Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010250

Physical Location & Seq

Genomic Coordinates Reverse (-)

28560422 .. 28563369

Gene Structure 2948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTTCCTCCTCCACCCTTGTCCTTTCAACCCTCTTCTCTTCTTTCCCTCTCCAAAAAACCCTAAACCCAAAAACCAAGAACCCCTTCTCTCTCACTCCCCACAAACTCCCTAAACCTCCTTCTTCCCTGACCCTCAGTTGTTCAACGTTTCTGAAACCCAAACCCCATCACAATCAGATTCAACTGTGCAGGAGATTTCGAGCCCACACCACCATCAGAGATGTCGATAAGGACGAGGAGGAGGAGGAGCAGGCAGTTGTGGGAGAAGACTCGGCTGAGTTTCTCTTGTCAAAGCAGAAGCTGTCTTCCTGGCTTTATTTCACTGCTGTTCTCGGGACTGTTCTGTTTGTGCTCAACGTGGCTTGGATTGATAATTCGACCGGGTTTGGGAAGCCTTTCATCGAAGCGGTTTCGGAACTTTCTGATAGCCATGAGGTTGTAATGTTGCTCCTGATTCTCATATTTGCCGTAGTCCATAGTGGTTTGGCTAGCCTACGAGACGCTGGTGAGAAGCTTATTGGAGAACGTGCTTTCCGCGTTTTGTTTGCAGGGACATCTTTACCATTGGCTGTTAGTACTGTTGTATATTTCATTAACCACAGATATGATGGAGTACAGTTATGGCAGCTCAAGGATGTATATGGTGTACATGAATTGGTGTGGTTGTCTAATTTTATTTCCTTCCTCTTCCTTTATCCATCGACTTTCAATCTACTAGAGGTAGCAGCTGTTGACAAGCCCAAAATGCATCTTTGGGAAACTGGGATTATGAGAATCACCAGGCATCCACAGGTAACAAATTCGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016119 GO:0016120 GO:0016853 GO:0016859 GO:0042214 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:0090471 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

NnrU

Protein Analysis

271

Amino Acids

30.52

Weight (kDa)

