Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000300.1

Orthogroup ID

OG0015139

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2113

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

atggaagttgtggattccaattgttatatgacccctggagctttgggtttctttctaagatgcttagggagtgtgcagttggttgaagaagccaacattttgtttgatcaagtttgtacaaagggtctttgtgttccaaatagctatagctataactgtttgttggaggctatatccaagtctggttcgattgagttgcttgagaagcgaatgaaagaaatgggggagtctggtttggaattcgataggtacacattgactgcggcgttgaaggtttattgcaatgcagggaagttcgaaaaggctttgaatgtttacaatgagatgcatgagaagagctgggtggatgcacatgccttgtctatcttggtgttgcatttgagcaagtcgggtgaggtggacaaggcttttgatttaattgaaagaatggaacgtcgcaatcttggcttgaatgacaagacatttcgtgttttgattcatgggtttgtgagggagtccagagtggataaggccctccaactgtttgataaaatgcggaagtcaggtttctctgttgacgtttctctttatgatgtactgattggagggctctgtaagaatagagagattgagaaagccttgtctatgtattcggaaatgaaggatttgagaatccattctgatgttagagtccttaagaagctcatattagcttgttctgataaaagggaaatgattcagatgcttgaggaaagtcaggaacatttaaatgaagaggatatgcttttgctttgcagttctgtgctgaatagtctggttactaacgactccattgacagagcttatcgactgcttcaagcaatgatgaagagagaatctgatgctgatccagtggtaaagaaaaaggtacgtcctaccacccgttcatttgaaattgttattgatggccttctaaaatttggtaagttggccgtggcattaagccttttggaagatatgaatcagattgggtgtaaaccaaatgtagtaatttacaataatgtaattgatgaactgtgcaaatcaaatagattggaggaaagttataagcttctgagagagatggagcaatctggagttgaaccaacacattttacccataacttgatatatggttgccactgtagaagagaggatgttcaaggagcccttaacctagtgaaggagatgcgtgtttgtggacatgaaccatggaaaaaacattccaccttgctcgtgaagcagttgtgcgaacatggaaaggcagctgaagcttgtaattttcttgataaaatggttgaagtaagttttgtccctcgtctagtttcctattctgcggttattagtggattactcaaaattcaagaagtagatcgagctttacagctgtttcaggacatctgtgctgatggctattgtcctgatgtagttttctataacataatgataaatggtctatgtaaggccaaaagagtctcagaagcagaaaactttctgaaggaaatggtcatgaaggggcttgttccctcagttgtaacctacaatctgctgataaatggatattgtaaaaacagtgatgtggataaagccatgacgtgcctctccaggatctttgatgaagccagagaacctaacgtgattacatatacaaccttaatagatggattttgcaatgctggaaggattgatgatgctcttgtgctttggaacgacatggcgaagaaaggatgtgctccaaacagaattgcttttatggctcttattaacggtctttgcaagtgtggtaagcctgctgaggctttagcctatcttcgtgagatggaagagaaggaaatgaaacctgggatacgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

616

Amino Acids

69.75

Weight (kDa)

