Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015139

Physical Location & Seq

Genomic Coordinates Forward (+)

33276013 .. 33278361

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGCACTGCCAAGAATCTCCAAGACTCATCAAAACCTCTGGAAATCAATAAACCCCATCAACCCAACTGCGTTCTTTTCCCTCATCTTCGCCAACATCCACACGCCCTCATCGAATTCACCCAGACCCATTTGCACCAAAACCCACTCTGACCCTTTTCTTCCTAATCCAGACGCGGGTCACGTCGCCGACGGTCTCATTTCCATCTTCACCAAGCAACCTTTCTCCCCAGACAACCCAGATTTGAAGCATTTTGCTTCAAGAATCACCCCAAAAGCAGTCGAATGTGTGCTGAATTGCCTCACGAGCTGGAAGCTAGCTCACTTGTTCTTCACCTGGGCATCAAACCAAGGTGGGTACAAGCACAATTGCTATACCTACAATGCCATGGCTTCACACCTATCACGTGCTCGACAAAATGCCCCAATGAGAGCCCTGGCCATGGAAGTTGTGGATTCCAATTGTTATATGACCCCTGGAGCTTTGGGTTTCTTTCTAAGATGCTTAGGGAGTGTGGAGTTGGTTGAAGAAGCCAACACTTTGTTTGATCAAGTTTGTACAAAGGGTCTTTGTGTTCCAAATAGCTATAGCTACAACTGTTTGTTGGAGGCTATATCCAAGTCTGGTTCGATTGAGTTATTTGAGAAGCGAATGAAAGAAATGGAGGATTGTGGTTTGGAATTCGATAGGTACACATTGACTGCGGCGTTGAAGGTTTATTGCAATGCAGGGAAGTTCGAAAAGGCTTTGAATGTTTACAATGAGATGCATGAGAAGAGCTGGGTGGATGCACATGCCATGTCTATCTTGGTGTTGCATTTGAGCAAGTCGGGTGAAGTGGACAAGGCTTTTGATTTGATTGAAAGAATGGAACGTCGCAATCTTGGCTTGAATGACAAGACATTTCGTGTTTTGATTCATGGGTTTGTGAGGGAGTCCAGAGTGGATAAGGCCCTCCAACTGTTTGATAAAATGCGGAAGTCAGGTTTCTCTGTTGACGTTTCTCTTTATGATGTACTGATTGGAGGGCTCTGTAAGAATAGAGAGATTGAGAAAGCCTTGTCTATGTATTCGGAAATGAAGGATTTGGGAATCCATTCTGATGTTAGAGTCCTTACGAAGCTCATATTGGCTTGTTCTGATGAAAGGGAAATGATTCAGATGCTTGAGGAAATTCAGGAAGATTTAAATGAAGAGGATATGCTTTTGCTTTGCAGTTCTGTTCTGAATAGTCTGGTTAATAACGACTCCATTGACAGAGCTTATCGACTGCTTCAGGCAATGATGAAAAAAGAATCTGATGCTGATCCAGTAGTAAAGAAAAAGGTTCGTCCTACCACCCGTTCATTTGAAATTGTTATTGATGGCCTTCTAAAATTTGGTAAGTTGGCCGTGGCATTAAGCCTTTTGGAAGATATGAATCAGATTGGGTGTAAACCAGATATAGTAATTTACAATAATGTAATTGATGAACTGTGCAAAGCAAATAGATTGGAGGAAAGTTATAAGCTTCTGAGAGAGATGGAGCAATCTGGAATTGAACCAACACATTTTACCCATAACTCGATATATGGTTGCCACTGTAGAAGAGAGGATGTTCAAGGAGCCCTTAACCTAGTGAAGGAGATGCGTGTTTGTGGACATGAACCATGGAAAAAACATTCCACCTTGCTTGTGAAGCAGTTGTGCGAACATGGAAAGGCAGCTGAAGCTTGTAATTTTCTTGATAAAATGGTTGAAGTAAGTTTTGTCCCTCGTCTAGTTTCCTATTCTGCGGTTATTAGTGGATTACTCAAAATTCAAGAAGTAGATCGAGCTTTACAGCTGTTTCAGGACATCTGTGCTGATGGCTATTGTCCTGATGTAGTTTTCTATAACATAATGATAGATGGTCTGTGTAAGGCCAAAAGAGTCTCGGAAGCAGAAAACTTTCTGAAGGAGATGGTCATGAAGGGGCTTGTTCCCTCTGTTGTAACCTACAATCTGCTGATAAATGGATATTGTAAAAATGGTGATGTAGATAAAGCCATGACGTGCCTCTCCAGGATCTTTGATGAAGCCAGAGAACCTAACGTGATTACGTACACAACCTTAATAGATGGATTATGCAATGCTGGAAGGATTGATGATGCTCTTGTGCTTTGGAACAACATGGCAAAGAAAGGATGTGCTCCAAACAGAATTGCTTTTGTGGCTCTTATTAACGGTCTTTGCAAGTGTGGTAAGCCTGCTGAGGCTTTAGCCTATCTTCGTGAGATGGAAGAGAAAGAAATGAAACCTGGGATACGTGCATATTCAGCAGTAATAAGTGCTTTAATCTCTAATTTAAACATTCCCCCTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

783

Amino Acids

87.9

Weight (kDa)

