prolyl 4-hydroxylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43080 |
| fragaria_vesca | FvH4_4g11880 FvH4_4g11880 FvH4_4g11880 |
| malus_domestica | MD04G1030700.v1.1 |
| prunus_persica | Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1 |
| pyrus_communis | pycom04g02600 |
| rosa_chinensis | RchiOBHm_Chr4g0409351 |
| rosa_laevigata | RLG00000008567 |
| rosa_multiflora | Rmu_sc0001616.1_g000050 |
| rosa_roxburghii | Rroxscaffold_5G00353870 |
| rosa_rugosa | Rorug04G0093100 |
| rosa_samantha | Rh4AG155700 Rh4BG154200 Rh4DG148700 |
| rosa_wichuraiana | Rw4G012740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 551 |
| AciI | CCGC | 1 cut(s) | 9 |
| AclWI | GGATC | 3 cut(s) | 121, 386, 548 |
| AcuI | CTGAAG | 2 cut(s) | 152, 323 |
| AfaI | GTAC | 3 cut(s) | 393, 397, 486 |
| AgsI | TTSAA | 3 cut(s) | 125, 458, 512 |
| AleI | CACNNNNGTG | 1 cut(s) | 353 |
| AluBI | AGCT | 3 cut(s) | 255, 320, 402 |
| AluI | AGCT | 3 cut(s) | 255, 320, 402 |
| AlwI | GGATC | 3 cut(s) | 121, 386, 548 |
| ApeKI | GCWGC | 2 cut(s) | 5, 522 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 434, 507 |
| AspS9I | GGNCC | 1 cut(s) | 195 |
| AsuC2I | CCSGG | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 1 cut(s) | 252 |
| AvaII | GGWCC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 534 |
| BccI | CCATC | 1 cut(s) | 152 |
| BciVI | GTATCC | 1 cut(s) | 355 |
| BcnI | CCSGG | 1 cut(s) | 177 |
| BfmI | CTRYAG | 1 cut(s) | 351 |
| BfuI | GTATCC | 1 cut(s) | 355 |
| BisI | GCNGC | 3 cut(s) | 6, 9, 523 |
| BlsI | GCNGC | 3 cut(s) | 7, 10, 524 |
| Bme1390I | CCNGG | 1 cut(s) | 177 |
| Bme18I | GGWCC | 1 cut(s) | 195 |
| BmgT120I | GGNCC | 1 cut(s) | 195 |
| BmrFI | CCNGG | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 4 cut(s) | 310, 408, 436, 465 |
| BpuMI | CCSGG | 1 cut(s) | 177 |
| BsaAI | YACGTR | 1 cut(s) | 395 |
| BsaBI | GATNNNNATC | 1 cut(s) | 162 |
| Bse8I | GATNNNNATC | 1 cut(s) | 162 |
| BseJI | GATNNNNATC | 1 cut(s) | 162 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 2 cut(s) | 148, 321 |
| BseXI | GCAGC | 1 cut(s) | 534 |
| BsiSI | CCGG | 1 cut(s) | 177 |
| BsmI | GAATGC | 1 cut(s) | 308 |
| Bsp143I | GATC | 3 cut(s) | 113, 378, 540 |
| BspACI | CCGC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspHI | TCATGA | 1 cut(s) | 561 |
| BspPI | GGATC | 3 cut(s) | 121, 386, 548 |
| BssMI | GATC | 3 cut(s) | 113, 378, 540 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 352 |
| Bst6I | CTCTTC | 1 cut(s) | 96 |
| BstBAI | YACGTR | 1 cut(s) | 395 |
| BstDEI | CTNAG | 2 cut(s) | 117, 314 |