6.25

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08310 AT5G08310
fragaria_vesca	FvH4_4g11722 FvH4_4g11723
prunus_persica	Prupe.7G271800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0408911
rosa_laevigata	RLG00000008609
rosa_multiflora	Rmu_sc0037819.1_g000001 Rmu_ssc0000300.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353290
rosa_rugosa	Rorug04G0088600
rosa_samantha	Rh4AG152300 Rh4BG149800 Rh4CG160700 Rh4DG145800
rosa_wichuraiana	Rw4G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1065
AciI	CCGC	3 cut(s)	263, 535, 1334
AclWI	GGATC	2 cut(s)	860, 1613
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	3 cut(s)	239, 935, 1356
AcuI	CTGAAG	2 cut(s)	1287, 1514
AfaI	GTAC	4 cut(s)	118, 251, 576, 888
AfiI	CCNNNNNNNGG	1 cut(s)	1180
AflII	CTTAAG	1 cut(s)	674
AjiI	CACGTC	1 cut(s)	1593
AjnI	CCWGG	3 cut(s)	34, 1601, 1837
Alw21I	GWGCWC	1 cut(s)	1732
Alw26I	GTCTC	1 cut(s)	1477
AlwI	GGATC	2 cut(s)	860, 1613
AoxI	GGCC	4 cut(s)	510, 925, 948, 1461
ApeKI	GCWGC	1 cut(s)	1262
ApoI	RAATTY	3 cut(s)	239, 935, 1356
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	3 cut(s)	655, 714, 1488
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	591, 1168
BauI	CACGAG	1 cut(s)	1232
Bbv12I	GWGCWC	1 cut(s)	1732
BbvCI	CCTCAGC	1 cut(s)	1791
BbvI	GCAGC	1 cut(s)	1274
BccI	CCATC	5 cut(s)	917, 1075, 1400, 1652, 1810
BceAI	ACGGC	1 cut(s)	935
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	3 cut(s)	36, 1603, 1839
BciVI	GTATCC	1 cut(s)	1836
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	1477
BfaI	CTAG	2 cut(s)	1175, 1319
BfmI	CTRYAG	2 cut(s)	145, 1141
BfrI	CTTAAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	1836
BisI	GCNGC	2 cut(s)	264, 1263
BlsI	GCNGC	2 cut(s)	265, 1264
Bme1390I	CCNGG	3 cut(s)	36, 1603, 1839
BmgBI	CACGTC	1 cut(s)	1593
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	1165
BmrFI	CCNGG	3 cut(s)	36, 1603, 1839
BmsI	GCATC	7 cut(s)	50, 315, 337, 711, 850, 1176, 1678
BpmI	CTGGAG	3 cut(s)	57, 1113, 1585
Bpu10I	CCTNAGC	2 cut(s)	64, 1791
Bpu14I	TTCGAA	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	221, 746
BsaBI	GATNNNNATC	2 cut(s)	864, 978
BsaJI	CCNNGG	4 cut(s)	34, 951, 1208, 1838
Bsc4I	CCNNNNNNNGG	1 cut(s)	1180
Bse1I	ACTGG	1 cut(s)	869
Bse3DI	GCAATG	3 cut(s)	289, 846, 1675
Bse8I	GATNNNNATC	2 cut(s)	864, 978
BseBI	CCWGG	3 cut(s)	36, 1603, 1839
BseDI	CCNNGG	4 cut(s)	34, 951, 1208, 1838
BseGI	GGATG	3 cut(s)	352, 1159, 1730
BseJI	GATNNNNATC	2 cut(s)	864, 978
BseLI	CCNNNNNNNGG	1 cut(s)	1180
BseMI	GCAATG	3 cut(s)	289, 846, 1675
BseMII	CTCAG	4 cut(s)	1064, 1488, 1539, 1782
BseNI	ACTGG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	1274
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	95
BshFI	GGCC	4 cut(s)	512, 927, 950, 1463
BsiHKAI	GWGCWC	1 cut(s)	1732
BslFI	GGGAC	1 cut(s)	1295
BslI	CCNNNNNNNGG	1 cut(s)	1180
BsmAI	GTCTC	1 cut(s)	1477
BsmFI	GGGAC	1 cut(s)	1295
BsnI	GGCC	4 cut(s)	512, 927, 950, 1463
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	3 cut(s)	591, 1168, 1732
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	106, 865, 1369, 1605
Bsp19I	CCATGG	1 cut(s)	1208
BspACI	CCGC	3 cut(s)	263, 535, 1334
BspANI	GGCC	4 cut(s)	512, 927, 950, 1463
BspCNI	CTCAG	4 cut(s)	1065, 1487, 1538, 1783
BspHI	TCATGA	1 cut(s)	1506
BspLI	GGNNCC	1 cut(s)	1165
BspPI	GGATC	2 cut(s)	860, 1613
BspQI	GCTCTTC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	3 cut(s)	289, 846, 1675
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	869