6.47

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	193 - 242	7.3e-07	PPR repeat family
TPR_24	PF23276	203 - 324	3.5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	263 - 311	3.2e-08	PPR repeat family
PPR	PF01535	301 - 330	3.5e-06	PPR repeat
PPR_2	PF13041	333 - 379	1.4e-08	PPR repeat family
PPR	PF01535	337 - 365	2.2e-06	PPR repeat
PPR_3	PF13812	468 - 525	4.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	8.8e-11	PPR repeat
PPR_2	PF13041	480 - 528	7.5e-13	PPR repeat family
PPR	PF01535	483 - 513	8.2e-06	PPR repeat
PPR_long	PF17177	598 - 692	7.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	609 - 669	2.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	616 - 649	1.8e-12	PPR repeat
PPR_2	PF13041	620 - 669	5.2e-18	PPR repeat family
PPR	PF01535	623 - 653	1e-07	PPR repeat
PPR_1	PF12854	651 - 677	3.2e-12	PPR repeat
PPR_2	PF13041	655 - 704	2.6e-17	PPR repeat family
PPR	PF01535	658 - 682	3.4e-07	PPR repeat
PPR_1	PF12854	689 - 718	9.8e-13	PPR repeat
PPR_3	PF13812	689 - 735	7.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	690 - 739	1.2e-17	PPR repeat family
PPR	PF01535	693 - 723	2e-07	PPR repeat
TPR_24	PF23276	693 - 777	9.4e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	721 - 754	1.2e-07	PPR repeat
PPR_2	PF13041	730 - 772	5.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08310 AT5G08310
fragaria_vesca	FvH4_4g11722 FvH4_4g11723
prunus_persica	Prupe.7G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408911
rosa_laevigata	RLG00000008609
rosa_multiflora	Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353290
rosa_rugosa	Rorug04G0088600
rosa_samantha	Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800
rosa_wichuraiana	Rw4G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1506
AccII	CGCG	1 cut(s)	176
AciI	CCGC	4 cut(s)	176, 704, 976, 1775
AclWI	GGATC	2 cut(s)	1301, 2054
AcoI	YGGCCR	2 cut(s)	438, 1389
AcsI	RAATTY	5 cut(s)	115, 680, 1173, 1376, 1797
AcuI	CTGAAG	3 cut(s)	1259, 1728, 1955
AcvI	CACGTG	1 cut(s)	407
AfaI	GTAC	5 cut(s)	359, 559, 692, 1017, 2084
AfiI	CCNNNNNNNGG	3 cut(s)	176, 442, 1621
AjiI	CACGTC	2 cut(s)	184, 2034
AjnI	CCWGG	5 cut(s)	335, 435, 475, 2042, 2278
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 1112, 1144
Alw21I	GWGCWC	2 cut(s)	412, 2173
Alw26I	GTCTC	2 cut(s)	200, 1918
AlwI	GGATC	2 cut(s)	1301, 2054
AoxI	GGCC	5 cut(s)	438, 951, 1366, 1389, 1902
ApeKI	GCWGC	1 cut(s)	1703
ApoI	RAATTY	5 cut(s)	115, 680, 1173, 1376, 1797
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
Asp700I	GAANNNNTTC	3 cut(s)	1096, 1155, 1929
AspS9I	GGNCC	1 cut(s)	952
AsuHPI	GGTGA	6 cut(s)	111, 202, 259, 325, 845, 2024
