAC 3 cut(s) 896, 977, 1410
BpmI CTGGAG 1 cut(s) 2017
Bpu14I TTCGAA 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 278, 1178
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 1296
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 2204
BsaJI CCNNGG 6 cut(s) 378, 426, 432, 466, 1640, 1744
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 421, 1612
Bse1I ACTGG 1 cut(s) 1087
Bse21I CCTNAGG 1 cut(s) 1106
Bse3DI GCAATG 2 cut(s) 721, 1278
Bse8I GATNNNNATC 1 cut(s) 1296
BseBI CCWGG 3 cut(s) 468, 1746, 2035
BseDI CCNNGG 6 cut(s) 378, 426, 432, 466, 1640, 1744
BseGI GGATG 6 cut(s) 332, 664, 1138, 1158, 1591, 2162
BseJI GATNNNNATC 1 cut(s) 1296
BseLI CCNNNNNNNGG 3 cut(s) 167, 421, 1612
BseMI GCAATG 2 cut(s) 721, 1278
BseMII CTCAG 2 cut(s) 1496, 1971
BseNI ACTGG 1 cut(s) 1087
BseXI GCAGC 1 cut(s) 1706
BseYI CCCAGC 1 cut(s) 771
BshFI GGCC 7 cut(s) 171, 186, 291, 425, 431, 1359, 1895
BsiHKAI GWGCWC 2 cut(s) 403, 2164
BsiHKCI CYCGRG 1 cut(s) 2270
BslI CCNNNNNNNGG 3 cut(s) 167, 421, 1612
BsmAI GTCTC 2 cut(s) 2204, 2314
BsnI GGCC 7 cut(s) 171, 186, 291, 425, 431, 1359, 1895
Bso31I GGTCTC 1 cut(s) 2204
BsoBI CYCGRG 1 cut(s) 2270
Bsp119I TTCGAA 1 cut(s) 729
Bsp1286I GDGCHC 3 cut(s) 403, 1023, 2164
Bsp143I GATC 3 cut(s) 1297, 1801, 2037
Bsp19I CCATGG 3 cut(s) 378, 432, 1640
BspACI CCGC 2 cut(s) 695, 1856
BspANI GGCC 7 cut(s) 171, 186, 291, 425, 431, 1359, 1895
BspCNI CTCAG 2 cut(s) 1497, 1970
BspHI TCATGA 2 cut(s) 1459, 2242
BspLI GGNNCC 2 cut(s) 448, 1240
BspMI ACCTGC 1 cut(s) 1976
BspPI GGATC 2 cut(s) 1292, 2045
BspQI GCTCTTC 1 cut(s) 951
BspT104I TTCGAA 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 2204
BsrDI GCAATG 2 cut(s) 721, 1278
BsrI ACTGG 1 cut(s) 1087
BssECI CCNNGG 6 cut(s) 378, 426, 432, 466, 1640, 1744
BssMI GATC 3 cut(s) 1297, 1801, 2037
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 1664
BssT1I CCWWGG 4 cut(s) 378, 426, 432, 1640
Bst2BI CACGAG 1 cut(s) 1664
Bst2UI CCWGG 3 cut(s) 468, 1746, 2035
Bst4CI ACNGT 5 cut(s) 590, 1348, 1467, 1768, 2083
Bst6I CTCTTC 6 cut(s) 82, 632, 951, 1179, 1573, 2247
BstACI GRCGYC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 398
BstBI TTCGAA 1 cut(s) 729
BstC8I GCNNGC 1 cut(s) 1661
BstDEI CTNAG 5 cut(s) 488, 609, 1106, 1505, 1957
BstDSI CCRYGG 3 cut(s) 378, 432, 1640
BstENI CCTNNNNNAGG 1 cut(s) 1610
BstF5I GGATG 6 cut(s) 332, 664, 1138, 1158, 1591, 2162
BstH2I RGCGCY 1 cut(s) 474
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 3 cut(s) 1300, 1804, 2040
BstMAI GTCTC 2 cut(s) 2204, 2314
BstMBI GATC 3 cut(s) 1297, 1801, 2037
BstMWI GCNNNNNNNGC 3 cut(s) 297, 1669, 1700
BstNI CCWGG 3 cut(s) 468, 1746, 2035
BstSCI CCNGG 3 cut(s) 466, 1744, 2033
BstSFI CTRYAG 1 cut(s) 1573
BstV1I GCAGC 1 cut(s) 1706
