Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015139

Physical Location & Seq

Genomic Coordinates Reverse (-)

29518935 .. 29521282

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGGCATTGCCAAGAATCTCCAAGACTCATCAAAACCTCTGGAAATCAATAAACCCCATCAACCCAACTGCGTTCTTTTCCCTCATCTTCACCAACATCCACACTCCCTCATCGAATTCACCCAGACCCATTTGCACCAAAACCCACTCTGACCCTTTTCTTCCTAATCCAGACGTGGGTCACGTCGCCGATGGTCTCATTTCCATCTTCACCAAGCAACCTTTCTCCCCAGACAACCCAGATTTGAAGCATTTTGCTTCAAGAATCACCCCAAAAGCAGTCGAATGTGTGCTGAATGGCCTCAAGAGCTGGAAGCTAGCTCACTCGTTCTTCAACTGGGCTTCAAACCAATGTGGGTACAAGCACAATTGCTATACCTACAATGCCATGGCTTCACACCTTTCACGTGCTCGACAAAATGCCCCAATGAGAGCCCTGGCCATGGAAGTTGTGGATTCCAATTGTTATATGACCCCTGGAGCTTGGTTGGTTGAAGAAGCCAACATTTTGTTTGATCAAGTTTGTACAAAGGGTCTTTGTGTTCCAAATAGCTATAGCTATAACTGTTTGTTGGAGGCTATATCCAAGTCTGGTTCGATTGAGTTGCTTGAGAAGCGAATGAAAGAAATGGGGGATTCTGGTTTGGAATTCGATAGGTACACATTGACTGCGGCGTTGAAGGTTTATTGCAATGCAGGGAAGTTCGAAAAGGCTTTGAATGTTTACAATGAGATGCATGAGAAGAGCTGGGTGGATGCACATGCCGTGTCTATCTTGGTGTTGCATTTGAGCAAGTCGGGTGAGGTGGACAAGGCTTTTGATTTGATTGAAAGAATGGAACGTCGCAATCTTGGCTTGAATGACAAGACATTTCGTGTTTTGATTCATGGGTTTGTGAGGGAGTCCAGAGTGGATAAGGCCCTCCAACTGTTTGATAAAATGCGGAAGTCAGGTTTCTCTGTTGACGTTTCTCTTTATGATGTACTGATTGGAGGGCTCTGTAAGAATAGAGAGATTGAGAAAGCCTTGTCTATGTACTCGGAAATGAAGGATTTGGGAATCCATTCTGATGTTAGAGTCCTTACGAAGCTCATATTAGCTTGTTCTGATGAAAGGGAAATGATTCGGATGCTTGAGGAAAGTCAGGAAGATTTAAATGAAGAGGATATGCTTTTGCTTTGCAGTTCTGTGCTGAATAGTCTGGTTAATAACGACTCCATTGACAGAGCTTATCGACTGCTTCAGGCAATGATGAAAAAAGAATCTGATGCTGATCCAGTAGTAAAGAAAAAGGTTCGTCCTACCACCCGTTCATTTGAAATTGTTATTGATGGCCTCCTAAAATTTGGTAAGTTGGCCGTGGCATTAAGCCTTTTGGAAGATATGAATCAGATTGGGTGTAAACCAAATGTAGTAATTTACAATAATGTAATTGATGAACTGTGCAAATCAAATAGATTGGAGGAAAGTTATAAGCTTCTGAGAGAGATGGAGCAATCTGGAGTTGAACCAACTCATTTTACCCATAACTCGATATATGGTTGCCACTGTAGAAGAGAGGATGTTCAAGGAGCCCTTAACCTAGTGAAGGAGATGCGTGTTTGTGGACATGAACCATGGAAAAAACATTCCACCTTGCTCGTGAAGCAGTTGTGCGAACATGGAAAGGCAGCTGAAGCTTGTAATTTTCTTGATAAAATGGTTGAAGTAAGTTTTGTCCCTCGTCTAGTTTCCTATTCAGCGGTTATTAGTGGATTACTCAAAATTCAAGAAGTAGATCGAGCTTTACAGCTGTTTCAGGACATCTGTGCTGATGGCTATTGTCCTGATGTAGTTTTCTATAACATAATGATAAATGGTCTATGTAAGGCCAAAAGAGTCTCCGAAGCAGAAAACTTTCTGAAGGAAATGGTCATGAAGGGGCTTGTTCCCTCAGTTGTAACCTACAATCTGCTGATAAATGGATATTGTAAAAACGGTGATGTGGATAAAGCCATGACGTGCCTCTCCAGGATCTTTGATGAAGCCAGAGAACCTAACGTGATTACATATACAACCTTAATAGATGGATTATGCAATGCTGGAAGGATTGATGATGCTCTTGTGCTTTGGAACGACATGGCGAAGAAAGGATGTGCTCCAAACAGAATTGCTTTTATGGCTCTTATTAACGGTCTTTGCAAGTGTGGTAAGCCTGCTGAGGCTTTAGCCTATCTTCGTGAGATGGAAGAGAAGGAAATGAAACCTGGGATACATGTATATTCAGCAGTAATAAGTGCTTTAATCTCTAATTTAAACCTTCCCCCTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

