Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014358

Physical Location & Seq

Genomic Coordinates Forward (+)

14352712 .. 14354169

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATTGGAAATGCCAAATTGGTATTCGCGGTGGACTACGGCCAGGTTTCTCATCGTCGACGCCGATAACGTCCGCAAGGAATGCTGCCAGGACCGGTAACGATGCTATTGCTTACCTCAACCTTGTGGAGCAGGGTGAGAATGCTGGAAAGATGGATGTATACAAATCTGGGCACATGGAGGCTACCAAGTGGAAGAAGTGTCATGCAGGGATTTCTTTGTTTGCCGTGAATGCAGGGGAGTGCTCAGATGAAATGCAGGTAATTAGGAGAGACTGTTTGGACCAAGTTACTGCCATTATTCTGAAGTCATTCAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCGGGTTCAGGCAATACAAATCCTCTATCATTGGAGGTTTCACTATGCACTAGACGCCACAGTTGACCATCACCGGAATCCAGGAGTTAAGATATCACTTTTGATTGGTTATGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

164

Amino Acids

18.41

Weight (kDa)

8.85

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43080
fragaria_vesca	FvH4_4g11880 FvH4_4g11880 FvH4_4g11880
malus_domestica	MD04G1030700.v1.1
prunus_persica	Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1
pyrus_communis	pycom04g02600
rosa_chinensis	RchiOBHm_Chr4g0409351
rosa_laevigata	RLG00000008567
rosa_multiflora	Rmu_sc0001616.1_g000050
rosa_roxburghii	Rroxscaffold_5G00353870
rosa_rugosa	Rorug04G0093100
rosa_samantha	Rh4AG155700 Rh4BG154200 Rh4DG148700
rosa_wichuraiana	Rw4G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccI	GTMKAC	2 cut(s)	59, 162
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	30, 75
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	62, 429
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	43, 89, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	86, 344
AsiGI	ACCGGT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	93, 283
AsuHPI	GGTGA	2 cut(s)	149, 437
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	2 cut(s)	93, 283
BaeGI	GKGCMC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	73, 356
BccI	CCATC	2 cut(s)	148, 450
BceAI	ACGGC	2 cut(s)	56, 212
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	3 cut(s)	45, 91, 456
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	87, 345
BlsI	GCNGC	2 cut(s)	88, 346
Bme1390I	CCNGG	3 cut(s)	45, 91, 456
Bme18I	GGWCC	2 cut(s)	93, 283
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	93, 283
BmrFI	CCNGG	3 cut(s)	45, 91, 456
BmsI	GCATC	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	2 cut(s)	62, 429
BsaWI	WCCGGW	2 cut(s)	95, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse118I	RCCGGY	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	45, 91, 456
BseGI	GGATG	2 cut(s)	163, 325
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	73, 356
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	96, 448
BsmAI	GTCTC	1 cut(s)	267
BsmI	GAATGC	3 cut(s)	88, 148, 238
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	177, 248
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	2 cut(s)	30, 75
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	1 cut(s)	319
BssNAI	GTATAC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	62, 429
Bst1107I	GTATAC	1 cut(s)	163
Bst2UI	CCWGG	3 cut(s)	45, 91, 456
Bst4CI	ACNGT	2 cut(s)	278, 436
BstACI	GRCGYC	2 cut(s)	62, 429
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	163, 325
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 233, 428
BstNI	CCWGG	3 cut(s)	45, 91, 456
BstSCI	CCNGG	3 cut(s)	43, 89, 454
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	73, 356
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	163, 325
BveI	ACCTGC	1 cut(s)	250
CciI	TCATGA	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	93, 283
CseI	GACGC	2 cut(s)	70, 437
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	3 cut(s)	178, 206, 492
CviJI	RGCY	4 cut(s)	43, 185, 347, 367
CviKI_1	RGCY	4 cut(s)	43, 185, 347, 367
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	93, 283
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	330
EcoRII	CCWGG	3 cut(s)	43, 89, 454
EcoRV	GATATC	1 cut(s)	468
FaeI	CATG	3 cut(s)	181, 209, 495
FaiI	YATR	7 cut(s)	163, 179, 207, 359, 420, 486, 493
FatI	CATG	3 cut(s)	177, 205, 491
FblI	GTMKAC	2 cut(s)	59, 162
Fnu4HI	GCNGC	2 cut(s)	87, 345
FokI	GGATG	2 cut(s)	170, 312
Fsp4HI	GCNGC	2 cut(s)	87, 345
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	87, 345
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	96, 448
HgaI	GACGC	2 cut(s)	70, 437
Hin1I	GRCGYC	2 cut(s)	62, 429
Hin1II	CATG	3 cut(s)	181, 209, 495
HincII	GTYRAC	2 cut(s)	60, 439
HindII	GTYRAC	2 cut(s)	60, 439
HinfI	GANTC	2 cut(s)	451, 488
HpaII	CCGG	2 cut(s)	96, 448
HphI	GGTGA	2 cut(s)	149, 437
Hpy166II	GTNNAC	4 cut(s)	35, 60, 163, 439
Hpy188I	TCNGA	2 cut(s)	250, 306
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	4 cut(s)	35, 60, 163, 439
Hpy99I	CGWCG	2 cut(s)	61, 64
HpyCH4III	ACNGT	2 cut(s)	278, 436
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	209, 236, 259, 361, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 233, 428
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	62, 429
Hsp92II	CATG	3 cut(s)	181, 209, 495
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	73, 356
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	98, 289
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	177, 248
MluCI	AATT	3 cut(s)	18, 264, 352
MnlI	CCTC	6 cut(s)	128, 175, 333, 339, 402, 407
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	2 cut(s)	351, 462
MspI	CCGG	2 cut(s)	96, 448
MspR9I	CCNGG	3 cut(s)	45, 91, 456
Mva1269I	GAATGC	3 cut(s)	88, 148, 238
MvaI	CCWGG	3 cut(s)	45, 91, 456
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	83, 233, 428
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	181, 209, 495
PaeR7I	CTCGAG	1 cut(s)	330
PagI	TCATGA	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 68
PctI	GAATGC	3 cut(s)	88, 148, 238
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	451, 488
PfoI	TCCNGGA	1 cut(s)	454
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	88, 346
Psp6I	CCWGG	3 cut(s)	43, 89, 454
PspGI	CCWGG	3 cut(s)	43, 89, 454
PspPI	GGNCC	2 cut(s)	93, 283
PspXI	VCTCGAGB	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	351, 462
SatI	GCNGC	2 cut(s)	87, 345
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	93, 283
ScrFI	CCNGG	3 cut(s)	45, 91, 456
SduI	GDGCHC	2 cut(s)	177, 248
SetI	ASST	7 cut(s)	49, 74, 120, 126, 264, 349, 413
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	330
SgrDI	CGTCGACG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	93, 283
SlaI	CTCGAG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	3 cut(s)	18, 264, 352
SsiI	CCGC	2 cut(s)	30, 75
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	43, 89, 454
TaaI	ACNGT	2 cut(s)	278, 436
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	59, 331
TasI	AATT	3 cut(s)	18, 264, 352
TfiI	GAWTC	2 cut(s)	451, 488
Tru1I	TTAA	2 cut(s)	351, 462
Tru9I	TTAA	2 cut(s)	351, 462
TseI	GCWGC	2 cut(s)	86, 344
TspDTI	ATGAA	2 cut(s)	267, 480
VpaK11BI	GGWCC	2 cut(s)	93, 283
XhoI	CTCGAG	1 cut(s)	330
XmiI	GTMKAC	2 cut(s)	59, 162
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.