Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014358

Physical Location & Seq

Genomic Coordinates Forward (+)

29778860 .. 29789020

Gene Structure 10161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTGCTGCGATGAAGATTGTGTTCGGACTCCTTACGTTTGTCACTGTCGGAATGATTATAGGTGCTTTGTTCCAGTTGGCATTTATACGAAGATTGGAGGAGTCGTATGGATCTGAGTTTCCAGCTTCAAGGAGACTGGGCAGAAGTCTAAATGATGGCTATCTTAAATTCCCCAGAGGTGTTCCTCATTGGACCAATGACAAAGAAGCAGAAATTTTACGCCTTGGATATGTCAAGCCAGAAGTGATAAGCTGGTCACCTCGAATAATTGTGCTTCATAACTTCTTGAGCACGGAGGAATGCGACTATCTTAGAGCTATTGCTTCTCCTCGCCTTGAAGTATCCACTGTAGTGGACATCAAAACAGGAAAGGGGATCAAGAGTAAGGTTCGTACCAGCTCTGGTATGTTCTTGAGTCCTCAAGAGAAAAAGTTCCCAATGATACAGGCAATTGAAAAACGTATTTCTGTCTATTCTCAAGTACCAATAGAAAATGGGGAACTGATTCAAGTTTTGAGGTATGAAAAGGACCAGTATTATAAACCTCATCATGACTACTTCTCTGACACTTTTAACTTGAAACGTGGTGGTCAGCGAGTAGCAACAATTCTGATGTATCTGAGTGACAACGTTGAGGGTGGAGAAACTTATTTTCCTATGGCTGGCTCAGGTGAATGTAGCTGTGGTGGAAAAGTTGTCAAGGGTATGTCTGTCAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATGCATGCAGGGTGTGAGGTGCTAGCTGGGGAAAAGTGGTCAGCCACAAAATGGATGAGAACCACAATTATTACTGAAGTACCAGTAATGCACATGGGGAAAGCCTCAAGTGTACTTGAAAATCTTATTGCTGACAGACCTAGCCACAGATATGGCACCTCATTTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

319

Amino Acids

35.7

Weight (kDa)