771

Amino Acids

86.72

Weight (kDa)

6.85

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	182 - 231	1.1e-06	PPR repeat family
TPR_24	PF23276	192 - 313	3e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	256 - 300	1e-07	PPR repeat family
TPR_24	PF23276	263 - 348	4.8e-07	Fungal tetratrico peptide repeats
PPR	PF01535	290 - 319	3.4e-06	PPR repeat
PPR_2	PF13041	322 - 368	1.4e-08	PPR repeat family
PPR	PF01535	326 - 354	2.1e-06	PPR repeat
PPR_long	PF17177	454 - 569	5.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	457 - 514	1.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	466 - 498	8.6e-11	PPR repeat
PPR_2	PF13041	469 - 517	4.1e-13	PPR repeat family
PPR_long	PF17177	587 - 675	4.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	598 - 658	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	605 - 638	1.3e-12	PPR repeat
PPR_2	PF13041	609 - 658	4.7e-18	PPR repeat family
PPR	PF01535	612 - 642	9.1e-08	PPR repeat
PPR_1	PF12854	640 - 666	3.1e-12	PPR repeat
PPR_2	PF13041	644 - 693	2.5e-17	PPR repeat family
PPR	PF01535	647 - 671	3.3e-07	PPR repeat
PPR_1	PF12854	678 - 707	4e-13	PPR repeat
PPR_3	PF13812	678 - 724	9.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	679 - 728	8e-18	PPR repeat family
PPR	PF01535	682 - 712	5.4e-08	PPR repeat
PPR_1	PF12854	710 - 743	8.3e-08	PPR repeat
PPR_2	PF13041	714 - 761	1.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08310 AT5G08310
fragaria_vesca	FvH4_4g11722 FvH4_4g11723
prunus_persica	Prupe.7G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408911
rosa_laevigata	RLG00000008609
rosa_multiflora	Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353290
rosa_rugosa	Rorug04G0088600
rosa_samantha	Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800
rosa_wichuraiana	Rw4G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1473
AciI	CCGC	3 cut(s)	671, 943, 1742
AclWI	GGATC	2 cut(s)	1268, 2021
AcoI	YGGCCR	2 cut(s)	438, 1356
AcsI	RAATTY	4 cut(s)	115, 647, 1343, 1764
AcuI	CTGAAG	3 cut(s)	1226, 1695, 1922
AcvI	CACGTG	1 cut(s)	407
AfaI	GTAC	5 cut(s)	359, 526, 659, 984, 1037
AfiI	CCNNNNNNNGG	3 cut(s)	176, 442, 1588
AflIII	ACRYGT	1 cut(s)	2254
AjiI	CACGTC	3 cut(s)	175, 184, 2001
AjnI	CCWGG	4 cut(s)	435, 475, 2009, 2245
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
Alw21I	GWGCWC	2 cut(s)	412, 2140
Alw26I	GTCTC	2 cut(s)	200, 1885
AlwI	GGATC	2 cut(s)	1268, 2021
AoxI	GGCC	6 cut(s)	298, 438, 918, 1333, 1356, 1869
ApeKI	GCWGC	1 cut(s)	1670
ApoI	RAATTY	4 cut(s)	115, 647, 1343, 1764
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
