Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Forward (+)

2189546 .. 2192211

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCCTCCTCCTCCTCCACGTTTGTCCTCTCAACCCTCTTCTCTTCCTGTCCTCCCCAATCCCTAAACCCAAACAAGCCCAAGACCCCCTCCTTTTCATCCACCCGCCAAACCCTCAAAGCTTCCACCTTTCTGAAAGCCAACCAACAACCCACTTTCCACCCCATCCCTCGCAACCAAATTCACTTGTCCCGCAAATTTCGCACCTTCATCACCGTCAGAGACGGCAGCGACGGCGACGAGCAGCCGGTGGTGGGGGAGGACTCGGCTGAGTTTGTGTTGTCGAAGCAGAAGCTGTCCTCGTGGATTTATTTCACTGCAATTCTGGGTACTGTTCTGTTCATACTCAATGTGGCTTGGCTGGATAATTCCACCGGACTCGGAAAGCCCTTCGTCGATGCGGTTTCGGAACTTTCCGATAGCCCTGAGGTTGTGATGTTGATCCTGATTCTAATATTTGCCATTTTCCATAGTGGTTTGGCTAGTCTACGTGACGCAGGTGAGAAACTTATTGGTGAACGTGCTTTCCGTGTTTTGTTTGCGGGGACATCTTTACCACTGGCTGTTACTACTGTTGTGTTCTTTATTAACCACAGGTACGATGGACTACAGTTATGGGATGTGAAGAATGTATTTGGTGTCCATGAACTTGTGTGGCTCTCAAATTTCATTTCGTTCTTATTCCTTTATCCCTCAACTTTCAATCTACTAGAGGTAGCAGCCGTTGACAAGCCCAAAATGCATCTTTGGGAAACTGGGATTATGAGAATAACCAGGCATCCACAGCTGGCCGGACAGGTAATATGGTGCCTGGCTCACACGATTTGGATAGGGAACTCCGTGGCGGTGGCAGCTTCTCTTGGTTTAATCGGACACCACCTGTTTGGTGCTTGGAATGGTGACAGGAGATTAGCTGTAAGACACGGGGAGGCCTTTGAAGTTGTGAAGAAACGAACAAGTATCATACCATTTGCAGCGATTCTTGATGGCCGACAAAAGTTGCCCGAAGATTACTACAAGGAATTTATTCGGTTGCCATATTTGTCAATCACTGCGTTGACGTTAGGTGCATACTTTGCACACCCCCTTATGCAGGCAGCCAGTTTTCGGCTCCATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

374

Amino Acids

41.72

Weight (kDa)