8.99

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	169 - 282	1.5e-10	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	170 - 282	6.4e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43080
fragaria_vesca	FvH4_4g11880 FvH4_4g11880 FvH4_4g11880
malus_domestica	MD04G1030700.v1.1
prunus_persica	Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1
pyrus_communis	pycom04g02600
rosa_chinensis	RchiOBHm_Chr4g0409351
rosa_laevigata	RLG00000008567
rosa_multiflora	Rmu_sc0001616.1_g000050
rosa_roxburghii	Rroxscaffold_5G00353870
rosa_rugosa	Rorug04G0093100
rosa_samantha	Rh4AG155700 Rh4BG154200 Rh4DG148700
rosa_wichuraiana	Rw4G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	941
AccB7I	CCANNNNNTGG	1 cut(s)	837
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	3 cut(s)	121, 386, 770
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	2 cut(s)	170, 216
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	5 cut(s)	397, 486, 741, 867, 900
AfiI	CCNNNNNNNGG	3 cut(s)	665, 728, 837
AgsI	TTSAA	6 cut(s)	132, 341, 458, 512, 583, 905
AleI	CACNNNNGTG	1 cut(s)	353
AluBI	AGCT	6 cut(s)	128, 255, 320, 402, 684, 812
AluI	AGCT	6 cut(s)	128, 255, 320, 402, 684, 812
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	121, 386, 770
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	2 cut(s)	170, 216
Asp700I	GAANNNNTTC	2 cut(s)	434, 507
AspS9I	GGNCC	2 cut(s)	195, 532
AsuHPI	GGTGA	2 cut(s)	252, 686
AsuNHI	GCTAGC	1 cut(s)	808
AvaII	GGWCC	2 cut(s)	195, 532
BaeI	ACNNNNGTAYC	2 cut(s)	849, 882
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	941
Bbv12I	GWGCWC	1 cut(s)	296
BccI	CCATC	2 cut(s)	152, 758
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	809, 927
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	2 cut(s)	195, 532
BmgT120I	GGNCC	2 cut(s)	195, 532
BmiI	GGNNCC	1 cut(s)	943
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	724
BmtI	GCTAGC	1 cut(s)	812
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	769
Bpu10I	CCTNAGC	1 cut(s)	670
BpuEI	CTTGAG	5 cut(s)	310, 408, 436, 465, 877
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 723, 742, 753, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	665, 728, 837
Bse1I	ACTGG	4 cut(s)	76, 144, 535, 869
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	769, 846
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	3 cut(s)	665, 728, 837
BseMII	CTCAG	3 cut(s)	108, 614, 684
BseNI	ACTGG	4 cut(s)	76, 144, 535, 869
BseRI	GAGGAG	2 cut(s)	116, 321
BseYI	CCCAGC	1 cut(s)	812
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	665, 728, 837
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	768
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	113, 378, 775
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	3 cut(s)	109, 615, 683
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	943
BspOI	GCTAGC	1 cut(s)	812
BspPI	GGATC	3 cut(s)	121, 386, 770
BspT107I	GGYRCC	1 cut(s)	941
BsrI	ACTGG	4 cut(s)	76, 144, 535, 869
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	113, 378, 775
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	49, 352
BstC8I	GCNNGC	4 cut(s)	667, 788, 792, 810
BstDEI	CTNAG	4 cut(s)	117, 314, 623, 670
BstEII	GGTNACC	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	769, 846
BstKTI	GATC	3 cut(s)	116, 381, 778
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	113, 378, 775
BstNSI	RCATGY	2 cut(s)	790, 794
BstPI	GGTNACC	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	113, 775
BstXI	CCANNNNNNTGG	2 cut(s)	355, 938
BstYI	RGATCY	2 cut(s)	113, 775
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	769, 846
BtsIMutI	CAGTG	2 cut(s)	45, 348
Cac8I	GCNNGC	4 cut(s)	667, 788, 792, 810
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	195, 532
Csp6I	GTAC	5 cut(s)	396, 485, 740, 866, 899
CviAII	CATG	5 cut(s)	554, 754, 787, 791, 880
CviQI	GTAC	5 cut(s)	396, 485, 740, 866, 899
DdeI	CTNAG	4 cut(s)	117, 314, 623, 670
DpnI	GATC	3 cut(s)	115, 380, 777
DpnII	GATC	3 cut(s)	113, 378, 775