Asp700I	GAANNNNTTC	3 cut(s)	1063, 1122, 1896
AspS9I	GGNCC	1 cut(s)	919
AsuHPI	GGTGA	6 cut(s)	82, 111, 202, 259, 812, 1991
AsuII	TTCGAA	1 cut(s)	705
AsuNHI	GCTAGC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	436, 999, 1576
BauI	CACGAG	1 cut(s)	1640
BbrPI	CACGTG	1 cut(s)	407
Bbv12I	GWGCWC	2 cut(s)	412, 2140
BbvCI	CCTCAGC	1 cut(s)	2199
BbvI	GCAGC	1 cut(s)	1682
BccI	CCATC	8 cut(s)	65, 185, 212, 1325, 1483, 1808, 2060, 2218
BceAI	ACGGC	2 cut(s)	749, 1343
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	4 cut(s)	437, 477, 2011, 2247
BciVI	GTATCC	1 cut(s)	2244
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	200, 1885
BfaI	CTAG	3 cut(s)	317, 1583, 1727
BfmI	CTRYAG	2 cut(s)	553, 1549
BfuI	GTATCC	1 cut(s)	2244
BisI	GCNGC	2 cut(s)	672, 1671
BlsI	GCNGC	2 cut(s)	673, 1672
Bme1390I	CCNGG	4 cut(s)	437, 477, 2011, 2247
BmgBI	CACGTC	3 cut(s)	175, 184, 2001
BmgT120I	GGNCC	1 cut(s)	919
BmiI	GGNNCC	1 cut(s)	1573
BmrFI	CCNGG	4 cut(s)	437, 477, 2011, 2247
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	6 cut(s)	723, 745, 1119, 1258, 1584, 2086
BmtI	GCTAGC	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	177
BpmI	CTGGAG	3 cut(s)	498, 1521, 1993
Bpu10I	CCTNAGC	1 cut(s)	2199
Bpu14I	TTCGAA	1 cut(s)	705
BpuEI	CTTGAG	3 cut(s)	287, 629, 1154
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	2 cut(s)	1272, 1386
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	7 cut(s)	387, 435, 441, 475, 1359, 1616, 2246
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 442, 1588
Bse1I	ACTGG	2 cut(s)	341, 1277
Bse3DI	GCAATG	4 cut(s)	5, 697, 1254, 2083
Bse8I	GATNNNNATC	2 cut(s)	1272, 1386
BseBI	CCWGG	4 cut(s)	437, 477, 2011, 2247
BseDI	CCNNGG	7 cut(s)	387, 435, 441, 475, 1359, 1616, 2246
BseGI	GGATG	5 cut(s)	96, 760, 1134, 1567, 2138
BseJI	GATNNNNATC	2 cut(s)	1272, 1386
BseLI	CCNNNNNNNGG	3 cut(s)	176, 442, 1588
BseMI	GCAATG	4 cut(s)	5, 697, 1254, 2083
BseMII	CTCAG	3 cut(s)	1472, 1947, 2190
BseNI	ACTGG	2 cut(s)	341, 1277
BseXI	GCAGC	1 cut(s)	1682
BseYI	CCCAGC	1 cut(s)	747
BshFI	GGCC	6 cut(s)	300, 440, 920, 1335, 1358, 1871
BsiHKAI	GWGCWC	2 cut(s)	412, 2140
BslFI	GGGAC	1 cut(s)	1703
BslI	CCNNNNNNNGG	3 cut(s)	176, 442, 1588
BsmAI	GTCTC	2 cut(s)	200, 1885
BsmFI	GGGAC	1 cut(s)	1703
BsnI	GGCC	6 cut(s)	300, 440, 920, 1335, 1358, 1871
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1286I	GDGCHC	5 cut(s)	412, 436, 999, 1576, 2140
Bsp1407I	TGTACA	1 cut(s)	524
Bsp143I	GATC	4 cut(s)	514, 1273, 1777, 2013
Bsp19I	CCATGG	3 cut(s)	387, 441, 1616
BspACI	CCGC	3 cut(s)	671, 943, 1742
