Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0014358

Physical Location & Seq

Genomic Coordinates Reverse (-)

243176 .. 252366

Gene Structure 9191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggctgctgcgatgaagattgtgttcggactccttacgtttgtcactgtcggaatgattataggatctgagtttccagcttcaaggagactgggcagaagtctaaatgatggctatcttaaattccccagaggtgttcctcattggaccaatgacaaagaagcagaaattttacgccttggatatgtcaagccagaagtgataagctggtcacctcgaataattgtgcttcataacttcttgagcacggaggaatgcgactatcttagagctattgcctctcctcgccttgaagtatccactgtagtggacatcaaaacaggaaaggggatcaagagtaaggttcgtaccagctctggtatgttcttgagtcctcaagagaaaaagttcccaatgatacaggcaattgaaaaacgtatttctgtctattctcaagtaccaatagaaaatggggaactgattcaagttttgaggtatgaaaaggaccagtattataaacctcatcatgactacttctctgacacttttaacttgaaacgtggtggtcagcgagtagcaacaattctgatgtatctgagtgacaacgttgagggtggagaaacttattttcctatggctggctcaggtgaatgtagctgtggtggaaaagttgtcaagggtatgtctgtcaagccaactaaaggagatgctgtacttttctggagcatgggtctggatggccaatcagatccaaatagcatgcatgcagggtgtgaggtgctagctggggaaaagtggtcagccacaaaatggatgaggcaaagatctacctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

271

Amino Acids

30.26

Weight (kDa)

