Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Forward (+)

15973616 .. 15976707

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12260.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTATCATTCTTACTCCCCCCCAACCATATACCTATTGGGTTCCTTCATTTCCTCAACAATGGCTTCCTCCTCCTCCACCCTTGTCCTCTCAACCCTCTTCTCTTCCCTCCCTCGCCAAACCCAAAACCCAAATACCAAACACCTCTTCTCCTCATTTCCCACTTCCCAAAAACTCCCTAAAGTGACCCTCACTCGTTCAGCGTTGCTGAGACCCAACACAGCTTCCAATCAGATTCTACTCTTGAGGAGGTTTCGAGCCTACACGACCATCAGAGATGCTGATAAGGAGGAGGAGCAGGCGGTTGTGGGCGAGGACTCGGCGGAGTTTCTGCTGTCGAAGCAGAAGCTGTCTTCCTGGCTTTATTTCACTGCGATTCTCGGGACTGTGTTGTTTGTGCTCAACGTGGCTTGGATTGATAATTCCACCGGGTTTGGGAAGCCCTTCATCGAAGCGGTTTCCGAGCTTTCGGATAGCCCTGAGGTTGTAATGTTGCTCCTGATTCTCATATTTGCCATAGTCCATAGTGGTTTGGCTAGCCTACGAGACACTGGTGAGAAGCTTATTGGAGAACGTGCTTTCCGCGTTTTGTTTGCAGGGACATCTTTACCATTGGCTGTTAGTACTGTTGTATATTTCATTAACCACAGATATGATGGAGTACAGTTATGGCAGCTGAAGGATGTATTTGGTGTACATGAATTGGTGTGGTTGTCTAATTTTGTTTCGTTCTTCTTTCTTTATCCATCGACTTTCAATCTACTAGAGGTAGCAGCTGTTGACAAGCCCAAAATGCATCTTTGGGAAACTGGGATTATGAGAATCACCAGGCATCCACAGCTTGTAGGGCAGGTGGTTTGGTGCTTGGCTCACACAATTTGGATCGGAAACTCGGTGACAGTGGCAGCTTCTATTGGTTTAATTGGGCATCACCTATTTGGTGCTTGGAATGGTGACCGGAGATTGGCTATAAGATATGGGGAAAACTTTGAAGTTGTGAAGAAGCGAACAAGTATTTTACCTTTTGCTGCCATTATTGATGGCCGTCAAAAGTTGCCAAAAGATTACTACAAGGAATTTATTCGGTTGCCTTATTTTGTGATCACTGCATTGACGTTAGGCACATACTTCGCACACCCCCTTATGCAAGCAGCCAGTTTTGGGCTCCATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

392

Amino Acids

44.03

Weight (kDa)

