Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08310 AT5G08310 |
| fragaria_vesca | FvH4_4g11722 FvH4_4g11723 |
| prunus_persica | Prupe.7G271800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0408911 |
| rosa_laevigata | RLG00000008609 |
| rosa_multiflora | Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00353290 |
| rosa_rugosa | Rorug04G0088600 |
| rosa_samantha | Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800 |
| rosa_wichuraiana | Rw4G012550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 494, 1527 |
| Acc36I | ACCTGC | 1 cut(s) | 706 |
| AccB1I | GGYRCC | 2 cut(s) | 337, 1596 |
| AccI | GTMKAC | 1 cut(s) | 2157 |
| AccII | CGCG | 1 cut(s) | 405 |
| AciI | CCGC | 2 cut(s) | 979, 1710 |
| AcsI | RAATTY | 4 cut(s) | 451, 683, 1818, 2316 |
| AcuI | CTGAAG | 3 cut(s) | 320, 1262, 1415 |
| AcvI | CACGTG | 1 cut(s) | 322 |
| AcyI | GRCGYC | 1 cut(s) | 180 |
| AfaI | GTAC | 4 cut(s) | 356, 695, 1020, 1167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 351, 1642 |
| AflIII | ACRYGT | 1 cut(s) | 321 |
| AhlI | ACTAGT | 1 cut(s) | 82 |
| AjnI | CCWGG | 4 cut(s) | 332, 472, 1179, 2063 |
| AleI | CACNNNNGTG | 1 cut(s) | 1223 |
| Alw21I | GWGCWC | 1 cut(s) | 2206 |
| Alw26I | GTCTC | 2 cut(s) | 2355, 2361 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1943 |
| AoxI | GGCC | 5 cut(s) | 151, 295, 387, 1416, 2258 |
| ApeKI | GCWGC | 2 cut(s) | 1702, 1843 |
| ApoI | RAATTY | 4 cut(s) | 451, 683, 1818, 2316 |
| AseI | ATTAAT | 2 cut(s) | 1811, 2126 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1099, 1440, 1767 |
| AspLEI | GCGC | 2 cut(s) | 73, 407 |
| AspS9I | GGNCC | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 6 cut(s) | 166, 199, 256, 848, 1978, 2087 |
| AsuII | TTCGAA | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 340 |
| BanI | GGYRCC | 2 cut(s) | 337, 1596 |
| BbrPI | CACGTG | 1 cut(s) | 322 |
| BbsI | GAAGAC | 2 cut(s) | 908, 1615 |
| Bbv12I | GWGCWC | 1 cut(s) | 2206 |
| BbvI | GCAGC | 2 cut(s) | 1714, 1855 |
| BceAI | ACGGC | 2 cut(s) | 1264, 1812 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 50, 84 |
| BciT130I | CCWGG | 4 cut(s) | 334, 474, 1181, 2065 |
| BciVI | GTATCC | 1 cut(s) | 1107 |
| BclI | TGATCA | 1 cut(s) | 544 |
| BcoDI | GTCTC | 2 cut(s) | 2355, 2361 |
| BcuI | ACTAGT | 1 cut(s) | 82 |
| BfaI | CTAG | 3 cut(s) | 83, 290, 2273 |
| BfuAI | ACCTGC | 1 cut(s) | 706 |
| BfuI | GTATCC | 1 cut(s) | 1107 |
| BisI | GCNGC | 2 cut(s) | 1703, 1844 |
| BlsI | GCNGC | 2 cut(s) | 1704, 1845 |
| Bme1390I | CCNGG | 4 cut(s) | 334, 474, 1181, 2065 |
| BmgT120I | GGNCC | 1 cut(s) | 152 |
| BmiI | GGNNCC | 3 cut(s) | 339, 1252, 1598 |
| BmrFI | CCNGG | 4 cut(s) | 334, 474, 1181, 2065 |
| BmsI | GCATC | 6 cut(s) | 781, 1294, 1480, 1638, 2040, 2152 |
| BpiI | GAAGAC | 2 cut(s) | 908, 1615 |
| BpmI | CTGGAG | 4 cut(s) | 495, 690, 944, 2047 |