9.14

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43080
fragaria_vesca	FvH4_4g11880 FvH4_4g11880 FvH4_4g11880
malus_domestica	MD04G1030700.v1.1
prunus_persica	Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1
pyrus_communis	pycom04g02600
rosa_chinensis	RchiOBHm_Chr4g0409351
rosa_laevigata	RLG00000008567
rosa_multiflora	Rmu_sc0001616.1_g000050
rosa_roxburghii	Rroxscaffold_5G00353870
rosa_rugosa	Rorug04G0093100
rosa_samantha	Rh4AG155700 Rh4BG154200 Rh4DG148700
rosa_wichuraiana	Rw4G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	789
AclI	AACGTT	1 cut(s)	585
AclWI	GGATC	3 cut(s)	73, 338, 722
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	2 cut(s)	122, 168
AfaI	GTAC	3 cut(s)	349, 438, 693
AfiI	CCNNNNNNNGG	3 cut(s)	617, 680, 789
AgsI	TTSAA	5 cut(s)	84, 293, 410, 464, 535
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	6 cut(s)	80, 207, 272, 354, 636, 764
AluI	AGCT	6 cut(s)	80, 207, 272, 354, 636, 764
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	73, 338, 722
AoxI	GGCC	1 cut(s)	718
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	2 cut(s)	122, 168
Asp700I	GAANNNNTTC	2 cut(s)	386, 459
AspS9I	GGNCC	2 cut(s)	147, 484
AsuHPI	GGTGA	2 cut(s)	204, 638
AsuNHI	GCTAGC	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	147, 484
BalI	TGGCCA	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	248
BccI	CCATC	2 cut(s)	104, 710
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	2 cut(s)	147, 484
BmgT120I	GGNCC	2 cut(s)	147, 484
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	676
BmtI	GCTAGC	1 cut(s)	764
BmuI	ACTGGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	622
BpuEI	CTTGAG	4 cut(s)	262, 360, 388, 417
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	4 cut(s)	675, 694, 705, 724
Bsc4I	CCNNNNNNNGG	3 cut(s)	617, 680, 789
Bse1I	ACTGG	2 cut(s)	96, 487
Bse8I	GATNNNNATC	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	721, 798
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	617, 680, 789
BseMII	CTCAG	3 cut(s)	60, 566, 636
BseNI	ACTGG	2 cut(s)	96, 487
BseRI	GAGGAG	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	617, 680, 789
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	65, 330, 727, 803
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	3 cut(s)	61, 567, 635
BspHI	TCATGA	1 cut(s)	505
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	3 cut(s)	73, 338, 722
BsrI	ACTGG	2 cut(s)	96, 487
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	4 cut(s)	65, 330, 727, 803
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	49, 304
BstC8I	GCNNGC	4 cut(s)	619, 740, 744, 762
BstDEI	CTNAG	4 cut(s)	69, 266, 575, 622
BstEII	GGTNACC	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	721, 798
BstKTI	GATC	4 cut(s)	68, 333, 730, 806
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	4 cut(s)	65, 330, 727, 803
BstNSI	RCATGY	2 cut(s)	742, 746
BstPI	GGTNACC	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	303
BstX2I	RGATCY	3 cut(s)	65, 727, 803
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	3 cut(s)	65, 727, 803
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	720
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	721, 798
BtsIMutI	CAGTG	2 cut(s)	45, 300
Cac8I	GCNNGC	4 cut(s)	619, 740, 744, 762
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	147, 484
Csp6I	GTAC	3 cut(s)	348, 437, 692
CviAII	CATG	4 cut(s)	506, 706, 739, 743
CviQI	GTAC	3 cut(s)	348, 437, 692
DdeI	CTNAG	4 cut(s)	69, 266, 575, 622
DpnI	GATC	4 cut(s)	67, 332, 729, 805
DpnII	GATC	4 cut(s)	65, 330, 727, 803
EaeI	YGGCCR	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	147, 484
Eco91I	GGTNACC	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	509, 709, 742, 746
FatI	CATG	4 cut(s)	505, 705, 738, 742
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	728, 805
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	1 cut(s)	720
Hin1II	CATG	4 cut(s)	509, 709, 742, 746
HinfI	GANTC	3 cut(s)	30, 370, 460
HphI	GGTGA	2 cut(s)	204, 638
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	7 cut(s)	29, 53, 70, 520, 567, 576, 727
Hpy188III	TCNNGA	8 cut(s)	241, 334, 367, 377, 506, 700, 713, 813
Hpy8I	GTNNAC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	49, 304
HpyCH4IV	ACGT	4 cut(s)	38, 415, 538, 585
HpyCH4V	TGCA	2 cut(s)	742, 746
HpyF3I	CTNAG	4 cut(s)	69, 266, 575, 622
HpySE526I	ACGT	4 cut(s)	38, 415, 538, 585
Hsp92II	CATG	4 cut(s)	509, 709, 742, 746
Kzo9I	GATC	4 cut(s)	65, 330, 727, 803
LmnI	GCTCC	1 cut(s)	702
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	4 cut(s)	38, 415, 538, 585
MaeIII	GTNAC	3 cut(s)	43, 210, 578
MalI	GATC	4 cut(s)	67, 332, 729, 805
MboI	GATC	4 cut(s)	65, 330, 727, 803
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	3 cut(s)	65, 727, 803
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	5 cut(s)	122, 168, 222, 405, 561
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	24, 379
MmeI	TCCRAC	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	720
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	386, 459
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	2 cut(s)	120, 528
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	720
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	260
NdeII	GATC	4 cut(s)	65, 330, 727, 803
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	4 cut(s)	509, 709, 742, 746
NmuCI	GTSAC	3 cut(s)	43, 210, 578
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	2 cut(s)	742, 746
OliI	CACNNNNGTG	1 cut(s)	305
PaeI	GCATGC	2 cut(s)	742, 746
PagI	TCATGA	1 cut(s)	505
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	386, 459
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	789
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	2 cut(s)	24, 378
PpsI	GAGTC	2 cut(s)	24, 378
PsiI	TTATAA	1 cut(s)	495
Psp1406I	AACGTT	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	764
PspPI	GGNCC	2 cut(s)	147, 484
PsuI	RGATCY	3 cut(s)	65, 727, 803
RsaI	GTAC	3 cut(s)	349, 438, 693
RsaNI	GTAC	3 cut(s)	348, 437, 692
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	120, 528
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	4 cut(s)	65, 330, 727, 803
Sau96I	GGNCC	2 cut(s)	147, 484
SchI	GAGTC	2 cut(s)	24, 379
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	147, 484
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	4 cut(s)	241, 367, 375, 432
SmoI	CTYRAG	4 cut(s)	241, 367, 375, 432
SphI	GCATGC	2 cut(s)	742, 746
Sse9I	AATT	5 cut(s)	122, 168, 222, 405, 561
SspMI	CTAG	1 cut(s)	761
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	49, 304
TaiI	ACGT	4 cut(s)	41, 418, 541, 588
TaqI	TCGA	1 cut(s)	217
TasI	AATT	5 cut(s)	122, 168, 222, 405, 561
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	120, 528
Tru9I	TTAA	2 cut(s)	120, 528
TscAI	CASTG	2 cut(s)	52, 307
TseFI	GTSAC	3 cut(s)	43, 210, 578
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	3 cut(s)	43, 210, 578
TspDTI	ATGAA	3 cut(s)	29, 221, 492
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	52, 307
Van91I	CCANNNNNTGG	1 cut(s)	789
VpaK11BI	GGWCC	2 cut(s)	147, 484
XapI	RAATTY	2 cut(s)	122, 168
XceI	RCATGY	2 cut(s)	742, 746
XmnI	GAANNNNTTC	2 cut(s)	386, 459
XspI	CTAG	1 cut(s)	761
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.