prolyl 4-hydroxylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43080 |
| fragaria_vesca | FvH4_4g11880 FvH4_4g11880 FvH4_4g11880 |
| malus_domestica | MD04G1030700.v1.1 |
| prunus_persica | Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1 |
| pyrus_communis | pycom04g02600 |
| rosa_chinensis | RchiOBHm_Chr4g0409351 |
| rosa_laevigata | RLG00000008567 |
| rosa_multiflora | Rmu_sc0001616.1_g000050 |
| rosa_roxburghii | Rroxscaffold_5G00353870 |
| rosa_rugosa | Rorug04G0093100 |
| rosa_samantha | Rh4AG155700 Rh4BG154200 Rh4DG148700 |
| rosa_wichuraiana | Rw4G012740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 585 |
| AciI | CCGC | 1 cut(s) | 585 |
| AclI | AACGTT | 1 cut(s) | 38 |
| AclWI | GGATC | 1 cut(s) | 767 |
| AcoI | YGGCCR | 1 cut(s) | 807 |
| AcsI | RAATTY | 1 cut(s) | 213 |
| AfaI | GTAC | 7 cut(s) | 273, 394, 434, 483, 521, 738, 786 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 662, 725 |
| AgsI | TTSAA | 6 cut(s) | 77, 338, 455, 509, 574, 580 |
| AleI | CACNNNNGTG | 1 cut(s) | 350 |
| AluBI | AGCT | 3 cut(s) | 252, 399, 681 |
| AluI | AGCT | 3 cut(s) | 252, 399, 681 |
| Alw26I | GTCTC | 2 cut(s) | 346, 835 |
| AlwI | GGATC | 1 cut(s) | 767 |
| Ama87I | CYCGRG | 1 cut(s) | 167 |
| AoxI | GGCC | 2 cut(s) | 754, 807 |
| ApeKI | GCWGC | 2 cut(s) | 5, 8 |
| ApoI | RAATTY | 1 cut(s) | 213 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 504 |
| AspS9I | GGNCC | 2 cut(s) | 255, 754 |
| AsuC2I | CCSGG | 2 cut(s) | 177, 811 |
| AsuHPI | GGTGA | 1 cut(s) | 683 |
| AvaI | CYCGRG | 1 cut(s) | 167 |
| AvaII | GGWCC | 1 cut(s) | 255 |
| BccI | CCATC | 3 cut(s) | 133, 152, 755 |
| BceAI | ACGGC | 1 cut(s) | 236 |
| BcnI | CCSGG | 2 cut(s) | 177, 811 |
| BcoDI | GTCTC | 2 cut(s) | 346, 835 |
| BfaI | CTAG | 1 cut(s) | 132 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BisI | GCNGC | 2 cut(s) | 6, 9 |
| BlsI | GCNGC | 2 cut(s) | 7, 10 |
| BmcAI | AGTACT | 1 cut(s) | 738 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 811 |
| Bme18I | GGWCC | 1 cut(s) | 255 |
| BmeT110I | CYCGRG | 1 cut(s) | 167 |
| BmgT120I | GGNCC | 2 cut(s) | 255, 754 |
| BmiI | GGNNCC | 2 cut(s) | 115, 257 |
| BmrFI | CCNGG | 2 cut(s) | 177, 811 |
| BmsI | GCATC | 1 cut(s) | 721 |
| BpuEI | CTTGAG | 2 cut(s) | 307, 433 |
| BpuMI | CCSGG | 2 cut(s) | 177, 811 |
| BsaBI | GATNNNNATC | 1 cut(s) | 162 |
| BsaJI | CCNNGG | 1 cut(s) | 810 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 720, 750 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 662, 725 |
| Bse1I | ACTGG | 2 cut(s) | 485, 719 |
| Bse8I | GATNNNNATC | 1 cut(s) | 162 |
| BseDI | CCNNGG | 1 cut(s) | 810 |
| BseGI | GGATG | 2 cut(s) | 800, 843 |
| BseJI | GATNNNNATC | 1 cut(s) | 162 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 662, 725 |
| BseNI | ACTGG | 2 cut(s) | 485, 719 |
| Bsh1236I | CGCG | 1 cut(s) | 585 |
| BshFI | GGCC | 2 cut(s) | 756, 809 |
| BsiHKCI | CYCGRG | 1 cut(s) | 167 |
| BsiSI | CCGG | 2 cut(s) | 177, 810 |
| BslFI | GGGAC | 1 cut(s) | 241 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 662, 725 |
| BsmAI | GTCTC | 2 cut(s) | 346, 835 |
| BsmFI | GGGAC | 1 cut(s) | 241 |