| Bpu14I | TTCGAA | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 2 cut(s) | 1190, 1441 |
| BsaAI | YACGTR | 1 cut(s) | 322 |
| BsaBI | GATNNNNATC | 1 cut(s) | 882 |
| BsaHI | GRCGYC | 1 cut(s) | 180 |
| BsaI | GGTCTC | 1 cut(s) | 2355 |
| BsaJI | CCNNGG | 4 cut(s) | 333, 384, 432, 1670 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 688, 718 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 351, 1642 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| Bse1I | ACTGG | 2 cut(s) | 154, 961 |
| Bse3DI | GCAATG | 2 cut(s) | 5, 2149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 882 |
| BseBI | CCWGG | 4 cut(s) | 334, 474, 1181, 2065 |
| BseDI | CCNNGG | 4 cut(s) | 333, 384, 432, 1670 |
| BseGI | GGATG | 5 cut(s) | 1351, 1621, 2024, 2073, 2204 |
| BseJI | GATNNNNATC | 1 cut(s) | 882 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 351, 1642 |
| BseMI | GCAATG | 2 cut(s) | 5, 2149 |
| BseMII | CTCAG | 1 cut(s) | 2001 |
| BseNI | ACTGG | 2 cut(s) | 154, 961 |
| BseSI | GKGCMC | 1 cut(s) | 340 |
| BseXI | GCAGC | 2 cut(s) | 1714, 1855 |
| Bsh1236I | CGCG | 1 cut(s) | 405 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 5 cut(s) | 153, 297, 389, 1418, 2260 |
| BshNI | GGYRCC | 2 cut(s) | 337, 1596 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2206 |
| BsiSI | CCGG | 1 cut(s) | 177 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 351, 1642 |
| BsmAI | GTCTC | 2 cut(s) | 2355, 2361 |
| BsnI | GGCC | 5 cut(s) | 153, 297, 389, 1418, 2260 |
| Bso31I | GGTCTC | 1 cut(s) | 2355 |
| Bsp119I | TTCGAA | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 2 cut(s) | 340, 2206 |
| Bsp143I | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| Bsp19I | CCATGG | 3 cut(s) | 384, 432, 1670 |
| BspACI | CCGC | 2 cut(s) | 979, 1710 |
| BspANI | GGCC | 5 cut(s) | 153, 297, 389, 1418, 2260 |
| BspCNI | CTCAG | 1 cut(s) | 2000 |
| BspFNI | CGCG | 1 cut(s) | 405 |
| BspLI | GGNNCC | 3 cut(s) | 339, 1252, 1598 |
| BspMI | ACCTGC | 1 cut(s) | 706 |
| BspT104I | TTCGAA | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 2 cut(s) | 337, 1596 |
| BspTNI | GGTCTC | 1 cut(s) | 2355 |
| BsrDI | GCAATG | 2 cut(s) | 5, 2149 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BsrI | ACTGG | 2 cut(s) | 154, 961 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 4 cut(s) | 333, 384, 432, 1670 |
| BssMI | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| BssNI | GRCGYC | 1 cut(s) | 180 |
| BssT1I | CCWWGG | 3 cut(s) | 384, 432, 1670 |
| Bst2UI | CCWGG | 4 cut(s) | 334, 474, 1181, 2065 |
| Bst4CI | ACNGT | 3 cut(s) | 997, 1235, 1497 |
| Bst6I | CTCTTC | 3 cut(s) | 165, 296, 1191 |
| BstACI | GRCGYC | 1 cut(s) | 180 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 664 |
| BstBAI | YACGTR | 1 cut(s) | 322 |
| BstBI | TTCGAA | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 2 cut(s) | 1551, 2258 |
