prolyl 4-hydroxylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43080 |
| fragaria_vesca | FvH4_4g11880 FvH4_4g11880 FvH4_4g11880 |
| malus_domestica | MD04G1030700.v1.1 |
| prunus_persica | Prupe.1G180100_v2.0.a1 Prupe.1G180100_v2.0.a1 |
| pyrus_communis | pycom04g02600 |
| rosa_chinensis | RchiOBHm_Chr4g0409351 |
| rosa_laevigata | RLG00000008567 |
| rosa_multiflora | Rmu_sc0001616.1_g000050 |
| rosa_roxburghii | Rroxscaffold_5G00353870 |
| rosa_rugosa | Rorug04G0093100 |
| rosa_samantha | Rh4AG155700 Rh4BG154200 Rh4DG148700 |
| rosa_wichuraiana | Rw4G012740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 689 |
| AciI | CCGC | 2 cut(s) | 639, 684 |
| AclWI | GGATC | 3 cut(s) | 537, 767, 780 |
| AcsI | RAATTY | 1 cut(s) | 213 |
| AcuI | CTGAAG | 1 cut(s) | 261 |
| AfaI | GTAC | 7 cut(s) | 273, 434, 521, 679, 738, 804, 853 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 725 |
| AgsI | TTSAA | 6 cut(s) | 77, 338, 455, 509, 580, 761 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 695 |
| AjnI | CCWGG | 1 cut(s) | 222 |
| AleI | CACNNNNGTG | 1 cut(s) | 350 |
| AluBI | AGCT | 3 cut(s) | 252, 502, 695 |
| AluI | AGCT | 3 cut(s) | 252, 502, 695 |
| Alw21I | GWGCWC | 2 cut(s) | 187, 504 |
| Alw26I | GTCTC | 2 cut(s) | 346, 638 |
| AlwI | GGATC | 3 cut(s) | 537, 767, 780 |
| ApeKI | GCWGC | 2 cut(s) | 5, 31 |
| ApoI | RAATTY | 1 cut(s) | 213 |
| AsuC2I | CCSGG | 2 cut(s) | 177, 811 |
| AsuHPI | GGTGA | 1 cut(s) | 539 |
| BamHI | GGATCC | 1 cut(s) | 772 |
| BanII | GRGCYC | 1 cut(s) | 504 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 2 cut(s) | 187, 504 |
| BbvI | GCAGC | 1 cut(s) | 18 |
| BccI | CCATC | 2 cut(s) | 133, 152 |
| BciT130I | CCWGG | 1 cut(s) | 224 |
| BclI | TGATCA | 1 cut(s) | 57 |
| BcnI | CCSGG | 2 cut(s) | 177, 811 |
| BcoDI | GTCTC | 2 cut(s) | 346, 638 |
| BfaI | CTAG | 2 cut(s) | 132, 663 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfuAI | ACCTGC | 1 cut(s) | 689 |
| BisI | GCNGC | 2 cut(s) | 6, 32 |
| BlsI | GCNGC | 2 cut(s) | 7, 33 |
| BmcAI | AGTACT | 1 cut(s) | 738 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 224, 811 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 695 |
| BmiI | GGNNCC | 2 cut(s) | 258, 774 |
| BmrFI | CCNGG | 3 cut(s) | 177, 224, 811 |
| BmsI | GCATC | 1 cut(s) | 721 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 3 cut(s) | 307, 433, 462 |
| BpuMI | CCSGG | 2 cut(s) | 177, 811 |
| BsaBI | GATNNNNATC | 1 cut(s) | 162 |
| BsaI | GGTCTC | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 2 cut(s) | 223, 810 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 725 |
| Bse3DI | GCAATG | 1 cut(s) | 202 |
| Bse8I | GATNNNNATC | 1 cut(s) | 162 |
| BseBI | CCWGG | 1 cut(s) | 224 |
| BseDI | CCNNGG | 2 cut(s) | 223, 810 |
| BseGI | GGATG | 3 cut(s) | 361, 736, 843 |
| BseJI | GATNNNNATC | 1 cut(s) | 162 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 725 |
| BseMI | GCAATG | 1 cut(s) | 202 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseXI | GCAGC | 1 cut(s) | 18 |
| BseYI | CCCAGC | 1 cut(s) | 252 |
| BsiHKAI | GWGCWC | 2 cut(s) | 187, 504 |
| BsiSI | CCGG | 2 cut(s) | 177, 810 |
| BslFI | GGGAC | 1 cut(s) | 402 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 725 |
| BsmAI | GTCTC | 2 cut(s) | 346, 638 |
| BsmFI | GGGAC | 1 cut(s) | 402 |