7.16

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NnrU	PF07298	148 - 267	6.1e-20	NnrU protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10830 AT1G10830 AT1G10830
fragaria_vesca	FvH4_4g12260 FvH4_4g12260 FvH4_4g12260
malus_domestica	MD04G1028100.v1.1
prunus_persica	Prupe.1G177500_v2.0.a1
pyrus_communis	pycom04g02470
rosa_chinensis	RchiOBHm_Chr4g0410061
rosa_laevigata	RLG00000008505
rosa_multiflora	Rmu_co8413299.1_g000001 Rmu_sc0000365.1_g000059 Rmu_sc0002691.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354590
rosa_rugosa	Rorug04G0100800
rosa_samantha	Rh4AG159100 Rh4BG158400 Rh4CG170400 Rh4DG154200
rosa_wichuraiana	Rw4G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	540
AciI	CCGC	2 cut(s)	410, 538
AclI	AACGTT	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	802
AfaI	GTAC	3 cut(s)	580, 618, 651
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	30, 147, 185, 712
AjnI	CCWGG	2 cut(s)	311, 782
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	304, 517, 631, 731
AluI	AGCT	4 cut(s)	304, 517, 631, 731
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	628, 728
ApoI	RAATTY	1 cut(s)	802
Asp700I	GAANNNNTTC	2 cut(s)	86, 398
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	521, 772
AsuNHI	GCTAGC	1 cut(s)	491
AvaI	CYCGRG	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	276, 300
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	640, 740
BccI	CCATC	4 cut(s)	177, 224, 605, 709
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	313, 784
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	492, 719
BisI	GCNGC	2 cut(s)	629, 729
BlsI	GCNGC	2 cut(s)	630, 730
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	3 cut(s)	313, 385, 784
BmeT110I	CYCGRG	1 cut(s)	335
BmrFI	CCNGG	3 cut(s)	313, 385, 784
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	2 cut(s)	760, 796
BmtI	GCTAGC	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	774
BpiI	GAAGAC	2 cut(s)	276, 300
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	769
BseBI	CCWGG	2 cut(s)	313, 784
BseGI	GGATG	2 cut(s)	643, 787
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	151, 270
BseNI	ACTGG	1 cut(s)	769
BseRI	GAGGAG	4 cut(s)	254, 257, 260, 263
BseXI	GCAGC	2 cut(s)	640, 740
BsgI	GTGCAG	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	352, 568
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	495
BsmBI	CGTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	352, 568
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	208, 357
Bsp1407I	TGTACA	1 cut(s)	649
BspACI	CCGC	2 cut(s)	410, 538
BspCNI	CTCAG	2 cut(s)	150, 271
BspFNI	CGCG	1 cut(s)	540
BspOI	GCTAGC	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	769
Bst2UI	CCWGG	2 cut(s)	313, 784
Bst4CI	ACNGT	4 cut(s)	189, 343, 583, 621
Bst6I	CTCTTC	3 cut(s)	41, 46, 695
BstAUI	TGTACA	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	255, 493
BstDEI	CTNAG	2 cut(s)	137, 279
BstF5I	GGATG	2 cut(s)	643, 787
BstFNI	CGCG	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	495
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	748
BstNI	CCWGG	2 cut(s)	313, 784
BstSCI	CCNGG	3 cut(s)	311, 383, 782
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	640, 740
BstV2I	GAAGAC	2 cut(s)	276, 300
BtsCI	GGATG	2 cut(s)	643, 787
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	255, 493
CaiI	CAGNNNCTG	1 cut(s)	304
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	579, 617, 650
CviAII	CATG	2 cut(s)	434, 653
CviQI	GTAC	3 cut(s)	579, 617, 650
DdeI	CTNAG	2 cut(s)	137, 279
Eam1104I	CTCTTC	3 cut(s)	41, 46, 695
EarI	CTCTTC	3 cut(s)	41, 46, 695
Eco24I	GRGCYC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	311, 782
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	2 cut(s)	437, 656
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	2 cut(s)	352, 568
FatI	CATG	2 cut(s)	433, 652
Fnu4HI	GCNGC	2 cut(s)	629, 729
FokI	GGATG	2 cut(s)	650, 774
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	629, 729
FspBI	CTAG	2 cut(s)	492, 719
GluI	GCNGC	2 cut(s)	629, 729
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	2 cut(s)	437, 656
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	181, 272, 457, 777
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	521, 772
Hpy166II	GTNNAC	2 cut(s)	650, 736
Hpy188I	TCNGA	5 cut(s)	156, 180, 221, 418, 427
Hpy188III	TCNNGA	2 cut(s)	337, 454
Hpy8I	GTNNAC	2 cut(s)	650, 736
HpyAV	CCTTC	3 cut(s)	97, 132, 694
HpyCH4III	ACNGT	4 cut(s)	189, 343, 583, 621
HpyCH4IV	ACGT	3 cut(s)	149, 360, 529
HpyCH4V	TGCA	3 cut(s)	192, 551, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	748
HpyF3I	CTNAG	2 cut(s)	137, 279
HpySE526I	ACGT	3 cut(s)	149, 360, 529
Hsp92II	CATG	2 cut(s)	437, 656
LmnI	GCTCC	2 cut(s)	250, 456
Lsp1109I	GCAGC	2 cut(s)	640, 740
LweI	GCATC	2 cut(s)	760, 796
MaeI	CTAG	2 cut(s)	492, 719
MaeII	ACGT	3 cut(s)	149, 360, 529
MaeIII	GTNAC	1 cut(s)	796
MboII	GAAGA	6 cut(s)	28, 33, 117, 281, 300, 682
MhlI	GDGCHC	2 cut(s)	208, 357
MluCI	AATT	4 cut(s)	376, 656, 673, 802
MlyI	GAGTC	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	2 cut(s)	86, 398
MseI	TTAA	2 cut(s)	597, 814
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	313, 385, 784
MvaI	CCWGG	2 cut(s)	313, 784
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	748
NciI	CCSGG	1 cut(s)	385
NheI	GCTAGC	1 cut(s)	491
NlaIII	CATG	2 cut(s)	437, 656
NmeAIII	GCCGAG	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	2 cut(s)	86, 398
PfeI	GAWTC	3 cut(s)	181, 457, 777
PkrI	GCNGC	2 cut(s)	630, 730
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	311, 782
PspGI	CCWGG	2 cut(s)	311, 782
PstNI	CAGNNNCTG	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	580, 618, 651
RsaNI	GTAC	3 cut(s)	579, 617, 650
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	597, 814
SatI	GCNGC	2 cut(s)	629, 729
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	313, 385, 784
SduI	GDGCHC	2 cut(s)	208, 357
SfaNI	GCATC	2 cut(s)	760, 796
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	376, 656, 673, 802
SsiI	CCGC	2 cut(s)	410, 538
SspMI	CTAG	2 cut(s)	492, 719
StyD4I	CCNGG	3 cut(s)	311, 383, 782
TaaI	ACNGT	4 cut(s)	189, 343, 583, 621
TaiI	ACGT	3 cut(s)	152, 363, 532
TaqI	TCGA	5 cut(s)	202, 228, 380, 405, 704
TasI	AATT	4 cut(s)	376, 656, 673, 802
TatI	WGTACW	3 cut(s)	578, 616, 649
TfiI	GAWTC	3 cut(s)	181, 457, 777
Tru1I	TTAA	2 cut(s)	597, 814
Tru9I	TTAA	2 cut(s)	597, 814
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	628, 728
TspDTI	ATGAA	3 cut(s)	391, 583, 669
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmnI	GAANNNNTTC	2 cut(s)	86, 398
XspI	CTAG	2 cut(s)	492, 719
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.