AsuII	TTCGAA	1 cut(s)	738
AsuNHI	GCTAGC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	436, 1032, 1609
BauI	CACGAG	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	412, 2173
BbvCI	CCTCAGC	1 cut(s)	2232
BbvI	GCAGC	1 cut(s)	1715
BccI	CCATC	9 cut(s)	65, 212, 1358, 1516, 1841, 1883, 1936, 2093, 2251
BceAI	ACGGC	1 cut(s)	1376
BciT130I	CCWGG	5 cut(s)	337, 437, 477, 2044, 2280
BciVI	GTATCC	1 cut(s)	2277
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	200, 1918
BfaI	CTAG	3 cut(s)	317, 1616, 1760
BfmI	CTRYAG	2 cut(s)	586, 1582
BfuI	GTATCC	1 cut(s)	2277
BisI	GCNGC	2 cut(s)	705, 1704
BlsI	GCNGC	2 cut(s)	706, 1705
Bme1390I	CCNGG	5 cut(s)	337, 437, 477, 2044, 2280
BmgBI	CACGTC	2 cut(s)	184, 2034
BmgT120I	GGNCC	1 cut(s)	952
BmiI	GGNNCC	1 cut(s)	1606
BmrFI	CCNGG	5 cut(s)	337, 437, 477, 2044, 2280
BmsI	GCATC	8 cut(s)	350, 491, 756, 778, 1152, 1291, 1617, 2119
BmtI	GCTAGC	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	177
BpmI	CTGGAG	2 cut(s)	498, 2026
Bpu10I	CCTNAGC	2 cut(s)	505, 2232
Bpu14I	TTCGAA	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	1187
BsaAI	YACGTR	3 cut(s)	407, 2082, 2288
BsaBI	GATNNNNATC	2 cut(s)	1305, 1419
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	9 cut(s)	336, 349, 387, 435, 441, 475, 1392, 1649, 2279
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 442, 1621
Bse1I	ACTGG	1 cut(s)	1310
Bse3DI	GCAATG	3 cut(s)	730, 1287, 2116
Bse8I	GATNNNNATC	2 cut(s)	1305, 1419
BseBI	CCWGG	5 cut(s)	337, 437, 477, 2044, 2280
BseDI	CCNNGG	9 cut(s)	336, 349, 387, 435, 441, 475, 1392, 1649, 2279
BseGI	GGATG	4 cut(s)	96, 793, 1600, 2171
BseJI	GATNNNNATC	2 cut(s)	1305, 1419
BseLI	CCNNNNNNNGG	3 cut(s)	176, 442, 1621
BseMI	GCAATG	3 cut(s)	730, 1287, 2116
BseMII	CTCAG	2 cut(s)	1505, 2223
BseNI	ACTGG	1 cut(s)	1310
BseXI	GCAGC	1 cut(s)	1715
BseYI	CCCAGC	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	5 cut(s)	440, 953, 1368, 1391, 1904
BsiHKAI	GWGCWC	2 cut(s)	412, 2173
BslFI	GGGAC	1 cut(s)	1736
BslI	CCNNNNNNNGG	3 cut(s)	176, 442, 1621
BsmAI	GTCTC	2 cut(s)	200, 1918
BsmFI	GGGAC	1 cut(s)	1736
BsnI	GGCC	5 cut(s)	440, 953, 1368, 1391, 1904
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	738
Bsp1286I	GDGCHC	5 cut(s)	412, 436, 1032, 1609, 2173
Bsp1407I	TGTACA	1 cut(s)	557
Bsp143I	GATC	4 cut(s)	547, 1306, 1810, 2046
Bsp19I	CCATGG	3 cut(s)	387, 441, 1649
BspACI	CCGC	4 cut(s)	176, 704, 976, 1775
BspANI	GGCC	5 cut(s)	440, 953, 1368, 1391, 1904
BspCNI	CTCAG	2 cut(s)	1506, 2224
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	1947
BspLI	GGNNCC	1 cut(s)	1606
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	1301, 2054
BspQI	GCTCTTC	1 cut(s)	770