BstV2I GAAGAC 3 cut(s) 896, 977, 1410
BstX2I RGATCY 1 cut(s) 2037
BstYI RGATCY 1 cut(s) 2037
Bsu36I CCTNAGG 1 cut(s) 1106
BsuRI GGCC 7 cut(s) 171, 186, 291, 425, 431, 1359, 1895
BtgI CCRYGG 3 cut(s) 378, 432, 1640
BtrI CACGTC 2 cut(s) 175, 1408
BtsCI GGATG 6 cut(s) 332, 664, 1138, 1158, 1591, 2162
BveI ACCTGC 1 cut(s) 1976
Cac8I GCNNGC 1 cut(s) 1661
CciI TCATGA 2 cut(s) 1459, 2242
CfoI GCGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 349, 682, 1007
CviQI GTAC 3 cut(s) 349, 682, 1007
DdeI CTNAG 5 cut(s) 488, 609, 1106, 1505, 1957
DpnI GATC 3 cut(s) 1299, 1803, 2039
DpnII GATC 3 cut(s) 1297, 1801, 2037
DraI TTTAAA 1 cut(s) 1498
EaeI YGGCCR 2 cut(s) 169, 429
Eam1104I CTCTTC 6 cut(s) 82, 632, 951, 1179, 1573, 2247
EarI CTCTTC 6 cut(s) 82, 632, 951, 1179, 1573, 2247
Eco130I CCWWGG 4 cut(s) 378, 426, 432, 1640
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 2204
Eco57I CTGAAG 2 cut(s) 1250, 1719
Eco72I CACGTG 1 cut(s) 398
Eco81I CCTNAGG 1 cut(s) 1106
Eco88I CYCGRG 1 cut(s) 2270
EcoNI CCTNNNNNAGG 1 cut(s) 1610
EcoRII CCWGG 3 cut(s) 466, 1744, 2033
EcoT14I CCWWGG 4 cut(s) 378, 426, 432, 1640
EcoT22I ATGCAT 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 4 cut(s) 378, 426, 432, 1640
FalI AAGNNNNNCTT 2 cut(s) 1584, 1616
Fnu4HI GCNGC 2 cut(s) 696, 1695
FokI GGATG 6 cut(s) 319, 671, 1145, 1165, 1598, 2169
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 2 cut(s) 696, 1695
FspBI CTAG 1 cut(s) 1751
GlaI GCGC 1 cut(s) 472
GluI GCNGC 2 cut(s) 696, 1695
GsaI CCCAGC 1 cut(s) 775
GsuI CTGGAG 1 cut(s) 2017
HaeII RGCGCY 1 cut(s) 474
HaeIII GGCC 7 cut(s) 171, 186, 291, 425, 431, 1359, 1895
HhaI GCGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 3 cut(s) 690, 832, 1246
HindII GTYRAC 3 cut(s) 690, 832, 1246
HindIII AAGCTT 2 cut(s) 1701, 1806
HphI GGTGA 6 cut(s) 193, 250, 836, 1948, 2015, 2057
Hpy166II GTNNAC 7 cut(s) 351, 684, 690, 832, 1246, 1631, 2048
Hpy188I TCNGA 9 cut(s) 870, 1066, 1093, 1132, 1291, 1416, 1506, 1909, 1926
Hpy8I GTNNAC 7 cut(s) 351, 684, 690, 832, 1246, 1631, 2048
Hpy99I CGWCG 3 cut(s) 170, 179, 185
HpyCH4III ACNGT 5 cut(s) 590, 1348, 1467, 1768, 2083
HpyCH4IV ACGT 6 cut(s) 165, 174, 397, 686, 1407, 2064
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 1669, 1700
HpyF3I CTNAG 5 cut(s) 488, 609, 1106, 1505, 1957
HpySE526I ACGT 6 cut(s) 165, 174, 397, 686, 1407, 2064
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 3 cut(s) 1297, 1801, 2037
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 5 cut(s) 436, 862, 1244, 1516, 2167
Lsp1109I GCAGC 1 cut(s) 1706
MaeI CTAG 1 cut(s) 1751
MaeII ACGT 6 cut(s) 165, 174, 397, 686, 1407, 2064
MaeIII GTNAC 1 cut(s) 1963
MalI GATC 3 cut(s) 1299, 1803, 2039
MboI GATC 3 cut(s) 1297, 1801, 2037