| Bso31I | GGTCTC | 1 cut(s) | 638 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 504 |
| Bsp143I | GATC | 3 cut(s) | 57, 529, 772 |
| BspACI | CCGC | 2 cut(s) | 639, 684 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspLI | GGNNCC | 2 cut(s) | 258, 774 |
| BspMI | ACCTGC | 1 cut(s) | 689 |
| BspPI | GGATC | 3 cut(s) | 537, 767, 780 |
| BspTNI | GGTCTC | 1 cut(s) | 638 |
| BsrDI | GCAATG | 1 cut(s) | 202 |
| BssECI | CCNNGG | 2 cut(s) | 223, 810 |
| BssMI | GATC | 3 cut(s) | 57, 529, 772 |
| Bst2UI | CCWGG | 1 cut(s) | 224 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 349 |
| Bst6I | CTCTTC | 1 cut(s) | 417 |
| BstDEI | CTNAG | 3 cut(s) | 117, 311, 858 |
| BstF5I | GGATG | 3 cut(s) | 361, 736, 843 |
| BstKTI | GATC | 3 cut(s) | 60, 532, 775 |
| BstMAI | GTCTC | 2 cut(s) | 346, 638 |
| BstMBI | GATC | 3 cut(s) | 57, 529, 772 |
| BstNI | CCWGG | 1 cut(s) | 224 |
| BstSCI | CCNGG | 3 cut(s) | 175, 222, 809 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 18 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstX2I | RGATCY | 1 cut(s) | 772 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 352 |
| BstYI | RGATCY | 1 cut(s) | 772 |
| BtsCI | GGATG | 3 cut(s) | 361, 736, 843 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 345 |
| BveI | ACCTGC | 1 cut(s) | 689 |
| Csp6I | GTAC | 7 cut(s) | 272, 433, 520, 678, 737, 803, 852 |
| CviAII | CATG | 4 cut(s) | 292, 551, 751, 788 |
| CviQI | GTAC | 7 cut(s) | 272, 433, 520, 678, 737, 803, 852 |
| DdeI | CTNAG | 3 cut(s) | 117, 311, 858 |
| DpnI | GATC | 3 cut(s) | 59, 531, 774 |
| DpnII | GATC | 3 cut(s) | 57, 529, 772 |
| DriI | GACNNNNNGTC | 1 cut(s) | 695 |
| Eam1104I | CTCTTC | 1 cut(s) | 417 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 695 |
| EarI | CTCTTC | 1 cut(s) | 417 |
| EciI | GGCGGA | 1 cut(s) | 654 |
| Ecl136II | GAGCTC | 1 cut(s) | 502 |
| Eco24I | GRGCYC | 1 cut(s) | 504 |
| Eco31I | GGTCTC | 1 cut(s) | 638 |
| Eco53kI | GAGCTC | 1 cut(s) | 502 |
| Eco57I | CTGAAG | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 1 cut(s) | 502 |
| EcoRII | CCWGG | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 504 |
| FaeI | CATG | 4 cut(s) | 295, 554, 754, 791 |
| FaqI | GGGAC | 1 cut(s) | 402 |
| FatI | CATG | 4 cut(s) | 291, 550, 750, 787 |
| FauNDI | CATATG | 1 cut(s) | 109 |
| FbaI | TGATCA | 1 cut(s) | 57 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 32 |
| FokI | GGATG | 3 cut(s) | 368, 743, 850 |
| FriOI | GRGCYC | 1 cut(s) | 504 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 32 |
| FspBI | CTAG | 2 cut(s) | 132, 663 |
| GluI | GCNGC | 2 cut(s) | 6, 32 |
| GsaI | CCCAGC | 1 cut(s) | 256 |
| HapII | CCGG | 2 cut(s) | 177, 810 |
| Hin1II | CATG | 4 cut(s) | 295, 554, 754, 791 |
| HinfI | GANTC | 3 cut(s) | 104, 415, 754 |
| HpaII | CCGG | 2 cut(s) | 177, 810 |
| HphI | GGTGA | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 689 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 53, 118, 565, 612, 777 |
| Hpy188III | TCNNGA | 4 cut(s) | 286, 412, 419, 758 |
| Hpy8I | GTNNAC | 1 cut(s) | 689 |
| Hpy99I | CGWCG | 1 cut(s) | 781 |
| HpyAV | CCTTC | 2 cut(s) | 344, 755 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 349 |
| HpyCH4IV | ACGT | 2 cut(s) | 583, 850 |
| HpyCH4V | TGCA | 1 cut(s) | 734 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 311, 858 |