| BstDEI | CTNAG | 2 cut(s) | 621, 1987 |
| BstDSI | CCRYGG | 3 cut(s) | 384, 432, 1670 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1640 |
| BstF5I | GGATG | 5 cut(s) | 1351, 1621, 2024, 2073, 2204 |
| BstFNI | CGCG | 1 cut(s) | 405 |
| BstHHI | GCGC | 2 cut(s) | 73, 407 |
| BstKTI | GATC | 4 cut(s) | 60, 547, 880, 1834 |
| BstMAI | GTCTC | 2 cut(s) | 2355, 2361 |
| BstMBI | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 664, 1730, 2225, 2253 |
| BstNI | CCWGG | 4 cut(s) | 334, 474, 1181, 2065 |
| BstSCI | CCNGG | 4 cut(s) | 332, 472, 1179, 2063 |
| BstSLI | GKGCMC | 1 cut(s) | 340 |
| BstUI | CGCG | 1 cut(s) | 405 |
| BstV1I | GCAGC | 2 cut(s) | 1714, 1855 |
| BstV2I | GAAGAC | 2 cut(s) | 908, 1615 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BsuI | GTATCC | 1 cut(s) | 1107 |
| BsuRI | GGCC | 5 cut(s) | 153, 297, 389, 1418, 2260 |
| BtgI | CCRYGG | 3 cut(s) | 384, 432, 1670 |
| BtgZI | GCGATG | 1 cut(s) | 2063 |
| BtsCI | GGATG | 5 cut(s) | 1351, 1621, 2024, 2073, 2204 |
| BtsI | GCAGTG | 1 cut(s) | 1731 |
| BtsIMutI | CAGTG | 2 cut(s) | 1493, 1731 |
| BveI | ACCTGC | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 2 cut(s) | 1551, 2258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1943 |
| CfoI | GCGC | 2 cut(s) | 73, 407 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 1 cut(s) | 152 |
| CseI | GACGC | 1 cut(s) | 169 |
| Csp6I | GTAC | 4 cut(s) | 355, 694, 1019, 1166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1675, 1710 |
| CviQI | GTAC | 4 cut(s) | 355, 694, 1019, 1166 |
| DdeI | CTNAG | 2 cut(s) | 621, 1987 |
| DpnI | GATC | 4 cut(s) | 59, 546, 879, 1833 |
| DpnII | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| DraI | TTTAAA | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 3 cut(s) | 165, 296, 1191 |
| EarI | CTCTTC | 3 cut(s) | 165, 296, 1191 |
| Eco130I | CCWWGG | 3 cut(s) | 384, 432, 1670 |
| Eco147I | AGGCCT | 2 cut(s) | 1418, 2260 |
| Eco31I | GGTCTC | 1 cut(s) | 2355 |
| Eco57I | CTGAAG | 3 cut(s) | 320, 1262, 1415 |
| Eco72I | CACGTG | 1 cut(s) | 322 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1640 |
| EcoRI | GAATTC | 2 cut(s) | 451, 683 |
| EcoRII | CCWGG | 4 cut(s) | 332, 472, 1179, 2063 |
| EcoT14I | CCWWGG | 3 cut(s) | 384, 432, 1670 |
| ErhI | CCWWGG | 3 cut(s) | 384, 432, 1670 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1542, 1574, 2037, 2069 |
| FbaI | TGATCA | 1 cut(s) | 544 |
| FblI | GTMKAC | 1 cut(s) | 2157 |
| Fnu4HI | GCNGC | 2 cut(s) | 1703, 1844 |
| FokI | GGATG | 5 cut(s) | 1338, 1628, 2031, 2080, 2211 |
| Fsp4HI | GCNGC | 2 cut(s) | 1703, 1844 |
| FspBI | CTAG | 3 cut(s) | 83, 290, 2273 |
| GlaI | GCGC | 2 cut(s) | 72, 406 |
| GluI | GCNGC | 2 cut(s) | 1703, 1844 |
| GsuI | CTGGAG | 4 cut(s) | 495, 690, 944, 2047 |
| HaeIII | GGCC | 5 cut(s) | 153, 297, 389, 1418, 2260 |