BspT104I	TTCGAA	1 cut(s)	738
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	3 cut(s)	730, 1287, 2116
BsrGI	TGTACA	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	1310
BssECI	CCNNGG	9 cut(s)	336, 349, 387, 435, 441, 475, 1392, 1649, 2279
BssMI	GATC	4 cut(s)	547, 1306, 1810, 2046
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	4 cut(s)	349, 387, 441, 1649
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	5 cut(s)	337, 437, 477, 2044, 2280
Bst4CI	ACNGT	6 cut(s)	194, 599, 963, 1476, 1583, 2207
Bst6I	CTCTTC	4 cut(s)	770, 1188, 1582, 2256
BstAUI	TGTACA	1 cut(s)	557
BstBAI	YACGTR	3 cut(s)	407, 2082, 2288
BstBI	TTCGAA	1 cut(s)	738
BstC8I	GCNNGC	2 cut(s)	318, 2229
BstDEI	CTNAG	4 cut(s)	497, 505, 1514, 2232
BstDSI	CCRYGG	4 cut(s)	387, 441, 1392, 1649
BstENI	CCTNNNNNAGG	1 cut(s)	1619
BstF5I	GGATG	4 cut(s)	96, 793, 1600, 2171
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	4 cut(s)	550, 1309, 1813, 2049
BstMAI	GTCTC	2 cut(s)	200, 1918
BstMBI	GATC	4 cut(s)	547, 1306, 1810, 2046
BstMWI	GCNNNNNNNGC	6 cut(s)	306, 885, 1678, 1709, 2192, 2297
BstNI	CCWGG	5 cut(s)	337, 437, 477, 2044, 2280
BstNSI	RCATGY	1 cut(s)	797
BstPAI	GACNNNNGTC	1 cut(s)	177
BstSCI	CCNGG	5 cut(s)	335, 435, 475, 2042, 2278
BstSFI	CTRYAG	2 cut(s)	586, 1582
BstSNI	TACGTA	1 cut(s)	2082
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	1715
BstX2I	RGATCY	1 cut(s)	2046
BstYI	RGATCY	1 cut(s)	2046
BsuI	GTATCC	1 cut(s)	2277
BsuRI	GGCC	5 cut(s)	440, 953, 1368, 1391, 1904
BtgI	CCRYGG	4 cut(s)	387, 441, 1392, 1649
BtrI	CACGTC	2 cut(s)	184, 2034
BtsCI	GGATG	4 cut(s)	96, 793, 1600, 2171
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	5, 1579
Cac8I	GCNNGC	2 cut(s)	318, 2229
CciI	TCATGA	1 cut(s)	1947
Cfr13I	GGNCC	1 cut(s)	952
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	5 cut(s)	358, 558, 691, 1016, 2083
CspCI	CAANNNNNGTGG	2 cut(s)	1654, 1689
CviQI	GTAC	5 cut(s)	358, 558, 691, 1016, 2083
DdeI	CTNAG	4 cut(s)	497, 505, 1514, 2232
DpnI	GATC	4 cut(s)	549, 1308, 1812, 2048
DpnII	GATC	4 cut(s)	547, 1306, 1810, 2046
DraI	TTTAAA	2 cut(s)	1188, 2328
EaeI	YGGCCR	2 cut(s)	438, 1389
Eam1104I	CTCTTC	4 cut(s)	770, 1188, 1582, 2256
EarI	CTCTTC	4 cut(s)	770, 1188, 1582, 2256
Eco105I	TACGTA	1 cut(s)	2082
Eco130I	CCWWGG	4 cut(s)	349, 387, 441, 1649
Eco24I	GRGCYC	3 cut(s)	436, 1032, 1609
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	1259, 1728, 1955
Eco72I	CACGTG	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	1619
EcoO109I	RGGNCCY	1 cut(s)	952
EcoRI	GAATTC	2 cut(s)	115, 680
EcoRII	CCWGG	5 cut(s)	335, 435, 475, 2042, 2278
EcoT14I	CCWWGG	4 cut(s)	349, 387, 441, 1649
EcoT22I	ATGCAT	1 cut(s)	771