EaeI	YGGCCR	1 cut(s)	766
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	195, 532
Eco57I	CTGAAG	1 cut(s)	882
Eco91I	GGTNACC	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	5 cut(s)	557, 757, 790, 794, 883
FatI	CATG	5 cut(s)	553, 753, 786, 790, 879
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	776, 853
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	809, 927
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	1 cut(s)	769
HaeIII	GGCC	1 cut(s)	768
Hin1II	CATG	5 cut(s)	557, 757, 790, 794, 883
HinfI	GANTC	4 cut(s)	30, 104, 418, 508
HphI	GGTGA	2 cut(s)	252, 686
Hpy166II	GTNNAC	2 cut(s)	358, 899
Hpy188I	TCNGA	7 cut(s)	29, 53, 118, 568, 615, 624, 775
Hpy188III	TCNNGA	7 cut(s)	289, 382, 415, 425, 554, 748, 761
Hpy8I	GTNNAC	2 cut(s)	358, 899
HpyCH4III	ACNGT	2 cut(s)	49, 352
HpyCH4IV	ACGT	4 cut(s)	38, 463, 586, 633
HpyCH4V	TGCA	3 cut(s)	790, 794, 877
HpyF3I	CTNAG	4 cut(s)	117, 314, 623, 670
HpySE526I	ACGT	4 cut(s)	38, 463, 586, 633
Hsp92II	CATG	5 cut(s)	557, 757, 790, 794, 883
Kzo9I	GATC	3 cut(s)	113, 378, 775
LmnI	GCTCC	1 cut(s)	750
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	2 cut(s)	809, 927
MaeII	ACGT	4 cut(s)	38, 463, 586, 633
MaeIII	GTNAC	3 cut(s)	43, 258, 626
MalI	GATC	3 cut(s)	115, 380, 777
MboI	GATC	3 cut(s)	113, 378, 775
MboII	GAAGA	2 cut(s)	28, 105
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	113, 775
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	6 cut(s)	170, 216, 270, 453, 609, 852
MluNI	TGGCCA	1 cut(s)	768
MlyI	GAGTC	3 cut(s)	24, 113, 427
MmeI	TCCRAC	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	768
Mph1103I	ATGCAT	1 cut(s)	792
MroXI	GAANNNNTTC	2 cut(s)	434, 507
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	2 cut(s)	168, 576
MslI	CAYNNNNRTG	2 cut(s)	353, 936
Msp20I	TGGCCA	1 cut(s)	768
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	113, 378, 775
NheI	GCTAGC	1 cut(s)	808
NlaIII	CATG	5 cut(s)	557, 757, 790, 794, 883
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	3 cut(s)	43, 258, 626
NsiI	ATGCAT	1 cut(s)	792
NspI	RCATGY	2 cut(s)	790, 794
OliI	CACNNNNGTG	1 cut(s)	353
PaeI	GCATGC	2 cut(s)	790, 794
PagI	TCATGA	1 cut(s)	553
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	2 cut(s)	434, 507
PfeI	GAWTC	1 cut(s)	508
PflMI	CCANNNNNTGG	1 cut(s)	837
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	3 cut(s)	24, 112, 426
PpsI	GAGTC	3 cut(s)	24, 112, 426
PsiI	TTATAA	1 cut(s)	543
Psp1406I	AACGTT	1 cut(s)	633
PspEI	GGTNACC	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	812
PspN4I	GGNNCC	1 cut(s)	943
PspPI	GGNCC	2 cut(s)	195, 532
PsuI	RGATCY	2 cut(s)	113, 775
RsaI	GTAC	5 cut(s)	397, 486, 741, 867, 900
RsaNI	GTAC	5 cut(s)	396, 485, 740, 866, 899
RseI	CAYNNNNRTG	2 cut(s)	353, 936
SaqAI	TTAA	2 cut(s)	168, 576
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	113, 378, 775
Sau96I	GGNCC	2 cut(s)	195, 532
SchI	GAGTC	3 cut(s)	24, 113, 427
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	195, 532
SmiMI	CAYNNNNRTG	2 cut(s)	353, 936
SmlI	CTYRAG	5 cut(s)	289, 415, 423, 480, 892
SmoI	CTYRAG	5 cut(s)	289, 415, 423, 480, 892
SphI	GCATGC	2 cut(s)	790, 794
Sse9I	AATT	6 cut(s)	170, 216, 270, 453, 609, 852
SspMI	CTAG	2 cut(s)	809, 927
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	49, 352
TaiI	ACGT	4 cut(s)	41, 466, 589, 636
TaqI	TCGA	1 cut(s)	265
TasI	AATT	6 cut(s)	170, 216, 270, 453, 609, 852
TatI	WGTACW	2 cut(s)	739, 898
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	168, 576
Tru9I	TTAA	2 cut(s)	168, 576
TscAI	CASTG	2 cut(s)	52, 355
TseFI	GTSAC	3 cut(s)	43, 258, 626
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	3 cut(s)	43, 258, 626
TspDTI	ATGAA	3 cut(s)	29, 269, 540
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	52, 355
Van91I	CCANNNNNTGG	1 cut(s)	837
VpaK11BI	GGWCC	2 cut(s)	195, 532
XapI	RAATTY	2 cut(s)	170, 216
XceI	RCATGY	2 cut(s)	790, 794
XmnI	GAANNNNTTC	2 cut(s)	434, 507
XspI	CTAG	2 cut(s)	809, 927
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.