| HapII | CCGG | 1 cut(s) | 177 |
| HgaI | GACGC | 1 cut(s) | 169 |
| HhaI | GCGC | 2 cut(s) | 73, 407 |
| Hin1I | GRCGYC | 1 cut(s) | 180 |
| Hin6I | GCGC | 2 cut(s) | 71, 405 |
| HinP1I | GCGC | 2 cut(s) | 71, 405 |
| HincII | GTYRAC | 2 cut(s) | 1000, 2158 |
| HindII | GTYRAC | 2 cut(s) | 1000, 2158 |
| HindIII | AAGCTT | 3 cut(s) | 849, 1529, 1731 |
| HpaII | CCGG | 1 cut(s) | 177 |
| HphI | GGTGA | 6 cut(s) | 166, 199, 256, 848, 1978, 2087 |
| Hpy166II | GTNNAC | 6 cut(s) | 696, 1000, 1166, 1457, 1661, 2158 |
| Hpy188I | TCNGA | 9 cut(s) | 468, 1078, 1105, 1144, 1303, 1446, 1939, 2289, 2356 |
| Hpy8I | GTNNAC | 6 cut(s) | 696, 1000, 1166, 1457, 1661, 2158 |
| Hpy99I | CGWCG | 1 cut(s) | 2162 |
| HpyCH4III | ACNGT | 3 cut(s) | 997, 1235, 1497 |
| HpyCH4IV | ACGT | 1 cut(s) | 321 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 664, 1730, 2225, 2253 |
| HpyF3I | CTNAG | 2 cut(s) | 621, 1987 |
| HpySE526I | ACGT | 1 cut(s) | 321 |
| Hsp92I | GRCGYC | 1 cut(s) | 180 |
| HspAI | GCGC | 2 cut(s) | 71, 405 |
| Ksp22I | TGATCA | 1 cut(s) | 544 |
| Kzo9I | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| LmnI | GCTCC | 6 cut(s) | 476, 1048, 1256, 1332, 1546, 2209 |
| Lsp1109I | GCAGC | 2 cut(s) | 1714, 1855 |
| LweI | GCATC | 6 cut(s) | 781, 1294, 1480, 1638, 2040, 2152 |
| MaeI | CTAG | 3 cut(s) | 83, 290, 2273 |
| MaeII | ACGT | 1 cut(s) | 321 |
| MaeIII | GTNAC | 3 cut(s) | 1357, 1853, 1993 |
| MalI | GATC | 4 cut(s) | 59, 546, 879, 1833 |
| MboI | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| MfeI | CAATTG | 2 cut(s) | 364, 633 |
| MhlI | GDGCHC | 2 cut(s) | 340, 2206 |
| MlyI | GAGTC | 5 cut(s) | 255, 463, 697, 1026, 1097 |
| MmeI | TCCRAC | 3 cut(s) | 287, 582, 1389 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1099, 1440, 1767 |
| MseI | TTAA | 8 cut(s) | 33, 552, 752, 1038, 1338, 1632, 1811, 2126 |
| MslI | CAYNNNNRTG | 5 cut(s) | 437, 1104, 1223, 1719, 1956 |
| MspA1I | CMGCKG | 2 cut(s) | 1705, 1846 |
| MspI | CCGG | 1 cut(s) | 177 |
| MspR9I | CCNGG | 4 cut(s) | 334, 474, 1181, 2065 |
| MunI | CAATTG | 2 cut(s) | 364, 633 |
| MvaI | CCWGG | 4 cut(s) | 334, 474, 1181, 2065 |
| MvnI | CGCG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 664, 1730, 2225, 2253 |
| NcoI | CCATGG | 3 cut(s) | 384, 432, 1670 |
| NdeII | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| NlaIV | GGNNCC | 3 cut(s) | 339, 1252, 1598 |
| NmuCI | GTSAC | 2 cut(s) | 1357, 1853 |
| NspV | TTCGAA | 1 cut(s) | 455 |
| OliI | CACNNNNGTG | 1 cut(s) | 1223 |
| PceI | AGGCCT | 2 cut(s) | 1418, 2260 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1099, 1440, 1767 |
| PfeI | GAWTC | 6 cut(s) | 15, 671, 919, 1095, 1298, 1441 |
| PfoI | TCCNGGA | 3 cut(s) | 472, 1179, 2063 |
| PkrI | GCNGC | 2 cut(s) | 1704, 1845 |
| Ple19I | CGATCG | 1 cut(s) | 60 |
| PleI | GAGTC | 5 cut(s) | 255, 463, 697, 1026, 1096 |