BspANI	GGCC	6 cut(s)	300, 440, 920, 1335, 1358, 1871
BspCNI	CTCAG	3 cut(s)	1473, 1946, 2191
BspHI	TCATGA	1 cut(s)	1914
BspLI	GGNNCC	1 cut(s)	1573
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	1268, 2021
BspQI	GCTCTTC	1 cut(s)	737
BspT104I	TTCGAA	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	4 cut(s)	5, 697, 1254, 2083
BsrGI	TGTACA	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	341, 1277
BssECI	CCNNGG	7 cut(s)	387, 435, 441, 475, 1359, 1616, 2246
BssMI	GATC	4 cut(s)	514, 1273, 1777, 2013
BssSI	CACGAG	1 cut(s)	1640
BssT1I	CCWWGG	3 cut(s)	387, 441, 1616
Bst2BI	CACGAG	1 cut(s)	1640
Bst2UI	CCWGG	4 cut(s)	437, 477, 2011, 2247
Bst4CI	ACNGT	6 cut(s)	566, 930, 1443, 1550, 1979, 2174
Bst6I	CTCTTC	4 cut(s)	737, 1155, 1549, 2223
BstAUI	TGTACA	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	2 cut(s)	318, 2196
BstDEI	CTNAG	3 cut(s)	1481, 1933, 2199
BstDSI	CCRYGG	4 cut(s)	387, 441, 1359, 1616
BstENI	CCTNNNNNAGG	1 cut(s)	1586
BstF5I	GGATG	5 cut(s)	96, 760, 1134, 1567, 2138
BstKTI	GATC	4 cut(s)	517, 1276, 1780, 2016
BstMAI	GTCTC	2 cut(s)	200, 1885
BstMBI	GATC	4 cut(s)	514, 1273, 1777, 2013
BstMWI	GCNNNNNNNGC	6 cut(s)	306, 613, 852, 1645, 1676, 2159
BstNI	CCWGG	4 cut(s)	437, 477, 2011, 2247
BstNSI	RCATGY	2 cut(s)	764, 2258
BstPAI	GACNNNNGTC	1 cut(s)	177
BstSCI	CCNGG	4 cut(s)	435, 475, 2009, 2245
BstSFI	CTRYAG	2 cut(s)	553, 1549
BstV1I	GCAGC	1 cut(s)	1682
BstX2I	RGATCY	1 cut(s)	2013
BstYI	RGATCY	1 cut(s)	2013
BsuI	GTATCC	1 cut(s)	2244
BsuRI	GGCC	6 cut(s)	300, 440, 920, 1335, 1358, 1871
BtgI	CCRYGG	4 cut(s)	387, 441, 1359, 1616
BtrI	CACGTC	3 cut(s)	175, 184, 2001
BtsCI	GGATG	5 cut(s)	96, 760, 1134, 1567, 2138
BtsIMutI	CAGTG	1 cut(s)	1546
Cac8I	GCNNGC	2 cut(s)	318, 2196
CciI	TCATGA	1 cut(s)	1914
Cfr13I	GGNCC	1 cut(s)	919
Csp6I	GTAC	5 cut(s)	358, 525, 658, 983, 1036
CviQI	GTAC	5 cut(s)	358, 525, 658, 983, 1036
DdeI	CTNAG	3 cut(s)	1481, 1933, 2199
DpnI	GATC	4 cut(s)	516, 1275, 1779, 2015
DpnII	GATC	4 cut(s)	514, 1273, 1777, 2013
DraI	TTTAAA	2 cut(s)	1155, 2295
EaeI	YGGCCR	2 cut(s)	438, 1356
Eam1104I	CTCTTC	4 cut(s)	737, 1155, 1549, 2223
EarI	CTCTTC	4 cut(s)	737, 1155, 1549, 2223
Eco130I	CCWWGG	3 cut(s)	387, 441, 1616
Eco24I	GRGCYC	3 cut(s)	436, 999, 1576
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	1226, 1695, 1922
Eco72I	CACGTG	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	1586
EcoO109I	RGGNCCY	1 cut(s)	919
EcoRI	GAATTC	2 cut(s)	115, 647
EcoRII	CCWGG	4 cut(s)	435, 475, 2009, 2245
EcoT14I	CCWWGG	3 cut(s)	387, 441, 1616
EcoT22I	ATGCAT	1 cut(s)	738