| BstEII | GGTNACC | 1 cut(s) | 258 |
| BstKTI | GATC | 3 cut(s) | 116, 381, 543 |
| BstMBI | GATC | 3 cut(s) | 113, 378, 540 |
| BstPI | GGTNACC | 1 cut(s) | 258 |
| BstSCI | CCNGG | 1 cut(s) | 175 |
| BstSFI | CTRYAG | 1 cut(s) | 351 |
| BstSNI | TACGTA | 1 cut(s) | 395 |
| BstV1I | GCAGC | 1 cut(s) | 534 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BsuI | GTATCC | 1 cut(s) | 355 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 348 |
| CciI | TCATGA | 1 cut(s) | 561 |
| Cfr13I | GGNCC | 1 cut(s) | 195 |
| Csp6I | GTAC | 3 cut(s) | 392, 396, 485 |
| CviAII | CATG | 2 cut(s) | 295, 562 |
| CviJI | RGCY | 5 cut(s) | 5, 162, 255, 320, 402 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 162, 255, 320, 402 |
| CviQI | GTAC | 3 cut(s) | 392, 396, 485 |
| DdeI | CTNAG | 2 cut(s) | 117, 314 |
| DpnI | GATC | 3 cut(s) | 115, 380, 542 |
| DpnII | GATC | 3 cut(s) | 113, 378, 540 |
| Eam1104I | CTCTTC | 1 cut(s) | 96 |
| EarI | CTCTTC | 1 cut(s) | 96 |
| Eco105I | TACGTA | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 2 cut(s) | 152, 323 |
| Eco91I | GGTNACC | 1 cut(s) | 258 |
| EcoO65I | GGTNACC | 1 cut(s) | 258 |
| FaeI | CATG | 2 cut(s) | 298, 565 |
| FatI | CATG | 2 cut(s) | 294, 561 |
| FauNDI | CATATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 9, 523 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 9, 523 |
| GluI | GCNGC | 3 cut(s) | 6, 9, 523 |
| HapII | CCGG | 1 cut(s) | 177 |
| Hin1II | CATG | 2 cut(s) | 298, 565 |
| HinfI | GANTC | 4 cut(s) | 30, 104, 418, 508 |
| HpaII | CCGG | 1 cut(s) | 177 |
| HphI | GGTGA | 1 cut(s) | 252 |
| Hpy166II | GTNNAC | 1 cut(s) | 358 |
| Hpy188I | TCNGA | 3 cut(s) | 53, 118, 576 |
| Hpy188III | TCNNGA | 5 cut(s) | 289, 382, 415, 425, 562 |
| Hpy8I | GTNNAC | 1 cut(s) | 358 |
| HpyAV | CCTTC | 2 cut(s) | 138, 347 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 352 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 394, 463 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 314 |
| HpySE526I | ACGT | 3 cut(s) | 38, 394, 463 |
| Hsp92II | CATG | 2 cut(s) | 298, 565 |
| Kzo9I | GATC | 3 cut(s) | 113, 378, 540 |
| LpnPI | CCDG | 9 cut(s) | 190, 241, 255, 326, 354, 390, 412, 434, 513 |
| Lsp1109I | GCAGC | 1 cut(s) | 534 |
| MaeII | ACGT | 3 cut(s) | 38, 394, 463 |
| MaeIII | GTNAC | 2 cut(s) | 43, 258 |
| MalI | GATC | 3 cut(s) | 115, 380, 542 |
| MboI | GATC | 3 cut(s) | 113, 378, 540 |
| MboII | GAAGA | 3 cut(s) | 113, 158, 442 |
| MfeI | CAATTG | 2 cut(s) | 77, 453 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MluCI | AATT | 4 cut(s) | 18, 77, 270, 453 |