| PmaCI | CACGTG | 1 cut(s) | 322 |
| PmlI | CACGTG | 1 cut(s) | 322 |
| PpsI | GAGTC | 5 cut(s) | 255, 463, 697, 1026, 1096 |
| Ppu21I | YACGTR | 1 cut(s) | 322 |
| PshBI | ATTAAT | 2 cut(s) | 1811, 2126 |
| PsiI | TTATAA | 2 cut(s) | 494, 1527 |
| Psp6I | CCWGG | 4 cut(s) | 332, 472, 1179, 2063 |
| PspCI | CACGTG | 1 cut(s) | 322 |
| PspGI | CCWGG | 4 cut(s) | 332, 472, 1179, 2063 |
| PspN4I | GGNNCC | 3 cut(s) | 339, 1252, 1598 |
| PspPI | GGNCC | 1 cut(s) | 152 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 504, 536 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1943 |
| PvuI | CGATCG | 1 cut(s) | 60 |
| PvuII | CAGCTG | 2 cut(s) | 1705, 1846 |
| RsaI | GTAC | 4 cut(s) | 356, 695, 1020, 1167 |
| RsaNI | GTAC | 4 cut(s) | 355, 694, 1019, 1166 |
| RseI | CAYNNNNRTG | 5 cut(s) | 437, 1104, 1223, 1719, 1956 |
| SalI | GTCGAC | 1 cut(s) | 2156 |
| SaqAI | TTAA | 8 cut(s) | 33, 552, 752, 1038, 1338, 1632, 1811, 2126 |
| SatI | GCNGC | 2 cut(s) | 1703, 1844 |
| Sau3AI | GATC | 4 cut(s) | 57, 544, 877, 1831 |
| Sau96I | GGNCC | 1 cut(s) | 152 |
| SchI | GAGTC | 5 cut(s) | 255, 463, 697, 1026, 1097 |
| ScrFI | CCNGG | 4 cut(s) | 334, 474, 1181, 2065 |
| SduI | GDGCHC | 2 cut(s) | 340, 2206 |
| SfaNI | GCATC | 6 cut(s) | 781, 1294, 1480, 1638, 2040, 2152 |
| SfuI | TTCGAA | 1 cut(s) | 455 |
| SgrAI | CRCCGGYG | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 437, 1104, 1223, 1719, 1956 |
| SmlI | CTYRAG | 2 cut(s) | 1169, 1420 |
| SmoI | CTYRAG | 2 cut(s) | 1169, 1420 |
| SpeI | ACTAGT | 1 cut(s) | 82 |
| SseBI | AGGCCT | 2 cut(s) | 1418, 2260 |
| SsiI | CCGC | 2 cut(s) | 979, 1710 |
| SspMI | CTAG | 3 cut(s) | 83, 290, 2273 |
| StuI | AGGCCT | 2 cut(s) | 1418, 2260 |
| StyD4I | CCNGG | 4 cut(s) | 332, 472, 1179, 2063 |
| StyI | CCWWGG | 3 cut(s) | 384, 432, 1670 |
| TaaI | ACNGT | 3 cut(s) | 997, 1235, 1497 |
| TaiI | ACGT | 1 cut(s) | 324 |
| TaqI | TCGA | 7 cut(s) | 60, 409, 455, 1270, 1746, 1834, 2157 |
| TaqII | GACCGA | 1 cut(s) | 2373 |
| TatI | WGTACW | 3 cut(s) | 693, 1018, 1165 |
| TfiI | GAWTC | 6 cut(s) | 15, 671, 919, 1095, 1298, 1441 |
| Tru1I | TTAA | 8 cut(s) | 33, 552, 752, 1038, 1338, 1632, 1811, 2126 |
| Tru9I | TTAA | 8 cut(s) | 33, 552, 752, 1038, 1338, 1632, 1811, 2126 |
| TscAI | CASTG | 2 cut(s) | 1500, 1731 |
| TseFI | GTSAC | 2 cut(s) | 1357, 1853 |
| TseI | GCWGC | 2 cut(s) | 1702, 1843 |
| Tsp45I | GTSAC | 2 cut(s) | 1357, 1853 |
| TspGWI | ACGGA | 2 cut(s) | 1151, 1841 |
| TspRI | CASTG | 2 cut(s) | 1500, 1731 |
| VspI | ATTAAT | 2 cut(s) | 1811, 2126 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1640 |
| XapI | RAATTY | 4 cut(s) | 451, 683, 1818, 2316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1106 |
| XmiI | GTMKAC | 1 cut(s) | 2157 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1099, 1440, 1767 |
| XspI | CTAG | 3 cut(s) | 83, 290, 2273 |