| BsnI | GGCC | 2 cut(s) | 756, 809 |
| BsoBI | CYCGRG | 1 cut(s) | 167 |
| Bsp143I | GATC | 1 cut(s) | 772 |
| BspACI | CCGC | 1 cut(s) | 585 |
| BspANI | GGCC | 2 cut(s) | 756, 809 |
| BspFNI | CGCG | 1 cut(s) | 585 |
| BspHI | TCATGA | 2 cut(s) | 418, 550 |
| BspLI | GGNNCC | 2 cut(s) | 115, 257 |
| BspPI | GGATC | 1 cut(s) | 767 |
| BsrI | ACTGG | 2 cut(s) | 485, 719 |
| BssECI | CCNNGG | 1 cut(s) | 810 |
| BssMI | GATC | 1 cut(s) | 772 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 349 |
| Bst6I | CTCTTC | 3 cut(s) | 96, 130, 417 |
| BstC8I | GCNNGC | 1 cut(s) | 807 |
| BstDEI | CTNAG | 2 cut(s) | 311, 620 |
| BstF5I | GGATG | 2 cut(s) | 800, 843 |
| BstFNI | CGCG | 1 cut(s) | 585 |
| BstKTI | GATC | 1 cut(s) | 775 |
| BstMAI | GTCTC | 2 cut(s) | 346, 835 |
| BstMBI | GATC | 1 cut(s) | 772 |
| BstSCI | CCNGG | 2 cut(s) | 175, 809 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstUI | CGCG | 1 cut(s) | 585 |
| BstX2I | RGATCY | 1 cut(s) | 772 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 352 |
| BstYI | RGATCY | 1 cut(s) | 772 |
| BsuRI | GGCC | 2 cut(s) | 756, 809 |
| BtgZI | GCGATG | 1 cut(s) | 26 |
| BtsCI | GGATG | 2 cut(s) | 800, 843 |
| BtsIMutI | CAGTG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 1 cut(s) | 807 |
| CciI | TCATGA | 2 cut(s) | 418, 550 |
| Cfr13I | GGNCC | 2 cut(s) | 255, 754 |
| Csp6I | GTAC | 7 cut(s) | 272, 393, 433, 482, 520, 737, 785 |
| CviAII | CATG | 5 cut(s) | 292, 419, 551, 751, 788 |
| CviQI | GTAC | 7 cut(s) | 272, 393, 433, 482, 520, 737, 785 |
| DdeI | CTNAG | 2 cut(s) | 311, 620 |
| DpnI | GATC | 1 cut(s) | 774 |
| DpnII | GATC | 1 cut(s) | 772 |
| EaeI | YGGCCR | 1 cut(s) | 807 |
| Eam1104I | CTCTTC | 3 cut(s) | 96, 130, 417 |
| EarI | CTCTTC | 3 cut(s) | 96, 130, 417 |
| Eco47I | GGWCC | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 167 |
| FaeI | CATG | 5 cut(s) | 295, 422, 554, 754, 791 |
| FaqI | GGGAC | 1 cut(s) | 241 |
| FatI | CATG | 5 cut(s) | 291, 418, 550, 750, 787 |
| FauNDI | CATATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 9 |
| FokI | GGATG | 2 cut(s) | 807, 850 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 9 |
| FspBI | CTAG | 1 cut(s) | 132 |
| GluI | GCNGC | 2 cut(s) | 6, 9 |
| HaeIII | GGCC | 2 cut(s) | 756, 809 |
| HapII | CCGG | 2 cut(s) | 177, 810 |
| Hin1II | CATG | 5 cut(s) | 295, 422, 554, 754, 791 |
| HinfI | GANTC | 3 cut(s) | 104, 415, 529 |
| HpaII | CCGG | 2 cut(s) | 177, 810 |
| HphI | GGTGA | 1 cut(s) | 683 |
| Hpy166II | GTNNAC | 1 cut(s) | 355 |
| Hpy188I | TCNGA | 6 cut(s) | 29, 53, 118, 565, 701, 772 |
| Hpy188III | TCNNGA | 6 cut(s) | 167, 286, 412, 419, 551, 858 |
| Hpy8I | GTNNAC | 1 cut(s) | 355 |
| Hpy99I | CGWCG | 1 cut(s) | 442 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 349 |
| HpyCH4IV | ACGT | 1 cut(s) | 38 |
| HpyCH4V | TGCA | 1 cut(s) | 734 |
| HpyF3I | CTNAG | 2 cut(s) | 311, 620 |
| HpySE526I | ACGT | 1 cut(s) | 38 |
| Hsp92II | CATG | 5 cut(s) | 295, 422, 554, 754, 791 |
| Kzo9I | GATC | 1 cut(s) | 772 |
| LmnI | GCTCC | 2 cut(s) | 119, 747 |
| LweI | GCATC | 1 cut(s) | 721 |
| MaeI | CTAG | 1 cut(s) | 132 |