| MlyI | GAGTC | 3 cut(s) | 24, 113, 427 |
| MmeI | TCCRAC | 1 cut(s) | 31 |
| MnlI | CCTC | 9 cut(s) | 126, 173, 198, 273, 292, 337, 342, 432, 566 |
| MroXI | GAANNNNTTC | 2 cut(s) | 434, 507 |
| MseI | TTAA | 2 cut(s) | 363, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 353, 530 |
| MspI | CCGG | 1 cut(s) | 177 |
| MspR9I | CCNGG | 1 cut(s) | 177 |
| MunI | CAATTG | 2 cut(s) | 77, 453 |
| Mva1269I | GAATGC | 1 cut(s) | 308 |
| NciI | CCSGG | 1 cut(s) | 177 |
| NdeI | CATATG | 1 cut(s) | 109 |
| NdeII | GATC | 3 cut(s) | 113, 378, 540 |
| NlaIII | CATG | 2 cut(s) | 298, 565 |
| NmuCI | GTSAC | 2 cut(s) | 43, 258 |
| OliI | CACNNNNGTG | 1 cut(s) | 353 |
| PagI | TCATGA | 1 cut(s) | 561 |
| PctI | GAATGC | 1 cut(s) | 308 |
| PdmI | GAANNNNTTC | 2 cut(s) | 434, 507 |
| PfeI | GAWTC | 1 cut(s) | 508 |
| PfoI | TCCNGGA | 1 cut(s) | 175 |
| PkrI | GCNGC | 3 cut(s) | 7, 10, 524 |
| PleI | GAGTC | 3 cut(s) | 24, 112, 426 |
| PpsI | GAGTC | 3 cut(s) | 24, 112, 426 |
| Ppu21I | YACGTR | 1 cut(s) | 395 |
| PsiI | TTATAA | 1 cut(s) | 551 |
| PspEI | GGTNACC | 1 cut(s) | 258 |
| PspPI | GGNCC | 1 cut(s) | 195 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| RsaI | GTAC | 3 cut(s) | 393, 397, 486 |
| RsaNI | GTAC | 3 cut(s) | 392, 396, 485 |
| RseI | CAYNNNNRTG | 2 cut(s) | 353, 530 |
| SaqAI | TTAA | 2 cut(s) | 363, 584 |
| SatI | GCNGC | 3 cut(s) | 6, 9, 523 |
| Sau3AI | GATC | 3 cut(s) | 113, 378, 540 |
| Sau96I | GGNCC | 1 cut(s) | 195 |
| SchI | GAGTC | 3 cut(s) | 24, 113, 427 |
| ScrFI | CCNGG | 1 cut(s) | 177 |
| SfcI | CTRYAG | 1 cut(s) | 351 |
| SinI | GGWCC | 1 cut(s) | 195 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 353, 530 |
| SmlI | CTYRAG | 4 cut(s) | 289, 415, 423, 480 |
| SmoI | CTYRAG | 4 cut(s) | 289, 415, 423, 480 |
| SnaBI | TACGTA | 1 cut(s) | 395 |
| Sse9I | AATT | 4 cut(s) | 18, 77, 270, 453 |
| SsiI | CCGC | 1 cut(s) | 9 |
| StyD4I | CCNGG | 1 cut(s) | 175 |
| TaaI | ACNGT | 2 cut(s) | 49, 352 |
| TaiI | ACGT | 3 cut(s) | 41, 397, 466 |
| TaqI | TCGA | 2 cut(s) | 131, 265 |
| TasI | AATT | 4 cut(s) | 18, 77, 270, 453 |
| TauI | GCSGC | 1 cut(s) | 11 |
| TfiI | GAWTC | 1 cut(s) | 508 |
| Tru1I | TTAA | 2 cut(s) | 363, 584 |
| Tru9I | TTAA | 2 cut(s) | 363, 584 |
| TscAI | CASTG | 2 cut(s) | 52, 355 |
| TseFI | GTSAC | 2 cut(s) | 43, 258 |
| TseI | GCWGC | 2 cut(s) | 5, 522 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 258 |
| TspDTI | ATGAA | 3 cut(s) | 29, 269, 548 |
| TspRI | CASTG | 2 cut(s) | 52, 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 195 |
| XmnI | GAANNNNTTC | 2 cut(s) | 434, 507 |