MfeI CAATTG 2 cut(s) 358, 451
MflI RGATCY 1 cut(s) 2037
MhlI GDGCHC 3 cut(s) 403, 1023, 2164
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 2 cut(s) 19, 935
MmeI TCCRAC 3 cut(s) 360, 576, 1380
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 762
MroXI GAANNNNTTC 1 cut(s) 1920
MscI TGGCCA 1 cut(s) 431
MseI TTAA 4 cut(s) 701, 1391, 1497, 1602
MslI CAYNNNNRTG 1 cut(s) 800
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 1697
MspR9I CCNGG 3 cut(s) 468, 1746, 2035
MunI CAATTG 2 cut(s) 358, 451
MvaI CCWGG 3 cut(s) 468, 1746, 2035
MwoI GCNNNNNNNGC 3 cut(s) 297, 1669, 1700
NcoI CCATGG 3 cut(s) 378, 432, 1640
NdeII GATC 3 cut(s) 1297, 1801, 2037
NlaIV GGNNCC 2 cut(s) 448, 1240
NsiI ATGCAT 1 cut(s) 762
NspV TTCGAA 1 cut(s) 729
PagI TCATGA 2 cut(s) 1459, 2242
PceI AGGCCT 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 1920
PfeI GAWTC 8 cut(s) 255, 871, 907, 1083, 1101, 1286, 1411, 1440
PfoI TCCNGGA 1 cut(s) 2033
PkrI GCNGC 2 cut(s) 697, 1696
PleI GAGTC 2 cut(s) 19, 934
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 2 cut(s) 19, 934
Ppu21I YACGTR 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 466, 1744, 2033
PspCI CACGTG 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 771
PspGI CCWGG 3 cut(s) 466, 1744, 2033
PspN4I GGNNCC 2 cut(s) 448, 1240
PsuI RGATCY 1 cut(s) 2037
PvuII CAGCTG 1 cut(s) 1697
RsaI GTAC 3 cut(s) 350, 683, 1008
RsaNI GTAC 3 cut(s) 349, 682, 1007
RseI CAYNNNNRTG 1 cut(s) 800
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 4 cut(s) 701, 1391, 1497, 1602
SatI GCNGC 2 cut(s) 696, 1695
Sau3AI GATC 3 cut(s) 1297, 1801, 2037
SchI GAGTC 2 cut(s) 19, 935
ScrFI CCNGG 3 cut(s) 468, 1746, 2035
SduI GDGCHC 3 cut(s) 403, 1023, 2164
SfcI CTRYAG 1 cut(s) 1573
SfuI TTCGAA 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 2 cut(s) 293, 1157
SmoI CTYRAG 2 cut(s) 293, 1157
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 2 cut(s) 695, 1856
SspI AATATT 1 cut(s) 1560
SspMI CTAG 1 cut(s) 1751
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 466, 1744, 2033
StyI CCWWGG 4 cut(s) 378, 426, 432, 1640
TaaI ACNGT 5 cut(s) 590, 1348, 1467, 1768, 2083
TaiI ACGT 6 cut(s) 168, 177, 400, 689, 1410, 2067
TaqI TCGA 5 cut(s) 273, 403, 620, 675, 729
TatI WGTACW 1 cut(s) 1006
TauI GCSGC 1 cut(s) 698
TfiI GAWTC 8 cut(s) 255, 871, 907, 1083, 1101, 1286, 1411, 1440
Tru1I TTAA 4 cut(s) 701, 1391, 1497, 1602
Tru9I TTAA 4 cut(s) 701, 1391, 1497, 1602
TseI GCWGC 1 cut(s) 1694
TspGWI ACGGA 2 cut(s) 1165, 1231
XagI CCTNNNNNAGG 1 cut(s) 1610
XapI RAATTY 3 cut(s) 232, 1367, 1735
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 1920
XspI CTAG 1 cut(s) 1751
ZraI GACGTC 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.