Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014358

Physical Location & Seq

Genomic Coordinates Forward (+)

31819357 .. 31829333

Gene Structure 9977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTGCTGCGATGAAGATTGTGTTCGGACTCCTTACGTTTGTCACTGTCGGAATGATTATAGGTGCTTTGTTCCAGTTGGCATTTATACGAAGATTGGAAGAGTCGTATGGATCTGAGTTTCCAGCTTCAAGGAGACTGGGCAGAAGTCTAAATGATGGCTATCTTAAATTCCCCAGAGTGGTGTTAAGATTAAGGTATAAACTTCTTCAGGTTGCTAGAGTGAGCTGGGTGCCATCTCAGCTGGTACTTCTTCTGCTGAGAGGTTTCTTCCTTCTGGAGGTGGAAGATAAAGTGTTGTTGGAGGAACTCGTGTTAGCCAATTTTTCGAGTGGTTTCATCACAAAGGAAAAATGTGTTCCTCATTGGACCAATGACAAAGAAGCAGAAATTTTACGCCTTGGATATGTCAAACCAGAAGTGATAAGCTGGTTACCTCGAATAATTGTGCTTCATAACTTCTTGAGCATGGAGGAATGCGACTATCTTAGAGCTATTGCCTCTCCTCGCCTTGAAGTATCCACTGTAGTGGACATCAAAACAGGAAAGGGGATCAAGAGTAAGGTTCGTACCAGCTCTGGTATGTTCTTGAGTCCTCAAGAGAAAAAGTTCCCAATGATACAGGCAATTGAAAAACGTATTTCTGTCTATTCTCAAGTACCAATAGAAAATGGGGAACTGATTCAAGTTTTGAGGTATGAAAAGGACCAGTATTATAAACCTCATCACGACTACTTCTCTGACACTTTTAACTTGAAACGTGGTGGTCAGCGAGTAGCAACAATTCTGATGTATCTGAGTGACAATGTTGAGGGTGGAGAAACTTATTTTCCCATGGCTGGCTCAGGTGAATGTAGCTGTGGTGGAAAAGTTGTCAAGGGTATGTCTGTCAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATACATGCAGGGTGCGAGGTGCTAGCTGGGGAAAAGTGGTCAGCCACAAAATGGATGAGGCAAAGAGCTACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006082 GO:0006464 GO:0006520 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018401 GO:0019471 GO:0019511 GO:0019538 GO:0019752 GO:0019798 GO:0031543 GO:0031545 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:0140096 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

345

Amino Acids

38.94

Weight (kDa)