EcoT38I	GRGCYC	3 cut(s)	436, 999, 1576
ErhI	CCWWGG	3 cut(s)	387, 441, 1616
FalI	AAGNNNNNCTT	2 cut(s)	1560, 1592
FaqI	GGGAC	1 cut(s)	1703
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	672, 1671
FokI	GGATG	5 cut(s)	83, 767, 1141, 1574, 2145
FriOI	GRGCYC	3 cut(s)	436, 999, 1576
Fsp4HI	GCNGC	2 cut(s)	672, 1671
FspBI	CTAG	3 cut(s)	317, 1583, 1727
GluI	GCNGC	2 cut(s)	672, 1671
GsaI	CCCAGC	1 cut(s)	751
GsuI	CTGGAG	3 cut(s)	498, 1521, 1993
HaeIII	GGCC	6 cut(s)	300, 440, 920, 1335, 1358, 1871
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	2 cut(s)	1475, 1677
HphI	GGTGA	6 cut(s)	82, 111, 202, 259, 812, 1991
Hpy166II	GTNNAC	6 cut(s)	660, 724, 808, 964, 1403, 1607
Hpy8I	GTNNAC	6 cut(s)	660, 724, 808, 964, 1403, 1607
Hpy99I	CGWCG	2 cut(s)	188, 846
HpyAV	CCTTC	8 cut(s)	673, 1042, 1582, 1897, 1912, 2079, 2227, 2309
HpyCH4III	ACNGT	6 cut(s)	566, 930, 1443, 1550, 1979, 2174
HpyCH4IV	ACGT	7 cut(s)	174, 183, 406, 841, 966, 2000, 2040
HpyF10VI	GCNNNNNNNGC	6 cut(s)	306, 613, 852, 1645, 1676, 2159
HpyF3I	CTNAG	3 cut(s)	1481, 1933, 2199
HpySE526I	ACGT	7 cut(s)	174, 183, 406, 841, 966, 2000, 2040
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	514, 1273, 1777, 2013
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	4 cut(s)	479, 1492, 1571, 2143
Lsp1109I	GCAGC	1 cut(s)	1682
LweI	GCATC	6 cut(s)	723, 745, 1119, 1258, 1584, 2086
MaeI	CTAG	3 cut(s)	317, 1583, 1727
MaeII	ACGT	7 cut(s)	174, 183, 406, 841, 966, 2000, 2040
MaeIII	GTNAC	2 cut(s)	179, 1939
MalI	GATC	4 cut(s)	516, 1275, 1779, 2015
MboI	GATC	4 cut(s)	514, 1273, 1777, 2013
MfeI	CAATTG	2 cut(s)	367, 460
MflI	RGATCY	1 cut(s)	2013
MhlI	GDGCHC	5 cut(s)	412, 436, 999, 1576, 2140
MlsI	TGGCCA	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	5 cut(s)	19, 911, 1086, 1208, 1887
MmeI	TCCRAC	2 cut(s)	552, 949
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	738
MroXI	GAANNNNTTC	3 cut(s)	1063, 1122, 1896
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	8 cut(s)	1154, 1206, 1367, 1578, 2060, 2169, 2282, 2294
MslI	CAYNNNNRTG	1 cut(s)	1068
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	3 cut(s)	1673, 1742, 1792
MspR9I	CCNGG	4 cut(s)	437, 477, 2011, 2247
MunI	CAATTG	2 cut(s)	367, 460
MvaI	CCWGG	4 cut(s)	437, 477, 2011, 2247
MwoI	GCNNNNNNNGC	6 cut(s)	306, 613, 852, 1645, 1676, 2159
NcoI	CCATGG	3 cut(s)	387, 441, 1616
NdeII	GATC	4 cut(s)	514, 1273, 1777, 2013
NheI	GCTAGC	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	1573
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	2 cut(s)	764, 2258
NspV	TTCGAA	1 cut(s)	705
PagI	TCATGA	1 cut(s)	1914