BssECI	CCNNGG	4 cut(s)	34, 951, 1208, 1838
BssMI	GATC	4 cut(s)	106, 865, 1369, 1605
BssSI	CACGAG	1 cut(s)	1232
BssT1I	CCWWGG	1 cut(s)	1208
Bst2BI	CACGAG	1 cut(s)	1232
Bst2UI	CCWGG	3 cut(s)	36, 1603, 1839
Bst4CI	ACNGT	6 cut(s)	158, 522, 1035, 1142, 1571, 1766
Bst6I	CTCTTC	5 cut(s)	329, 747, 842, 1141, 1815
BstAFI	CTTAAG	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	1788
BstDEI	CTNAG	6 cut(s)	56, 64, 1073, 1474, 1525, 1791
BstDSI	CCRYGG	2 cut(s)	951, 1208
BstENI	CCTNNNNNAGG	1 cut(s)	1178
BstF5I	GGATG	3 cut(s)	352, 1159, 1730
BstKTI	GATC	4 cut(s)	109, 868, 1372, 1608
BstMAI	GTCTC	1 cut(s)	1477
BstMBI	GATC	4 cut(s)	106, 865, 1369, 1605
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 444, 1237, 1268, 1751
BstNI	CCWGG	3 cut(s)	36, 1603, 1839
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	34, 1601, 1837
BstSFI	CTRYAG	2 cut(s)	145, 1141
BstV1I	GCAGC	1 cut(s)	1274
BstX2I	RGATCY	1 cut(s)	1605
BstYI	RGATCY	1 cut(s)	1605
BsuI	GTATCC	1 cut(s)	1836
BsuRI	GGCC	4 cut(s)	512, 927, 950, 1463
BtgI	CCRYGG	2 cut(s)	951, 1208
BtrI	CACGTC	1 cut(s)	1593
BtsCI	GGATG	3 cut(s)	352, 1159, 1730
BtsIMutI	CAGTG	3 cut(s)	876, 1138, 1576
Cac8I	GCNNGC	1 cut(s)	1788
CciI	TCATGA	1 cut(s)	1506
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	4 cut(s)	117, 250, 575, 887
CviAII	CATG	9 cut(s)	329, 353, 479, 1202, 1209, 1253, 1507, 1588, 1711
CviQI	GTAC	4 cut(s)	117, 250, 575, 887
DdeI	CTNAG	6 cut(s)	56, 64, 1073, 1474, 1525, 1791
DpnI	GATC	4 cut(s)	108, 867, 1371, 1607
DpnII	GATC	4 cut(s)	106, 865, 1369, 1605
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	5 cut(s)	329, 747, 842, 1141, 1815
EarI	CTCTTC	5 cut(s)	329, 747, 842, 1141, 1815
Eco130I	CCWWGG	1 cut(s)	1208
Eco24I	GRGCYC	2 cut(s)	591, 1168
Eco57I	CTGAAG	2 cut(s)	1287, 1514
EcoNI	CCTNNNNNAGG	1 cut(s)	1178
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	34, 1601, 1837
EcoT14I	CCWWGG	1 cut(s)	1208
EcoT22I	ATGCAT	1 cut(s)	330
EcoT38I	GRGCYC	2 cut(s)	591, 1168
ErhI	CCWWGG	1 cut(s)	1208
FaeI	CATG	9 cut(s)	332, 356, 482, 1205, 1212, 1256, 1510, 1591, 1714
FalI	AAGNNNNNCTT	2 cut(s)	1152, 1184
FaqI	GGGAC	1 cut(s)	1295
FatI	CATG	9 cut(s)	328, 352, 478, 1201, 1208, 1252, 1506, 1587, 1710
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	264, 1263
FokI	GGATG	3 cut(s)	359, 1166, 1737
FriOI	GRGCYC	2 cut(s)	591, 1168
Fsp4HI	GCNGC	2 cut(s)	264, 1263
FspBI	CTAG	2 cut(s)	1175, 1319
GluI	GCNGC	2 cut(s)	264, 1263
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	3 cut(s)	57, 1113, 1585
HaeIII	GGCC	4 cut(s)	512, 927, 950, 1463
Hin1II	CATG	9 cut(s)	332, 356, 482, 1205, 1212, 1256, 1510, 1591, 1714
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	2 cut(s)	1067, 1269
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	6 cut(s)	252, 316, 400, 556, 995, 1199
Hpy188I	TCNGA	9 cut(s)	634, 661, 700, 720, 859, 984, 1074, 1477, 1494
Hpy8I	GTNNAC	6 cut(s)	252, 316, 400, 556, 995, 1199
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	8 cut(s)	265, 634, 938, 1174, 1489, 1504, 1671, 1819
HpyCH4III	ACNGT	6 cut(s)	158, 522, 1035, 1142, 1571, 1766
HpyCH4IV	ACGT	6 cut(s)	433, 558, 889, 1592, 1632, 1846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 444, 1237, 1268, 1751
HpyF3I	CTNAG	6 cut(s)	56, 64, 1073, 1474, 1525, 1791
HpySE526I	ACGT	6 cut(s)	433, 558, 889, 1592, 1632, 1846
Hsp92II	CATG	9 cut(s)	332, 356, 482, 1205, 1212, 1256, 1510, 1591, 1714