| MaeII | ACGT | 1 cut(s) | 38 |
| MaeIII | GTNAC | 2 cut(s) | 43, 302 |
| MalI | GATC | 1 cut(s) | 774 |
| MboI | GATC | 1 cut(s) | 772 |
| MboII | GAAGA | 5 cut(s) | 28, 105, 113, 147, 434 |
| MfeI | CAATTG | 2 cut(s) | 77, 450 |
| MflI | RGATCY | 1 cut(s) | 772 |
| MluCI | AATT | 6 cut(s) | 77, 213, 246, 267, 450, 606 |
| MlyI | GAGTC | 2 cut(s) | 113, 424 |
| MmeI | TCCRAC | 2 cut(s) | 31, 259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 504 |
| MseI | TTAA | 2 cut(s) | 515, 723 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspI | CCGG | 2 cut(s) | 177, 810 |
| MspR9I | CCNGG | 2 cut(s) | 177, 811 |
| MunI | CAATTG | 2 cut(s) | 77, 450 |
| MvnI | CGCG | 1 cut(s) | 585 |
| NciI | CCSGG | 2 cut(s) | 177, 811 |
| NdeI | CATATG | 1 cut(s) | 109 |
| NdeII | GATC | 1 cut(s) | 772 |
| NlaIII | CATG | 5 cut(s) | 295, 422, 554, 754, 791 |
| NlaIV | GGNNCC | 2 cut(s) | 115, 257 |
| NmuCI | GTSAC | 2 cut(s) | 43, 302 |
| OliI | CACNNNNGTG | 1 cut(s) | 350 |
| PaeR7I | CTCGAG | 1 cut(s) | 167 |
| PagI | TCATGA | 2 cut(s) | 418, 550 |
| PdmI | GAANNNNTTC | 1 cut(s) | 504 |
| PfeI | GAWTC | 1 cut(s) | 529 |
| PkrI | GCNGC | 2 cut(s) | 7, 10 |
| PleI | GAGTC | 2 cut(s) | 112, 423 |
| PpsI | GAGTC | 2 cut(s) | 112, 423 |
| Psp1406I | AACGTT | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 2 cut(s) | 115, 257 |
| PspPI | GGNCC | 2 cut(s) | 255, 754 |
| PsuI | RGATCY | 1 cut(s) | 772 |
| RsaI | GTAC | 7 cut(s) | 273, 394, 434, 483, 521, 738, 786 |
| RsaNI | GTAC | 7 cut(s) | 272, 393, 433, 482, 520, 737, 785 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 2 cut(s) | 515, 723 |
| SatI | GCNGC | 2 cut(s) | 6, 9 |
| Sau3AI | GATC | 1 cut(s) | 772 |
| Sau96I | GGNCC | 2 cut(s) | 255, 754 |
| ScaI | AGTACT | 1 cut(s) | 738 |
| SchI | GAGTC | 2 cut(s) | 113, 424 |
| ScrFI | CCNGG | 2 cut(s) | 177, 811 |
| SfaNI | GCATC | 1 cut(s) | 721 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| Sfr274I | CTCGAG | 1 cut(s) | 167 |
| SinI | GGWCC | 1 cut(s) | 255 |
| SlaI | CTCGAG | 1 cut(s) | 167 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 3 cut(s) | 167, 286, 412 |
| SmoI | CTYRAG | 3 cut(s) | 167, 286, 412 |
| Sse9I | AATT | 6 cut(s) | 77, 213, 246, 267, 450, 606 |
| SsiI | CCGC | 1 cut(s) | 585 |
| SspMI | CTAG | 1 cut(s) | 132 |
| StyD4I | CCNGG | 2 cut(s) | 175, 809 |
| TaaI | ACNGT | 2 cut(s) | 49, 349 |
| TaiI | ACGT | 1 cut(s) | 41 |
| TaqI | TCGA | 2 cut(s) | 168, 262 |
| TasI | AATT | 6 cut(s) | 77, 213, 246, 267, 450, 606 |
| TatI | WGTACW | 2 cut(s) | 271, 736 |
| TfiI | GAWTC | 1 cut(s) | 529 |
| Tru1I | TTAA | 2 cut(s) | 515, 723 |
| Tru9I | TTAA | 2 cut(s) | 515, 723 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 2 cut(s) | 43, 302 |
| TseI | GCWGC | 2 cut(s) | 5, 8 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 302 |
| TspDTI | ATGAA | 3 cut(s) | 29, 266, 435 |
| TspRI | CASTG | 1 cut(s) | 352 |
| VpaK11BI | GGWCC | 1 cut(s) | 255 |
| XapI | RAATTY | 1 cut(s) | 213 |
| XhoI | CTCGAG | 1 cut(s) | 167 |
| XmnI | GAANNNNTTC | 1 cut(s) | 504 |
| XspI | CTAG | 1 cut(s) | 132 |
| ZrmI | AGTACT | 1 cut(s) | 738 |