PciI	ACATGT	1 cut(s)	2254
PciSI	GCTCTTC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	3 cut(s)	1063, 1122, 1896
PfeI	GAWTC	9 cut(s)	15, 264, 455, 635, 883, 1059, 1123, 1262, 1387
PfoI	TCCNGGA	1 cut(s)	2009
PkrI	GCNGC	2 cut(s)	673, 1672
PleI	GAGTC	5 cut(s)	19, 910, 1085, 1208, 1886
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	5 cut(s)	19, 910, 1085, 1208, 1886
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	1 cut(s)	2254
PshAI	GACNNNNGTC	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	1473
Psp6I	CCWGG	4 cut(s)	435, 475, 2009, 2245
PspCI	CACGTG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	4 cut(s)	435, 475, 2009, 2245
PspN4I	GGNNCC	1 cut(s)	1573
PspPI	GGNCC	1 cut(s)	919
PsuI	RGATCY	1 cut(s)	2013
PvuII	CAGCTG	2 cut(s)	1673, 1792
RsaI	GTAC	5 cut(s)	359, 526, 659, 984, 1037
RsaNI	GTAC	5 cut(s)	358, 525, 658, 983, 1036
RseI	CAYNNNNRTG	1 cut(s)	1068
SapI	GCTCTTC	1 cut(s)	737
SaqAI	TTAA	8 cut(s)	1154, 1206, 1367, 1578, 2060, 2169, 2282, 2294
SatI	GCNGC	2 cut(s)	672, 1671
Sau3AI	GATC	4 cut(s)	514, 1273, 1777, 2013
Sau96I	GGNCC	1 cut(s)	919
SchI	GAGTC	5 cut(s)	19, 911, 1086, 1208, 1887
ScrFI	CCNGG	4 cut(s)	437, 477, 2011, 2247
SduI	GDGCHC	5 cut(s)	412, 436, 999, 1576, 2140
SfaNI	GCATC	6 cut(s)	723, 745, 1119, 1258, 1584, 2086
SfcI	CTRYAG	2 cut(s)	553, 1549
SfuI	TTCGAA	1 cut(s)	705
SmiI	ATTTAAAT	1 cut(s)	1155
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	3 cut(s)	302, 608, 1133
SmoI	CTYRAG	3 cut(s)	302, 608, 1133
SsiI	CCGC	3 cut(s)	671, 943, 1742
SspMI	CTAG	3 cut(s)	317, 1583, 1727
StyD4I	CCNGG	4 cut(s)	435, 475, 2009, 2245
StyI	CCWWGG	3 cut(s)	387, 441, 1616
SwaI	ATTTAAAT	1 cut(s)	1155
TaaI	ACNGT	6 cut(s)	566, 930, 1443, 1550, 1979, 2174
TaiI	ACGT	7 cut(s)	177, 186, 409, 844, 969, 2003, 2043
TaqI	TCGA	9 cut(s)	113, 282, 412, 596, 651, 705, 1234, 1532, 1780
TatI	WGTACW	3 cut(s)	524, 982, 1035
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	9 cut(s)	15, 264, 455, 635, 883, 1059, 1123, 1262, 1387
Tru1I	TTAA	8 cut(s)	1154, 1206, 1367, 1578, 2060, 2169, 2282, 2294
Tru9I	TTAA	8 cut(s)	1154, 1206, 1367, 1578, 2060, 2169, 2282, 2294
TscAI	CASTG	1 cut(s)	1553
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	1670
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	1 cut(s)	1553
XagI	CCTNNNNNAGG	1 cut(s)	1586
XapI	RAATTY	4 cut(s)	115, 647, 1343, 1764
XceI	RCATGY	2 cut(s)	764, 2258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	3 cut(s)	1063, 1122, 1896
XspI	CTAG	3 cut(s)	317, 1583, 1727
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.