9.28

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	807
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	5 cut(s)	106, 193, 401, 542, 845
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	2 cut(s)	789, 988
AcsI	RAATTY	4 cut(s)	180, 197, 664, 1022
AfaI	GTAC	2 cut(s)	331, 599
AfiI	CCNNNNNNNGG	3 cut(s)	254, 1093, 1107
AgsI	TTSAA	2 cut(s)	703, 938
AjnI	CCWGG	2 cut(s)	773, 810
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	5 cut(s)	122, 295, 787, 854, 914
AluI	AGCT	5 cut(s)	122, 295, 787, 854, 914
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	4 cut(s)	3, 789, 930, 988
ApeKI	GCWGC	6 cut(s)	228, 244, 719, 851, 974, 1097
ApoI	RAATTY	4 cut(s)	180, 197, 664, 1022
Asp700I	GAANNNNTTC	1 cut(s)	1026
AsuHPI	GGTGA	4 cut(s)	205, 512, 527, 911
AxyI	CCTNAGG	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	807
BauI	CACGAG	1 cut(s)	301
BbvI	GCAGC	6 cut(s)	240, 256, 731, 863, 986, 1109
BccI	CCATC	3 cut(s)	173, 596, 980
BceAI	ACGGC	3 cut(s)	241, 250, 707
BciT130I	CCWGG	2 cut(s)	775, 812
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	483, 710
BfmI	CTRYAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	6 cut(s)	229, 245, 720, 852, 975, 1098
BlsI	GCNGC	6 cut(s)	230, 246, 721, 853, 976, 1099
Bme1390I	CCNGG	2 cut(s)	775, 812
BmiI	GGNNCC	2 cut(s)	809, 1112
BmrFI	CCNGG	2 cut(s)	775, 812
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	388, 751, 787
BmuI	ACTGGG	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	840
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 1093, 1107
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	3 cut(s)	564, 760, 1101
Bse21I	CCTNAGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	775, 812
BseDI	CCNNGG	1 cut(s)	840
BseGI	GGATG	4 cut(s)	98, 165, 625, 778
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	254, 1093, 1107
BseMII	CTCAG	2 cut(s)	261, 417
BseNI	ACTGG	3 cut(s)	564, 760, 1101
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	6 cut(s)	240, 256, 731, 863, 986, 1109
BshFI	GGCC	4 cut(s)	5, 791, 932, 990
BshNI	GGYRCC	1 cut(s)	807
BsiSI	CCGG	3 cut(s)	248, 375, 792
BslFI	GGGAC	2 cut(s)	175, 559
BslI	CCNNNNNNNGG	3 cut(s)	254, 1093, 1107
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	175, 559
BsnI	GGCC	4 cut(s)	5, 791, 932, 990
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	5 cut(s)	106, 193, 401, 542, 845
BspANI	GGCC	4 cut(s)	5, 791, 932, 990
BspCNI	CTCAG	2 cut(s)	262, 418
BspLI	GGNNCC	2 cut(s)	809, 1112
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	564, 760, 1101
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	840
BssMI	GATC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	775, 812
Bst4CI	ACNGT	4 cut(s)	217, 334, 574, 612
Bst6I	CTCTTC	2 cut(s)	44, 49
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	789, 1095
BstDEI	CTNAG	2 cut(s)	270, 426
BstDSI	CCRYGG	1 cut(s)	840
BstENI	CCTNNNNNAGG	1 cut(s)	1091
BstF5I	GGATG	4 cut(s)	98, 165, 625, 778
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	201, 234, 739, 784, 851, 1076
BstNI	CCWGG	2 cut(s)	775, 812
BstSCI	CCNGG	2 cut(s)	773, 810
BstSFI	CTRYAG	1 cut(s)	608
BstV1I	GCAGC	6 cut(s)	240, 256, 731, 863, 986, 1109
BstXI	CCANNNNNNTGG	1 cut(s)	884
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	5, 791, 932, 990
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	4 cut(s)	98, 165, 625, 778
BtsI	GCAGTG	2 cut(s)	315, 1050
BtsIMutI	CAGTG	3 cut(s)	315, 557, 1050
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	789, 1095
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	247
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	330, 598
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	2 cut(s)	330, 598
DdeI	CTNAG	2 cut(s)	270, 426
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	789, 988
Eam1104I	CTCTTC	2 cut(s)	44, 49
EarI	CTCTTC	2 cut(s)	44, 49
Eco147I	AGGCCT	1 cut(s)	932
Eco81I	CCTNAGG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	1091
EcoRII	CCWGG	2 cut(s)	773, 810