| HpySE526I | ACGT | 2 cut(s) | 583, 850 |
| Hsp92II | CATG | 4 cut(s) | 295, 554, 754, 791 |
| Ksp22I | TGATCA | 1 cut(s) | 57 |
| Kzo9I | GATC | 3 cut(s) | 57, 529, 772 |
| LmnI | GCTCC | 5 cut(s) | 13, 192, 256, 499, 747 |
| Lsp1109I | GCAGC | 1 cut(s) | 18 |
| LweI | GCATC | 1 cut(s) | 721 |
| MaeI | CTAG | 2 cut(s) | 132, 663 |
| MaeII | ACGT | 2 cut(s) | 583, 850 |
| MaeIII | GTNAC | 3 cut(s) | 43, 302, 697 |
| MalI | GATC | 3 cut(s) | 59, 531, 774 |
| MboI | GATC | 3 cut(s) | 57, 529, 772 |
| MboII | GAAGA | 3 cut(s) | 105, 113, 434 |
| MfeI | CAATTG | 2 cut(s) | 77, 450 |
| MflI | RGATCY | 1 cut(s) | 772 |
| MhlI | GDGCHC | 2 cut(s) | 187, 504 |
| MluCI | AATT | 5 cut(s) | 77, 213, 267, 450, 606 |
| MlyI | GAGTC | 2 cut(s) | 98, 424 |
| MmeI | TCCRAC | 2 cut(s) | 31, 800 |
| MseI | TTAA | 2 cut(s) | 515, 573 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspA1I | CMGCKG | 1 cut(s) | 252 |
| MspI | CCGG | 2 cut(s) | 177, 810 |
| MspR9I | CCNGG | 3 cut(s) | 177, 224, 811 |
| MunI | CAATTG | 2 cut(s) | 77, 450 |
| MvaI | CCWGG | 1 cut(s) | 224 |
| NciI | CCSGG | 2 cut(s) | 177, 811 |
| NdeI | CATATG | 1 cut(s) | 109 |
| NdeII | GATC | 3 cut(s) | 57, 529, 772 |
| NlaIII | CATG | 4 cut(s) | 295, 554, 754, 791 |
| NlaIV | GGNNCC | 2 cut(s) | 258, 774 |
| NmuCI | GTSAC | 3 cut(s) | 43, 302, 697 |
| OliI | CACNNNNGTG | 1 cut(s) | 350 |
| PfeI | GAWTC | 1 cut(s) | 754 |
| PkrI | GCNGC | 2 cut(s) | 7, 33 |
| PleI | GAGTC | 2 cut(s) | 98, 423 |
| PpsI | GAGTC | 2 cut(s) | 98, 423 |
| Psp124BI | GAGCTC | 1 cut(s) | 504 |
| Psp6I | CCWGG | 1 cut(s) | 222 |
| PspFI | CCCAGC | 1 cut(s) | 252 |
| PspGI | CCWGG | 1 cut(s) | 222 |
| PspN4I | GGNNCC | 2 cut(s) | 258, 774 |
| PsuI | RGATCY | 1 cut(s) | 772 |
| PvuII | CAGCTG | 1 cut(s) | 252 |
| RsaI | GTAC | 7 cut(s) | 273, 434, 521, 679, 738, 804, 853 |
| RsaNI | GTAC | 7 cut(s) | 272, 433, 520, 678, 737, 803, 852 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacI | GAGCTC | 1 cut(s) | 504 |
| SaqAI | TTAA | 2 cut(s) | 515, 573 |
| SatI | GCNGC | 2 cut(s) | 6, 32 |
| Sau3AI | GATC | 3 cut(s) | 57, 529, 772 |
| ScaI | AGTACT | 1 cut(s) | 738 |
| SchI | GAGTC | 2 cut(s) | 98, 424 |
| ScrFI | CCNGG | 3 cut(s) | 177, 224, 811 |
| SduI | GDGCHC | 2 cut(s) | 187, 504 |
| SfaNI | GCATC | 1 cut(s) | 721 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 3 cut(s) | 286, 412, 477 |
| SmoI | CTYRAG | 3 cut(s) | 286, 412, 477 |
| Sse9I | AATT | 5 cut(s) | 77, 213, 267, 450, 606 |
| SsiI | CCGC | 2 cut(s) | 639, 684 |
| SspMI | CTAG | 2 cut(s) | 132, 663 |
| SstI | GAGCTC | 1 cut(s) | 504 |
| StyD4I | CCNGG | 3 cut(s) | 175, 222, 809 |
| TaaI | ACNGT | 2 cut(s) | 49, 349 |
| TaiI | ACGT | 2 cut(s) | 586, 853 |
| TaqI | TCGA | 1 cut(s) | 262 |
| TasI | AATT | 5 cut(s) | 77, 213, 267, 450, 606 |
| TatI | WGTACW | 2 cut(s) | 271, 736 |
| TfiI | GAWTC | 1 cut(s) | 754 |
| Tru1I | TTAA | 2 cut(s) | 515, 573 |
| Tru9I | TTAA | 2 cut(s) | 515, 573 |
| TscAI | CASTG | 2 cut(s) | 52, 352 |
| TseFI | GTSAC | 3 cut(s) | 43, 302, 697 |
| TseI | GCWGC | 2 cut(s) | 5, 31 |
| Tsp45I | GTSAC | 3 cut(s) | 43, 302, 697 |
| TspDTI | ATGAA | 3 cut(s) | 29, 266, 767 |
| TspRI | CASTG | 2 cut(s) | 52, 352 |
| XapI | RAATTY | 1 cut(s) | 213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 655 |
| XspI | CTAG | 2 cut(s) | 132, 663 |
| ZrmI | AGTACT | 1 cut(s) | 738 |