EcoT38I	GRGCYC	3 cut(s)	436, 1032, 1609
ErhI	CCWWGG	4 cut(s)	349, 387, 441, 1649
FalI	AAGNNNNNCTT	2 cut(s)	1593, 1625
FaqI	GGGAC	1 cut(s)	1736
FauI	CCCGC	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	705, 1704
FokI	GGATG	4 cut(s)	83, 800, 1607, 2178
FriOI	GRGCYC	3 cut(s)	436, 1032, 1609
Fsp4HI	GCNGC	2 cut(s)	705, 1704
FspBI	CTAG	3 cut(s)	317, 1616, 1760
GluI	GCNGC	2 cut(s)	705, 1704
GsaI	CCCAGC	1 cut(s)	784
GsuI	CTGGAG	2 cut(s)	498, 2026
HaeIII	GGCC	5 cut(s)	440, 953, 1368, 1391, 1904
HgaI	GACGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HindIII	AAGCTT	2 cut(s)	1508, 1710
HphI	GGTGA	6 cut(s)	111, 202, 259, 325, 845, 2024
Hpy166II	GTNNAC	7 cut(s)	693, 757, 841, 997, 1436, 1640, 2085
Hpy8I	GTNNAC	7 cut(s)	693, 757, 841, 997, 1436, 1640, 2085
Hpy99I	CGWCG	3 cut(s)	188, 194, 879
HpyAV	CCTTC	7 cut(s)	706, 1075, 1379, 1615, 1930, 1945, 2112
HpyCH4III	ACNGT	6 cut(s)	194, 599, 963, 1476, 1583, 2207
HpyCH4IV	ACGT	8 cut(s)	183, 406, 874, 999, 2033, 2073, 2081, 2287
HpyF10VI	GCNNNNNNNGC	6 cut(s)	306, 885, 1678, 1709, 2192, 2297
HpyF3I	CTNAG	4 cut(s)	497, 505, 1514, 2232
HpySE526I	ACGT	8 cut(s)	183, 406, 874, 999, 2033, 2073, 2081, 2287
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	547, 1306, 1810, 2046
LguI	GCTCTTC	1 cut(s)	770
LmnI	GCTCC	4 cut(s)	479, 1525, 1604, 2176
Lsp1109I	GCAGC	1 cut(s)	1715
LweI	GCATC	8 cut(s)	350, 491, 756, 778, 1152, 1291, 1617, 2119
MaeI	CTAG	3 cut(s)	317, 1616, 1760
MaeII	ACGT	8 cut(s)	183, 406, 874, 999, 2033, 2073, 2081, 2287
MaeIII	GTNAC	2 cut(s)	179, 1972
MalI	GATC	4 cut(s)	549, 1308, 1812, 2048
MboI	GATC	4 cut(s)	547, 1306, 1810, 2046
MfeI	CAATTG	2 cut(s)	367, 460
MflI	RGATCY	1 cut(s)	2046
MhlI	GDGCHC	5 cut(s)	412, 436, 1032, 1609, 2173
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	5 cut(s)	19, 944, 1119, 1241, 1920
MmeI	TCCRAC	2 cut(s)	585, 982
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	771
MroXI	GAANNNNTTC	3 cut(s)	1096, 1155, 1929
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	8 cut(s)	1187, 1239, 1400, 1611, 2093, 2202, 2315, 2327
MslI	CAYNNNNRTG	1 cut(s)	1101
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	2 cut(s)	1706, 1825
MspR9I	CCNGG	5 cut(s)	337, 437, 477, 2044, 2280
MunI	CAATTG	2 cut(s)	367, 460
MvaI	CCWGG	5 cut(s)	337, 437, 477, 2044, 2280
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	6 cut(s)	306, 885, 1678, 1709, 2192, 2297
NcoI	CCATGG	3 cut(s)	387, 441, 1649
NdeII	GATC	4 cut(s)	547, 1306, 1810, 2046
NheI	GCTAGC	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	1606
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	771
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	738