9.2

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	227 - 340	3e-10	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	228 - 340	7.6e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43080
fragaria_vesca	FvH4_4g11880 FvH4_4g11880 FvH4_4g11880
malus_domestica	MD04G1030700.v1.1
prunus_persica	Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1
pyrus_communis	pycom04g02600
rosa_chinensis	RchiOBHm_Chr4g0409351
rosa_laevigata	RLG00000008567
rosa_multiflora	Rmu_sc0001616.1_g000050
rosa_roxburghii	Rroxscaffold_5G00353870
rosa_rugosa	Rorug04G0093100
rosa_samantha	Rh4AG155700 Rh4BG154200 Rh4DG148700
rosa_wichuraiana	Rw4G012740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	1011
AclWI	GGATC	3 cut(s)	121, 560, 944
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	170, 390
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	4 cut(s)	249, 571, 660, 915
AfiI	CCNNNNNNNGG	5 cut(s)	181, 280, 839, 902, 1011
AgsI	TTSAA	5 cut(s)	132, 515, 632, 686, 757
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	9 cut(s)	128, 228, 244, 429, 494, 576, 858, 986, 1028
AluI	AGCT	9 cut(s)	128, 228, 244, 429, 494, 576, 858, 986, 1028
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	121, 560, 944
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	2 cut(s)	170, 390
Asp700I	GAANNNNTTC	2 cut(s)	608, 681
AspS9I	GGNCC	2 cut(s)	369, 706
AsuHPI	GGTGA	1 cut(s)	860
AsuNHI	GCTAGC	1 cut(s)	982
AvaII	GGWCC	2 cut(s)	369, 706
BalI	TGGCCA	1 cut(s)	942
BanI	GGYRCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	311
BccI	CCATC	3 cut(s)	152, 244, 932
BciVI	GTATCC	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	219, 983
BfmI	CTRYAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	2 cut(s)	369, 706
BmgT120I	GGNCC	2 cut(s)	369, 706
BmiI	GGNNCC	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	898
BmtI	GCTAGC	1 cut(s)	986
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	299, 943
Bpu10I	CCTNAGC	1 cut(s)	844
BpuEI	CTTGAG	4 cut(s)	484, 582, 610, 639
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	400, 834
BsaXI	ACNNNNNCTCC	4 cut(s)	897, 916, 927, 946
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 280, 839, 902, 1011
Bse1I	ACTGG	3 cut(s)	76, 144, 709
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	400, 834
BseGI	GGATG	2 cut(s)	943, 1020
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	181, 280, 839, 902, 1011
BseMII	CTCAG	5 cut(s)	108, 251, 254, 788, 858
BseNI	ACTGG	3 cut(s)	76, 144, 709
BseRI	GAGGAG	1 cut(s)	495
BseYI	CCCAGC	2 cut(s)	228, 986
BshFI	GGCC	1 cut(s)	942
BshNI	GGYRCC	1 cut(s)	232
BslI	CCNNNNNNNGG	5 cut(s)	181, 280, 839, 902, 1011
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	942
Bsp143I	GATC	3 cut(s)	113, 552, 949
Bsp19I	CCATGG	1 cut(s)	834
BspANI	GGCC	1 cut(s)	942
BspCNI	CTCAG	5 cut(s)	109, 252, 253, 789, 857
BspLI	GGNNCC	1 cut(s)	234
BspOI	GCTAGC	1 cut(s)	986
BspPI	GGATC	3 cut(s)	121, 560, 944
BspT107I	GGYRCC	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	76, 144, 709
BssECI	CCNNGG	2 cut(s)	400, 834
BssMI	GATC	3 cut(s)	113, 552, 949
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	400, 834
Bst2BI	CACGAG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	49, 526
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	841, 984
BstDEI	CTNAG	6 cut(s)	117, 240, 260, 488, 797, 844
BstDSI	CCRYGG	1 cut(s)	834
BstEII	GGTNACC	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	943, 1020
BstKTI	GATC	3 cut(s)	116, 555, 952
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	113, 552, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	968
BstPI	GGTNACC	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	525
BstX2I	RGATCY	2 cut(s)	113, 949
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	2 cut(s)	113, 949
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	943, 1020
BtsIMutI	CAGTG	2 cut(s)	45, 522
Cac8I	GCNNGC	2 cut(s)	841, 984
Cfr13I	GGNCC	2 cut(s)	369, 706
Csp6I	GTAC	4 cut(s)	248, 570, 659, 914
CviAII	CATG	4 cut(s)	469, 835, 928, 965
CviQI	GTAC	4 cut(s)	248, 570, 659, 914