EcoT22I	ATGCAT	1 cut(s)	744
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	647
FaqI	GGGAC	2 cut(s)	175, 559
FatI	CATG	1 cut(s)	643
FauI	CCCGC	3 cut(s)	113, 200, 535
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	6 cut(s)	229, 245, 720, 852, 975, 1098
FokI	GGATG	4 cut(s)	85, 152, 632, 765
Fsp4HI	GCNGC	6 cut(s)	229, 245, 720, 852, 975, 1098
FspBI	CTAG	2 cut(s)	483, 710
GluI	GCNGC	6 cut(s)	229, 245, 720, 852, 975, 1098
HaeIII	GGCC	4 cut(s)	5, 791, 932, 990
HapII	CCGG	3 cut(s)	248, 375, 792
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	1 cut(s)	647
HincII	GTYRAC	2 cut(s)	727, 1059
HindII	GTYRAC	2 cut(s)	727, 1059
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	4 cut(s)	263, 378, 448, 979
HpaII	CCGG	3 cut(s)	248, 375, 792
HphI	GGTGA	4 cut(s)	205, 512, 527, 911
Hpy166II	GTNNAC	4 cut(s)	488, 518, 727, 1059
Hpy188I	TCNGA	6 cut(s)	135, 221, 383, 409, 418, 872
Hpy188III	TCNNGA	2 cut(s)	445, 983
Hpy8I	GTNNAC	4 cut(s)	488, 518, 727, 1059
Hpy99I	CGWCG	3 cut(s)	236, 242, 398
HpyAV	CCTTC	2 cut(s)	217, 400
HpyCH4III	ACNGT	4 cut(s)	217, 334, 574, 612
HpyCH4IV	ACGT	4 cut(s)	20, 490, 520, 1061
HpyCH4V	TGCA	6 cut(s)	320, 742, 974, 1070, 1079, 1093
HpyF10VI	GCNNNNNNNGC	6 cut(s)	201, 234, 739, 784, 851, 1076
HpyF3I	CTNAG	2 cut(s)	270, 426
HpySE526I	ACGT	4 cut(s)	20, 490, 520, 1061
Hsp92II	CATG	1 cut(s)	647
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	1116
Lsp1109I	GCAGC	6 cut(s)	240, 256, 731, 863, 986, 1109
LweI	GCATC	3 cut(s)	388, 751, 787
MaeI	CTAG	2 cut(s)	483, 710
MaeII	ACGT	4 cut(s)	20, 490, 520, 1061
MaeIII	GTNAC	3 cut(s)	491, 565, 899
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	5 cut(s)	31, 36, 637, 958, 1019
MluCI	AATT	6 cut(s)	180, 197, 321, 367, 664, 1022
MlyI	GAGTC	2 cut(s)	257, 372
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	1026
MseI	TTAA	2 cut(s)	588, 866
MspA1I	CMGCKG	1 cut(s)	787
MspI	CCGG	3 cut(s)	248, 375, 792
MspR9I	CCNGG	2 cut(s)	775, 812
MvaI	CCWGG	2 cut(s)	775, 812
MwoI	GCNNNNNNNGC	6 cut(s)	201, 234, 739, 784, 851, 1076
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	2 cut(s)	809, 1112
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	491, 899
NsiI	ATGCAT	1 cut(s)	744
PaqCI	CACCTGC	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	932
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	1026
PfeI	GAWTC	2 cut(s)	448, 979
PkrI	GCNGC	6 cut(s)	230, 246, 721, 853, 976, 1099
PleI	GAGTC	2 cut(s)	257, 372
PpsI	GAGTC	2 cut(s)	257, 372
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	773, 810
PspGI	CCWGG	2 cut(s)	773, 810
PspN4I	GGNNCC	2 cut(s)	809, 1112
PstNI	CAGNNNCTG	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	2 cut(s)	331, 599
RsaNI	GTAC	2 cut(s)	330, 598
SaqAI	TTAA	2 cut(s)	588, 866
SatI	GCNGC	6 cut(s)	229, 245, 720, 852, 975, 1098
Sau3AI	GATC	1 cut(s)	441
SchI	GAGTC	2 cut(s)	257, 372
ScrFI	CCNGG	2 cut(s)	775, 812
SfaNI	GCATC	3 cut(s)	388, 751, 787
SfcI	CTRYAG	1 cut(s)	608
Sse9I	AATT	6 cut(s)	180, 197, 321, 367, 664, 1022
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	5 cut(s)	106, 193, 401, 542, 845
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	483, 710
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	2 cut(s)	773, 810
TaaI	ACNGT	4 cut(s)	217, 334, 574, 612
TaiI	ACGT	4 cut(s)	23, 493, 523, 1064
TaqI	TCGA	2 cut(s)	284, 396
TasI	AATT	6 cut(s)	180, 197, 321, 367, 664, 1022
TfiI	GAWTC	2 cut(s)	448, 979
Tru1I	TTAA	2 cut(s)	588, 866
Tru9I	TTAA	2 cut(s)	588, 866
TscAI	CASTG	3 cut(s)	322, 564, 1057
TseFI	GTSAC	2 cut(s)	491, 899
TseI	GCWGC	6 cut(s)	228, 244, 719, 851, 974, 1097
Tsp45I	GTSAC	2 cut(s)	491, 899
TspDTI	ATGAA	5 cut(s)	87, 199, 331, 658, 660
TspGWI	ACGGA	2 cut(s)	518, 829
TspRI	CASTG	3 cut(s)	322, 564, 1057
XagI	CCTNNNNNAGG	1 cut(s)	1091
XapI	RAATTY	4 cut(s)	180, 197, 664, 1022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	1026
XspI	CTAG	2 cut(s)	483, 710
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.