PagI	TCATGA	1 cut(s)	1947
PciSI	GCTCTTC	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 180
PdmI	GAANNNNTTC	3 cut(s)	1096, 1155, 1929
PfeI	GAWTC	8 cut(s)	15, 264, 455, 916, 1092, 1156, 1295, 1420
PfoI	TCCNGGA	1 cut(s)	2042
PkrI	GCNGC	2 cut(s)	706, 1705
PleI	GAGTC	5 cut(s)	19, 943, 1118, 1241, 1919
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	5 cut(s)	19, 943, 1118, 1241, 1919
Ppu21I	YACGTR	3 cut(s)	407, 2082, 2288
PshAI	GACNNNNGTC	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	1506
Psp6I	CCWGG	5 cut(s)	335, 435, 475, 2042, 2278
PspCI	CACGTG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	780
PspGI	CCWGG	5 cut(s)	335, 435, 475, 2042, 2278
PspN4I	GGNNCC	1 cut(s)	1606
PspPI	GGNCC	1 cut(s)	952
PsuI	RGATCY	1 cut(s)	2046
PvuII	CAGCTG	2 cut(s)	1706, 1825
RsaI	GTAC	5 cut(s)	359, 559, 692, 1017, 2084
RsaNI	GTAC	5 cut(s)	358, 558, 691, 1016, 2083
RseI	CAYNNNNRTG	1 cut(s)	1101
SapI	GCTCTTC	1 cut(s)	770
SaqAI	TTAA	8 cut(s)	1187, 1239, 1400, 1611, 2093, 2202, 2315, 2327
SatI	GCNGC	2 cut(s)	705, 1704
Sau3AI	GATC	4 cut(s)	547, 1306, 1810, 2046
Sau96I	GGNCC	1 cut(s)	952
SchI	GAGTC	5 cut(s)	19, 944, 1119, 1241, 1920
ScrFI	CCNGG	5 cut(s)	337, 437, 477, 2044, 2280
SduI	GDGCHC	5 cut(s)	412, 436, 1032, 1609, 2173
SfaNI	GCATC	8 cut(s)	350, 491, 756, 778, 1152, 1291, 1617, 2119
SfcI	CTRYAG	2 cut(s)	586, 1582
SfuI	TTCGAA	1 cut(s)	738
SmiI	ATTTAAAT	1 cut(s)	1188
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	1 cut(s)	1166
SmoI	CTYRAG	1 cut(s)	1166
SnaBI	TACGTA	1 cut(s)	2082
SsiI	CCGC	4 cut(s)	176, 704, 976, 1775
SspMI	CTAG	3 cut(s)	317, 1616, 1760
StyD4I	CCNGG	5 cut(s)	335, 435, 475, 2042, 2278
StyI	CCWWGG	4 cut(s)	349, 387, 441, 1649
SwaI	ATTTAAAT	1 cut(s)	1188
TaaI	ACNGT	6 cut(s)	194, 599, 963, 1476, 1583, 2207
TaiI	ACGT	8 cut(s)	186, 409, 877, 1002, 2036, 2076, 2084, 2290
TaqI	TCGA	9 cut(s)	113, 282, 412, 629, 684, 738, 1267, 1565, 1813
TatI	WGTACW	2 cut(s)	557, 1015
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	8 cut(s)	15, 264, 455, 916, 1092, 1156, 1295, 1420
Tru1I	TTAA	8 cut(s)	1187, 1239, 1400, 1611, 2093, 2202, 2315, 2327
Tru9I	TTAA	8 cut(s)	1187, 1239, 1400, 1611, 2093, 2202, 2315, 2327
TscAI	CASTG	2 cut(s)	12, 1586
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	1703
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	2 cut(s)	12, 1586
XagI	CCTNNNNNAGG	1 cut(s)	1619
XapI	RAATTY	5 cut(s)	115, 680, 1173, 1376, 1797
XceI	RCATGY	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	2 cut(s)	448, 805
XmnI	GAANNNNTTC	3 cut(s)	1096, 1155, 1929
XspI	CTAG	3 cut(s)	317, 1616, 1760
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.