DdeI	CTNAG	6 cut(s)	117, 240, 260, 488, 797, 844
DpnI	GATC	3 cut(s)	115, 554, 951
DpnII	GATC	3 cut(s)	113, 552, 949
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	400, 834
Eco47I	GGWCC	2 cut(s)	369, 706
Eco57I	CTGAAG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	400, 834
ErhI	CCWWGG	2 cut(s)	400, 834
FaeI	CATG	4 cut(s)	472, 838, 931, 968
FatI	CATG	4 cut(s)	468, 834, 927, 964
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	950, 1027
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	219, 983
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	2 cut(s)	232, 990
GsuI	CTGGAG	2 cut(s)	299, 943
HaeIII	GGCC	1 cut(s)	942
Hin1II	CATG	4 cut(s)	472, 838, 931, 968
HinfI	GANTC	4 cut(s)	30, 104, 592, 682
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	7 cut(s)	29, 53, 118, 742, 789, 798, 949
Hpy188III	TCNNGA	9 cut(s)	278, 463, 556, 589, 599, 728, 922, 935, 1035
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	49, 526
HpyCH4IV	ACGT	3 cut(s)	38, 637, 760
HpyCH4V	TGCA	1 cut(s)	968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	6 cut(s)	117, 240, 260, 488, 797, 844
HpySE526I	ACGT	3 cut(s)	38, 637, 760
Hsp92II	CATG	4 cut(s)	472, 838, 931, 968
Kzo9I	GATC	3 cut(s)	113, 552, 949
LmnI	GCTCC	1 cut(s)	924
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	2 cut(s)	219, 983
MaeII	ACGT	3 cut(s)	38, 637, 760
MaeIII	GTNAC	3 cut(s)	43, 432, 800
MalI	GATC	3 cut(s)	115, 554, 951
MboI	GATC	3 cut(s)	113, 552, 949
MboII	GAAGA	7 cut(s)	28, 105, 113, 200, 245, 262, 299
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	113, 949
MlsI	TGGCCA	1 cut(s)	942
MluCI	AATT	6 cut(s)	170, 322, 390, 444, 627, 783
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	3 cut(s)	24, 113, 601
MmeI	TCCRAC	2 cut(s)	31, 282
Mox20I	TGGCCA	1 cut(s)	942
MroXI	GAANNNNTTC	2 cut(s)	608, 681
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	4 cut(s)	168, 188, 194, 750
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	942
MspA1I	CMGCKG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	3 cut(s)	113, 552, 949
NheI	GCTAGC	1 cut(s)	982
NlaIII	CATG	4 cut(s)	472, 838, 931, 968
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	2 cut(s)	43, 800
NspI	RCATGY	1 cut(s)	968
OliI	CACNNNNGTG	1 cut(s)	527
PctI	GAATGC	1 cut(s)	482
PdmI	GAANNNNTTC	2 cut(s)	608, 681
PfeI	GAWTC	1 cut(s)	682
PflMI	CCANNNNNTGG	1 cut(s)	1011
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	3 cut(s)	24, 112, 600
PpsI	GAGTC	3 cut(s)	24, 112, 600
PsiI	TTATAA	1 cut(s)	717
PspEI	GGTNACC	1 cut(s)	432
PspFI	CCCAGC	2 cut(s)	228, 986
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	369, 706
PsuI	RGATCY	2 cut(s)	113, 949
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	4 cut(s)	249, 571, 660, 915
RsaNI	GTAC	4 cut(s)	248, 570, 659, 914
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	168, 188, 194, 750
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	113, 552, 949
Sau96I	GGNCC	2 cut(s)	369, 706
SchI	GAGTC	3 cut(s)	24, 113, 601
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	2 cut(s)	369, 706
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	4 cut(s)	463, 589, 597, 654
SmoI	CTYRAG	4 cut(s)	463, 589, 597, 654
Sse9I	AATT	6 cut(s)	170, 322, 390, 444, 627, 783
SspMI	CTAG	2 cut(s)	219, 983
StyI	CCWWGG	2 cut(s)	400, 834
TaaI	ACNGT	2 cut(s)	49, 526
TaiI	ACGT	3 cut(s)	41, 640, 763
TaqI	TCGA	2 cut(s)	329, 439
TasI	AATT	6 cut(s)	170, 322, 390, 444, 627, 783
TatI	WGTACW	1 cut(s)	913
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	4 cut(s)	168, 188, 194, 750
Tru9I	TTAA	4 cut(s)	168, 188, 194, 750
TscAI	CASTG	2 cut(s)	52, 529
TseFI	GTSAC	2 cut(s)	43, 800
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	2 cut(s)	43, 800
TspDTI	ATGAA	4 cut(s)	29, 328, 443, 714
TspRI	CASTG	2 cut(s)	52, 529
Van91I	CCANNNNNTGG	1 cut(s)	1011
VpaK11BI	GGWCC	2 cut(s)	369, 706
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	2 cut(s)	170, 390
XceI	RCATGY	1 cut(s)	968
XmnI	GAANNNNTTC	2 cut(s)	608, 681
XspI	CTAG	2 cut(s)	219, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.