9.35

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	841
Acc36I	ACCTGC	1 cut(s)	841
AccII	CGCG	1 cut(s)	585
AciI	CCGC	4 cut(s)	302, 323, 455, 583
AclWI	GGATC	1 cut(s)	890
AcoI	YGGCCR	1 cut(s)	1042
AcsI	RAATTY	1 cut(s)	1076
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	3 cut(s)	625, 663, 696
AfiI	CCNNNNNNNGG	3 cut(s)	435, 964, 1161
AgsI	TTSAA	2 cut(s)	757, 992
AjnI	CCWGG	2 cut(s)	356, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	8 cut(s)	224, 349, 466, 562, 676, 776, 841, 908
AluI	AGCT	8 cut(s)	224, 349, 466, 562, 676, 776, 841, 908
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	205, 540
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	1042
ApeKI	GCWGC	5 cut(s)	673, 773, 905, 1028, 1151
ApoI	RAATTY	1 cut(s)	1076
Asp700I	GAANNNNTTC	2 cut(s)	443, 1080
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	5 cut(s)	566, 817, 907, 923, 965
AsuNHI	GCTAGC	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	1167
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	685, 785, 917, 1015, 1163
BccI	CCATC	4 cut(s)	278, 650, 754, 1034
BceAI	ACGGC	1 cut(s)	1029
BcgI	CGANNNNNNTGC	2 cut(s)	1111, 1145
BciT130I	CCWGG	2 cut(s)	358, 829
BclI	TGATCA	1 cut(s)	1101
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	205, 540
BfaI	CTAG	2 cut(s)	537, 764
BfuAI	ACCTGC	1 cut(s)	841
BisI	GCNGC	5 cut(s)	674, 774, 906, 1029, 1152
BlsI	GCNGC	5 cut(s)	675, 775, 907, 1030, 1153
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	3 cut(s)	358, 430, 829
BmeT110I	CYCGRG	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	43, 1166
BmrFI	CCNGG	3 cut(s)	358, 430, 829
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	4 cut(s)	268, 805, 841, 937
BmtI	GCTAGC	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	957
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 964, 1161
Bse1I	ACTGG	3 cut(s)	556, 814, 1155
Bse21I	CCTNAGG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	358, 829
BseGI	GGATG	2 cut(s)	688, 832
BseLI	CCNNNNNNNGG	3 cut(s)	435, 964, 1161
BseMII	CTCAG	2 cut(s)	200, 471
BseNI	ACTGG	3 cut(s)	556, 814, 1155
BseRI	GAGGAG	6 cut(s)	61, 64, 142, 262, 305, 308
BseXI	GCAGC	5 cut(s)	685, 785, 917, 1015, 1163
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	1044
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	429, 958
BslFI	GGGAC	2 cut(s)	397, 613
BslI	CCNNNNNNNGG	3 cut(s)	435, 964, 1161
BsmAI	GTCTC	2 cut(s)	205, 540
BsmFI	GGGAC	2 cut(s)	397, 613
BsnI	GGCC	1 cut(s)	1044
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	402, 1167
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	2 cut(s)	882, 1101
BspACI	CCGC	4 cut(s)	302, 323, 455, 583
BspANI	GGCC	1 cut(s)	1044
BspCNI	CTCAG	2 cut(s)	201, 472
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	43, 1166
BspMI	ACCTGC	1 cut(s)	841
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	556, 814, 1155
BssMI	GATC	2 cut(s)	882, 1101
Bst2UI	CCWGG	2 cut(s)	358, 829
Bst4CI	ACNGT	4 cut(s)	388, 628, 666, 901
Bst6I	CTCTTC	3 cut(s)	104, 109, 152
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	300, 538, 1149
BstDEI	CTNAG	2 cut(s)	209, 480
BstEII	GGTNACC	1 cut(s)	953
BstF5I	GGATG	2 cut(s)	688, 832
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	2 cut(s)	885, 1104
BstMAI	GTCTC	2 cut(s)	205, 540
BstMBI	GATC	2 cut(s)	882, 1101
BstMWI	GCNNNNNNNGC	4 cut(s)	340, 793, 838, 847
BstNI	CCWGG	2 cut(s)	358, 829
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	3 cut(s)	356, 428, 827
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	5 cut(s)	685, 785, 917, 1015, 1163
BstV2I	GAAGAC	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	1044
BtsCI	GGATG	2 cut(s)	688, 832
BtsI	GCAGTG	2 cut(s)	369, 1104
BtsIMutI	CAGTG	4 cut(s)	369, 549, 906, 1104
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	3 cut(s)	300, 538, 1149
CaiI	CAGNNNCTG	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	624, 662, 695
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	1 cut(s)	698
CviQI	GTAC	3 cut(s)	624, 662, 695
DdeI	CTNAG	2 cut(s)	209, 480
DpnI	GATC	2 cut(s)	884, 1103
DpnII	GATC	2 cut(s)	882, 1101
EaeI	YGGCCR	1 cut(s)	1042
Eam1104I	CTCTTC	3 cut(s)	104, 109, 152