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	106, 865, 1369, 1605
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	4 cut(s)	38, 1084, 1163, 1735
Lsp1109I	GCAGC	1 cut(s)	1274
LweI	GCATC	7 cut(s)	50, 315, 337, 711, 850, 1176, 1678
MaeI	CTAG	2 cut(s)	1175, 1319
MaeII	ACGT	6 cut(s)	433, 558, 889, 1592, 1632, 1846
MaeIII	GTNAC	2 cut(s)	796, 1531
MalI	GATC	4 cut(s)	108, 867, 1371, 1607
MboI	GATC	4 cut(s)	106, 865, 1369, 1605
MboII	GAAGA	9 cut(s)	98, 346, 764, 859, 983, 1158, 1729, 1799, 1832
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	1605
MhlI	GDGCHC	3 cut(s)	591, 1168, 1732
MlyI	GAGTC	5 cut(s)	236, 503, 678, 800, 1479
MmeI	TCCRAC	2 cut(s)	144, 541
Mph1103I	ATGCAT	1 cut(s)	330
MroXI	GAANNNNTTC	3 cut(s)	655, 714, 1488
MseI	TTAA	7 cut(s)	416, 675, 746, 959, 1170, 1652, 1761
MslI	CAYNNNNRTG	2 cut(s)	660, 747
MspA1I	CMGCKG	2 cut(s)	1265, 1384
MspCI	CTTAAG	1 cut(s)	674
MspR9I	CCNGG	3 cut(s)	36, 1603, 1839
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	3 cut(s)	36, 1603, 1839
MwoI	GCNNNNNNNGC	5 cut(s)	205, 444, 1237, 1268, 1751
NcoI	CCATGG	1 cut(s)	1208
NdeII	GATC	4 cut(s)	106, 865, 1369, 1605
NlaIII	CATG	9 cut(s)	332, 356, 482, 1205, 1212, 1256, 1510, 1591, 1714
NlaIV	GGNNCC	1 cut(s)	1165
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	297
PagI	TCATGA	1 cut(s)	1506
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	3 cut(s)	655, 714, 1488
PfeI	GAWTC	6 cut(s)	14, 475, 651, 715, 854, 979
PfoI	TCCNGGA	1 cut(s)	1601
PkrI	GCNGC	2 cut(s)	265, 1264
PleI	GAGTC	5 cut(s)	235, 502, 677, 800, 1478
PpsI	GAGTC	5 cut(s)	235, 502, 677, 800, 1478
PsiI	TTATAA	1 cut(s)	1065
Psp6I	CCWGG	3 cut(s)	34, 1601, 1837
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	3 cut(s)	34, 1601, 1837
PspN4I	GGNNCC	1 cut(s)	1165
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	1605
PvuII	CAGCTG	2 cut(s)	1265, 1384
RsaI	GTAC	4 cut(s)	118, 251, 576, 888
RsaNI	GTAC	4 cut(s)	117, 250, 575, 887
RseI	CAYNNNNRTG	2 cut(s)	660, 747
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	7 cut(s)	416, 675, 746, 959, 1170, 1652, 1761
SatI	GCNGC	2 cut(s)	264, 1263
Sau3AI	GATC	4 cut(s)	106, 865, 1369, 1605
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	5 cut(s)	236, 503, 678, 800, 1479
ScrFI	CCNGG	3 cut(s)	36, 1603, 1839
SduI	GDGCHC	3 cut(s)	591, 1168, 1732
SfaNI	GCATC	7 cut(s)	50, 315, 337, 711, 850, 1176, 1678
SfcI	CTRYAG	2 cut(s)	145, 1141
SfuI	TTCGAA	1 cut(s)	297
SmiI	ATTTAAAT	1 cut(s)	747
SmiMI	CAYNNNNRTG	2 cut(s)	660, 747
SmlI	CTYRAG	3 cut(s)	200, 674, 725
SmoI	CTYRAG	3 cut(s)	200, 674, 725
SsiI	CCGC	3 cut(s)	263, 535, 1334
SspMI	CTAG	2 cut(s)	1175, 1319
StyD4I	CCNGG	3 cut(s)	34, 1601, 1837
StyI	CCWWGG	1 cut(s)	1208
SwaI	ATTTAAAT	1 cut(s)	747
TaaI	ACNGT	6 cut(s)	158, 522, 1035, 1142, 1571, 1766
TaiI	ACGT	5 cut(s)	436, 561, 892, 1595, 1635
TaqI	TCGA	5 cut(s)	188, 243, 297, 826, 1372
TatI	WGTACW	2 cut(s)	116, 574
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	6 cut(s)	14, 475, 651, 715, 854, 979
Tru1I	TTAA	7 cut(s)	416, 675, 746, 959, 1170, 1652, 1761
Tru9I	TTAA	7 cut(s)	416, 675, 746, 959, 1170, 1652, 1761
TscAI	CASTG	3 cut(s)	876, 1145, 1576
TseI	GCWGC	1 cut(s)	1262
TspRI	CASTG	3 cut(s)	876, 1145, 1576
Vha464I	CTTAAG	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	1178
XapI	RAATTY	3 cut(s)	239, 935, 1356
XceI	RCATGY	1 cut(s)	356
XmnI	GAANNNNTTC	3 cut(s)	655, 714, 1488
XspI	CTAG	2 cut(s)	1175, 1319
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.