EarI	CTCTTC	3 cut(s)	104, 109, 152
EciI	GGCGGA	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	698
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	953
EcoO65I	GGTNACC	1 cut(s)	953
EcoRII	CCWGG	2 cut(s)	356, 827
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	1167
FaeI	CATG	1 cut(s)	701
FaqI	GGGAC	2 cut(s)	397, 613
FatI	CATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	1101
Fnu4HI	GCNGC	5 cut(s)	674, 774, 906, 1029, 1152
FokI	GGATG	2 cut(s)	695, 819
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	5 cut(s)	674, 774, 906, 1029, 1152
FspBI	CTAG	2 cut(s)	537, 764
GluI	GCNGC	5 cut(s)	674, 774, 906, 1029, 1152
HaeIII	GGCC	1 cut(s)	1044
HapII	CCGG	2 cut(s)	429, 958
Hin1II	CATG	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	5 cut(s)	235, 317, 376, 502, 822
HpaII	CCGG	2 cut(s)	429, 958
HphI	GGTGA	5 cut(s)	566, 817, 907, 923, 965
Hpy166II	GTNNAC	2 cut(s)	695, 781
Hpy188I	TCNGA	5 cut(s)	234, 275, 463, 472, 887
Hpy188III	TCNNGA	3 cut(s)	244, 382, 499
Hpy8I	GTNNAC	2 cut(s)	695, 781
HpyAV	CCTTC	3 cut(s)	55, 454, 673
HpyCH4III	ACNGT	4 cut(s)	388, 628, 666, 901
HpyCH4IV	ACGT	3 cut(s)	405, 574, 1115
HpyCH4V	TGCA	4 cut(s)	596, 796, 1109, 1147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	340, 793, 838, 847
HpyF3I	CTNAG	2 cut(s)	209, 480
HpySE526I	ACGT	3 cut(s)	405, 574, 1115
Hsp92II	CATG	1 cut(s)	701
Ksp22I	TGATCA	1 cut(s)	1101
Kzo9I	GATC	2 cut(s)	882, 1101
LmnI	GCTCC	3 cut(s)	295, 501, 1170
Lsp1109I	GCAGC	5 cut(s)	685, 785, 917, 1015, 1163
LweI	GCATC	4 cut(s)	268, 805, 841, 937
MaeI	CTAG	2 cut(s)	537, 764
MaeII	ACGT	3 cut(s)	405, 574, 1115
MaeIII	GTNAC	3 cut(s)	184, 895, 953
MalI	GATC	2 cut(s)	884, 1103
MboI	GATC	2 cut(s)	882, 1101
MboII	GAAGA	6 cut(s)	91, 96, 139, 345, 724, 1012
MhlI	GDGCHC	2 cut(s)	402, 1167
MluCI	AATT	6 cut(s)	421, 701, 718, 876, 921, 1076
MlyI	GAGTC	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	798
MroXI	GAANNNNTTC	2 cut(s)	443, 1080
MseI	TTAA	2 cut(s)	642, 920
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	676, 776
MspI	CCGG	2 cut(s)	429, 958
MspR9I	CCNGG	3 cut(s)	358, 430, 829
MvaI	CCWGG	2 cut(s)	358, 829
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	340, 793, 838, 847
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	2 cut(s)	882, 1101
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	2 cut(s)	43, 1166
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	184, 895, 953
NsiI	ATGCAT	1 cut(s)	798
PaqCI	CACCTGC	1 cut(s)	841
PdmI	GAANNNNTTC	2 cut(s)	443, 1080
PfeI	GAWTC	4 cut(s)	235, 376, 502, 822
PkrI	GCNGC	5 cut(s)	675, 775, 907, 1030, 1153
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	356, 827
PspEI	GGTNACC	1 cut(s)	953
PspGI	CCWGG	2 cut(s)	356, 827
PspN4I	GGNNCC	2 cut(s)	43, 1166
PstNI	CAGNNNCTG	1 cut(s)	349
PvuII	CAGCTG	2 cut(s)	676, 776
RsaI	GTAC	3 cut(s)	625, 663, 696
RsaNI	GTAC	3 cut(s)	624, 662, 695
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	642, 920
SatI	GCNGC	5 cut(s)	674, 774, 906, 1029, 1152
Sau3AI	GATC	2 cut(s)	882, 1101
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	358, 430, 829
SduI	GDGCHC	2 cut(s)	402, 1167
SfaNI	GCATC	4 cut(s)	268, 805, 841, 937
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	6 cut(s)	421, 701, 718, 876, 921, 1076
SsiI	CCGC	4 cut(s)	302, 323, 455, 583
SspMI	CTAG	2 cut(s)	537, 764
StyD4I	CCNGG	3 cut(s)	356, 428, 827
TaaI	ACNGT	4 cut(s)	388, 628, 666, 901
TaiI	ACGT	3 cut(s)	408, 577, 1118
TaqI	TCGA	4 cut(s)	256, 338, 450, 749
TasI	AATT	6 cut(s)	421, 701, 718, 876, 921, 1076
TatI	WGTACW	3 cut(s)	623, 661, 694
TfiI	GAWTC	4 cut(s)	235, 376, 502, 822
Tru1I	TTAA	2 cut(s)	642, 920
Tru9I	TTAA	2 cut(s)	642, 920
TscAI	CASTG	4 cut(s)	376, 556, 906, 1111
TseFI	GTSAC	3 cut(s)	184, 895, 953
TseI	GCWGC	5 cut(s)	673, 773, 905, 1028, 1151
Tsp45I	GTSAC	3 cut(s)	184, 895, 953
TspDTI	ATGAA	4 cut(s)	37, 436, 628, 714
TspRI	CASTG	4 cut(s)	376, 556, 906, 1111
XapI	RAATTY	1 cut(s)	1076
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 653
XmnI	GAANNNNTTC	2 cut(s)	443, 1080
XspI	CTAG	2 cut(s)	537, 764
ZrmI	AGTACT	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.